Non-Coding RNA Search

Ss1.1-Pig4-TMW8060E11.3

Sequence:


               
               GCAAGCTGGACGAGTCTCTGACTCAAAGCCTGACATCCCCCGGGCCAGCACTGCTGTGCC
CCAGCTCCAGTGCTGCTCAGACTGCCTCCAGGTAGCAGTCTCAGCCAGGGCAGGACGTGG
GCCAGCCTGGGAGGCCACAGACAGATGGCTTGTCGCCTGGGTCGTGGCCCCTCCACACAG
CTGCAGGTTTGCCAAAGGAAGTTCTGGTTCTGTTACCCAACCTGGGAGCCCCAGGTCTGC
TGGCATTCCCAGGAAGAGGGAGGGAAACCTGCAAGGCTGGGAGAAGGCCCCGGCTCCCAT
GGGAATGAGGCAGGTCACACTTGATACTGGCCTGCAGTCACCCACAGAGTGCCTTGCCCT
GGCCACGGGGCATCTACTGAATCTCGTCCAGAACTCATTACAATACACCCTGGGTCTTTG
TGTTTGTTCTCTGCTGCTGCCTCTACTGGGTAGCTGGGCAACAGCACATCAAAGGCATCT
ATCAAGGAAGAATTTGCTAAAGATTCCTGTGAGATGGCATGAATTTGTCATCTGCCTGCA
TTCTGATAGAGAAGGGGTGCAGAAGATACACAAGACAAAGCCCCTGTCCACAGGAAGCTT
GAGCCCAACTGACAAGAACTGGCAGAACTTCATTGATGAGTATAGTTTCTGTGTGCCGAC
CAGAAGTGCTGTAGAAATGCCAGCAGCTGAGGAAGGAAGGCATGAACTGGCCCCTGAAGT
CTGGAGAGGAGTTAGGAGGGGTTGCTAAGCATGCTGGTGAGAAGACTGGTCTGTGTGGCA
GAGTGCACTGGGGCTGAGGTTGGATGGGTAGGGAGGGAGGTGGTGGAGGGTCTTGGGATC
TAAATTTGAAGTCATGGATAATGAGGACCACGTGTTCTTTACTTAAAACATGTGCTGGCG
CTTCAAAAACATAGAGTTGACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGCTGGACGAGTCTCTGACTCAAAGCCTGACATCCCCCGGGCCAGCACTGCTGTGCC
CCAGCTCCAGTGCTGCTCAGACTGCCTCCAGGTAGCAGTCTCAGCCAGGGCAGGACGTGG
GCCAGCCTGGGAGGCCACAGACAGATGGCTTGTCGCCTGGGTCGTGGCCCCTCCACACAG
CTGCAGGTTTGCCAAAGGAAGTTCTGGTTCTGTTACCCAACCTGGGAGCCCCAGGTCTGC
TGGCATTCCCAGGAAGAGGGAGGGAAACCTGCAAGGCTGGGAGAAGGCCCCGGCTCCCAT
GGGAATGAGGCAGGTCACACTTGATACTGGCCTGCAGTCACCCACAGAGTGCCTTGCCCT
GGCCACGGGGCATCTACTGAATCTCGTCCAGAACTCATTACAATACACCCTGGGTCTTTG
TGTTTGTTCTCTGCTGCTGCCTCTACTGGGTAGCTGGGCAACAGCACATCAAAGGCATCT
ATCAAGGAAGAATTTGCTAAAGATTCCTGTGAGATGGCATGAATTTGTCATCTGCCTGCA
TTCTGATAGAGAAGGGGTGCAGAAGATACACAAGACAAAGCCCCTGTCCACAGGAAGCTT
GAGCCCAACTGACAAGAACTGGCAGAACTTCATTGATGAGTATAGTTTCTGTGTGCCGAC
CAGAAGTGCTGTAGAAATGCCAGCAGCTGAGGAAGGAAGGCATGAACTGGCCCCTGAAGT
CTGGAGAGGAGTTAGGAGGGGTTGCTAAGCATGCTGGTGAGAAGACTGGTCTGTGTGGCA
GAGTGCACTGGGGCTGAGGTTGGATGGGTAGGGAGGGAGGTGGTGGAGGGTCTTGGGATC
TAAATTTGAAGTCATGGATAATGAGGACCACGTGTTCTTTACTTAAAACATGTGCTGGCG
CTTCAAAAACATAGAGTTGACATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               440-553, + strand, RNAz p=0.995044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-553, + strand, RNAz p=0.995044

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-362, gnl|bosTau2|chr13 (45730678-45731020)
               

               
               1-362, gnl|Hg17|chr20 (33562775-33563114)
               

               
               1-362, gnl|Mm7|chr2 (155739195-155739568)
               


               
               402-924, gnl|bosTau2|chr13 (45731087-45731597)
               

               
               402-924, gnl|Hg17|chr20 (33563192-33563673)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr13 (45730678-45731020)
               

               
               1-362, gnl|Hg17|chr20 (33562775-33563114)
               

               
               1-362, gnl|Mm7|chr2 (155739195-155739568)
               


               
               402-924, gnl|bosTau2|chr13 (45731087-45731597)
               

               
               402-924, gnl|Hg17|chr20 (33563192-33563673)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cje (0.165235)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-362, gnl\|bosTau2\|chr13 (45730678-45731020)
	1-362, gnl\|Hg17\|chr20 (33562775-33563114)
	1-362, gnl\|Mm7\|chr2 (155739195-155739568)

	402-924, gnl\|bosTau2\|chr13 (45731087-45731597)
	402-924, gnl\|Hg17\|chr20 (33563192-33563673)

	cje (0.165235)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)