Ss1.1-Pig4-TMW8060D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCTGGCAGCTGGGAGGATGAGCCGGAGCCCGTACAACCTGGTGCCCAGATATATTCCT CAGAAACAGTCAGAAGACATGCATGCCTTTGTCACTGAAGTGGCCTACAAAATGCAGCTT CTGCAGATTCAGAACCTGGTTCTCAACCCATGGCCACTAATAGTTGCTGTTCTGCTTCAG AACCGGCCATCCATGGACTTTGATGCTCTGGTAGAGAAGACATTATGGCTGAAAGGCTTA GCCCAGGCCTTTGGGGGCTTTGTCACTTGGCCTGACAGTGAACCTGCTGAGGAAGTTGTC CAGTCCAGCATCCTTCTGCACTCCAACATTGTCAGCCTCCTCAGAGACCAGGTGGCTCTG AAAGTGGACTCTGGAGCCACAGACGTGGTCGATGGACTGATTTTCCAGCATGTCACCCTC CTCATGTGCTCGGCTTACAGGAACCAGTTGCTCAACGTCTTTGTCCGACCTTCTTTAGTG GCCGTGGCACTGCAGATGACACCCGGGTTCCGTAAAGAGGATGTCTACAGTTGCTTTCGC TTCCTATGCAGCGTGTTTTCAGATGAGTTCATCTTTCTGCCAGGAAATGCACTGAAGGAT TTTGAAGAAGGCTGTTACCTGCTTTCTAAAAGTGAGGCCATAGAAGTGACGACAAGGGAC ATCCTAGTTACAGAAAAAGGAAACGCTTTGTTAGAATTTTTAATAGGTCTCTTTAAACCT TTTGTGGAATCTTATCAGATAATTTGCAAATACCTCTTGAACGAAGAAGAAGACTCCTTC ACTGAGAAACAGTACCTGGTGAAAGTTAGGAAATTCACTAGTCAGCTTCTCGATCACGGC ACCTCGCAATGTTACGATGTATTATCTTCTGACGTGCAGAAGAACGCCTTAGCGGCATTT GTGCGGCTCGGTGTGGTGGACAAGAAGAAGGTAAATAGTGATACTGTATTTAATGTGAAT GAACCTGCCGCAACAAAGTTAGAAGAAATGCTTGGCTGTAAGACACCCATAGGAAAACCA GTAACTGCAAAGCTTTAATGATTGCCAAGTGGTTCCAGAAAAATTGGTCCATCATCCAAG CCTCGTGTGACAACAAACAAGGCAGCAAAGGAGGAGACCCATCTCCTTGTCCTTCATAAG GCTTCGAGGACAGCGGACTCGGGAGGGAGGAAGAGATGATCAGCTTAAGCAGTCAGTGAA ACCTTCTCCTTCACCATGGTTTAAAAGGCATTTGTATCCAACTTTGTGTGTGTTTTAAAA TAAAATAGCCTTTTGGAAACATGTTTGGAAAAACAAAGCCCAGCTCCTGTTAACGAACAC TTTTCAACTTATGACACGTGTTAAAGTCTTCTGTTGACTTGTGAGTTAAAGTGCACAGCA TCAACTCTGAAGGCTCTGGCTGAGAAAACTCCTGGAAAGGGCTTAACTTACACTCCTTGG CTTTAATTAAAGTTGCCTCTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCTGGCAGCTGGGAGGATGAGCCGGAGCCCGTACAACCTGGTGCCCAGATATATTCCT CAGAAACAGTCAGAAGACATGCATGCCTTTGTCACTGAAGTGGCCTACAAAATGCAGCTT CTGCAGATTCAGAACCTGGTTCTCAACCCATGGCCACTAATAGTTGCTGTTCTGCTTCAG AACCGGCCATCCATGGACTTTGATGCTCTGGTAGAGAAGACATTATGGCTGAAAGGCTTA GCCCAGGCCTTTGGGGGCTTTGTCACTTGGCCTGACAGTGAACCTGCTGAGGAAGTTGTC CAGTCCAGCATCCTTCTGCACTCCAACATTGTCAGCCTCCTCAGAGACCAGGTGGCTCTG AAAGTGGACTCTGGAGCCACAGACGTGGTCGATGGACTGATTTTCCAGCATGTCACCCTC CTCATGTGCTCGGCTTACAGGAACCAGTTGCTCAACGTCTTTGTCCGACCTTCTTTAGTG GCCGTGGCACTGCAGATGACACCCGGGTTCCGTAAAGAGGATGTCTACAGTTGCTTTCGC TTCCTATGCAGCGTGTTTTCAGATGAGTTCATCTTTCTGCCAGGAAATGCACTGAAGGAT TTTGAAGAAGGCTGTTACCTGCTTTCTAAAAGTGAGGCCATAGAAGTGACGACAAGGGAC ATCCTAGTTACAGAAAAAGGAAACGCTTTGTTAGAATTTTTAATAGGTCTCTTTAAACCT TTTGTGGAATCTTATCAGATAATTTGCAAATACCTCTTGAACGAAGAAGAAGACTCCTTC ACTGAGAAACAGTACCTGGTGAAAGTTAGGAAATTCACTAGTCAGCTTCTCGATCACGGC ACCTCGCAATGTTACGATGTATTATCTTCTGACGTGCAGAAGAACGCCTTAGCGGCATTT GTGCGGCTCGGTGTGGTGGACAAGAAGAAGGTAAATAGTGATACTGTATTTAATGTGAAT GAACCTGCCGCAACAAAGTTAGAAGAAATGCTTGGCTGTAAGACACCCATAGGAAAACCA GTAACTGCAAAGCTTTAATGATTGCCAAGTGGTTCCAGAAAAATTGGTCCATCATCCAAG CCTCGTGTGACAACAAACAAGGCAGCAAAGGAGGAGACCCATCTCCTTGTCCTTCATAAG GCTTCGAGGACAGCGGACTCGGGAGGGAGGAAGAGATGATCAGCTTAAGCAGTCAGTGAA ACCTTCTCCTTCACCATGGTTTAAAAGGCATTTGTATCCAACTTTGTGTGTGTTTTAAAA TAAAATAGCCTTTTGGAAACATGTTTGGAAAAACAAAGCCCAGCTCCTGTTAACGAACAC TTTTCAACTTATGACACGTGTTAAAGTCTTCTGTTGACTTGTGAGTTAAAGTGCACAGCA TCAACTCTGAAGGCTCTGGCTGAGAAAACTCCTGGAAAGGGCTTAACTTACACTCCTTGG CTTTAATTAAAGTTGCCTCTCACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 49-274, gnl|bosTau2|chr28 (1901617-1901392) | |
| 49-274, gnl|canFam2|chr4 (11164745-11164484) | |
| 49-274, gnl|danRer3|chr17 (9383366-9383108) | |
| 49-274, gnl|dasNov1|scaffold_755 (91446-91707) | |
| 49-274, gnl|echTel1|scaffold_310384 (14309-14049) | |
| 49-274, gnl|fr1|chrUn (291402084-291401798) | |
| 49-274, gnl|galGal2|chr3 (36859057-36859297) | |
| 49-274, gnl|hg17|chr1 (227710131-227710392) | |
| 49-274, gnl|Hg17|chr1 (227710159-227710384) | |
| 49-274, gnl|mm7|chr8 (123467502-123467758) | |
| 49-274, gnl|Mm7|chr8 (123467525-123467750) | |
| 49-274, gnl|monDom2|scaffold_13 (59925839-59926099) | |
| 49-274, gnl|oryCun1|scaffold_207629 (71818-72079) | |
| 49-274, gnl|panTro1|chr1 (211567102-211567363) | |
| 49-274, gnl|rheMac2|chr1 (225685462-225685201) | |
| 49-274, gnl|rn3|chr19 (55055276-55055533) | |
| 49-274, gnl|tetNig1|chr14 (1312325-1312066) | |
| 49-274, gnl|xenTro1|scaffold_303 (1149461-1149207) | |
| 596-738, gnl|bosTau2|chr28 (1895182-1895040) | |
| 596-738, gnl|Hg17|chr1 (227716401-227716543) | |
| 596-738, gnl|Mm7|chr8 (123473191-123473333) | |
| 994-1464, gnl|bosTau2|chr28 (1889464-1888976) | |
| 994-1464, gnl|Hg17|chr1 (227719979-227720450) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-274, gnl|bosTau2|chr28 (1901617-1901392) | |
| 49-274, gnl|canFam2|chr4 (11164745-11164484) | |
| 49-274, gnl|danRer3|chr17 (9383366-9383108) | |
| 49-274, gnl|dasNov1|scaffold_755 (91446-91707) | |
| 49-274, gnl|echTel1|scaffold_310384 (14309-14049) | |
| 49-274, gnl|fr1|chrUn (291402084-291401798) | |
| 49-274, gnl|galGal2|chr3 (36859057-36859297) | |
| 49-274, gnl|hg17|chr1 (227710131-227710392) | |
| 49-274, gnl|Hg17|chr1 (227710159-227710384) | |
| 49-274, gnl|mm7|chr8 (123467502-123467758) | |
| 49-274, gnl|Mm7|chr8 (123467525-123467750) | |
| 49-274, gnl|monDom2|scaffold_13 (59925839-59926099) | |
| 49-274, gnl|oryCun1|scaffold_207629 (71818-72079) | |
| 49-274, gnl|panTro1|chr1 (211567102-211567363) | |
| 49-274, gnl|rheMac2|chr1 (225685462-225685201) | |
| 49-274, gnl|rn3|chr19 (55055276-55055533) | |
| 49-274, gnl|tetNig1|chr14 (1312325-1312066) | |
| 49-274, gnl|xenTro1|scaffold_303 (1149461-1149207) | |
| 596-738, gnl|bosTau2|chr28 (1895182-1895040) | |
| 596-738, gnl|Hg17|chr1 (227716401-227716543) | |
| 596-738, gnl|Mm7|chr8 (123473191-123473333) | |
| 994-1464, gnl|bosTau2|chr28 (1889464-1888976) | |
| 994-1464, gnl|Hg17|chr1 (227719979-227720450) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| tbr (0.616713) | |
| cmu (0.55918) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| fce (0.271592) | |
| ret (0.257467) | |
| tes (0.207814) | |
| gul (0.177588) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.616713) | |
| cmu (0.55918) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| fce (0.271592) | |
| ret (0.257467) | |
| tes (0.207814) | |
| gul (0.177588) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |