Non-Coding RNA Search

Ss1.1-Pig4-TMW8060D11.3

Sequence:


               
               CAGGAGAGGGATGGAAAGCCACAGAGGAGCGGGGCAGGGGCGAGACCGGACTTGATGCAG
TCTGAGGAGGCTGCGGGTAGCTGTGGGAGAAGTCACGGGTGGCAGCTGAGGATGACTGGC
CCGGGGGAGGGAAGACGCAGTGTGGCACTGCGGAGCGGGAGGCGTCAGGCTCTGGAGCGC
CGAGGAGATGGCCGGGCTGGTGCGCATCGTCCGATAATTAGTAAGGAGCTCAAGGGTCAA
TAAGTTCCATTGGACCCCCCTCCTCCAGCCGCCCTCGCGGGGCGCGGGCGGTTTAACCCT
TTCTTGTTCTGAGTGACGCTGCCATCTGTTGCTTGTATCTGGCAAAGCGCACGTGCCAGA
ACTCTCTGGATGGCAGTCAGTCATTCAGTCAACGTTTATGAAGGCCTGCTGCATGAAGAA
AGAAGCCTTGTTACCAGGAGGTAATAATGGTGGTGCTTCAGCTACACTGGTACTGTTATA
AATTCCCTATGGTTTTTAAATCTCTTTTGGCGGTGGTTGCTTTTTTTCAGGAAGCACCAA
CTAATAAACTTCTCTATGCCAAGGATATCCCAACCTACAAAGAGGAAGTGAAATCTTATT
ACAAAGCAATCAGGGATTTGCCTCCATTGTCATCTTCAGAGATGGAAGAATTCTTAACTC
AGGAATCTAAGGTATTGTTGGAAAGTAGAAGTAAGACTGTTGGATCCTTTCTTTAAAAAG
CCATTTCACCTTCTCTCAACAAGGCTTTCTTTCTTTAAGAAACATGAAAATGAATTTAAT
GAAGAAGTGGCCTTGACAGAAATCTACAAATACATCATAAAATATTTTGATGAGGTAAGA
TTTTAAATAACCTCTTAAAAATTAGCTATGATTCAGTCACCAGAATTTGGTTATCAAGCA
TTCTACAGGTCTCAGGACAGCTCTGGCATCCCACATGGCCAGAAAGGGAGGCCAGGAGGT
GTCTGAGATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGAGGGATGGAAAGCCACAGAGGAGCGGGGCAGGGGCGAGACCGGACTTGATGCAG
TCTGAGGAGGCTGCGGGTAGCTGTGGGAGAAGTCACGGGTGGCAGCTGAGGATGACTGGC
CCGGGGGAGGGAAGACGCAGTGTGGCACTGCGGAGCGGGAGGCGTCAGGCTCTGGAGCGC
CGAGGAGATGGCCGGGCTGGTGCGCATCGTCCGATAATTAGTAAGGAGCTCAAGGGTCAA
TAAGTTCCATTGGACCCCCCTCCTCCAGCCGCCCTCGCGGGGCGCGGGCGGTTTAACCCT
TTCTTGTTCTGAGTGACGCTGCCATCTGTTGCTTGTATCTGGCAAAGCGCACGTGCCAGA
ACTCTCTGGATGGCAGTCAGTCATTCAGTCAACGTTTATGAAGGCCTGCTGCATGAAGAA
AGAAGCCTTGTTACCAGGAGGTAATAATGGTGGTGCTTCAGCTACACTGGTACTGTTATA
AATTCCCTATGGTTTTTAAATCTCTTTTGGCGGTGGTTGCTTTTTTTCAGGAAGCACCAA
CTAATAAACTTCTCTATGCCAAGGATATCCCAACCTACAAAGAGGAAGTGAAATCTTATT
ACAAAGCAATCAGGGATTTGCCTCCATTGTCATCTTCAGAGATGGAAGAATTCTTAACTC
AGGAATCTAAGGTATTGTTGGAAAGTAGAAGTAAGACTGTTGGATCCTTTCTTTAAAAAG
CCATTTCACCTTCTCTCAACAAGGCTTTCTTTCTTTAAGAAACATGAAAATGAATTTAAT
GAAGAAGTGGCCTTGACAGAAATCTACAAATACATCATAAAATATTTTGATGAGGTAAGA
TTTTAAATAACCTCTTAAAAATTAGCTATGATTCAGTCACCAGAATTTGGTTATCAAGCA
TTCTACAGGTCTCAGGACAGCTCTGGCATCCCACATGGCCAGAAAGGGAGGCCAGGAGGT
GTCTGAGATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CRY9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CRY9_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               856-970, - strand, RNAz p=0.993582

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               856-970, - strand, RNAz p=0.993582

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               356-970, gnl|bosTau2|chr5 (15193070-15193689)
               

               
               356-970, gnl|Hg17|chr12 (93199802-93200429)
               

               
               356-970, gnl|Mm7|chr10 (94355600-94355014)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-970, gnl|bosTau2|chr5 (15193070-15193689)
               

               
               356-970, gnl|Hg17|chr12 (93199802-93200429)
               

               
               356-970, gnl|Mm7|chr10 (94355600-94355014)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	356-970, gnl\|bosTau2\|chr5 (15193070-15193689)
	356-970, gnl\|Hg17\|chr12 (93199802-93200429)
	356-970, gnl\|Mm7\|chr10 (94355600-94355014)