Ss1.1-Pig4-TMW8060E14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCCCGTACGAAGGTAGTATA CCTGGCCAGTGAGACCTTCAACTATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCG GCTTGCACTCGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACC AAAGGTTGGTTCATTCCAGCTCTTTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAG GCGTTTTGAAGCAGAACCTCTCCCTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGA GCGGCTGGTGGTGCTGGATTACATCATCCGCAACACTGATCGAGGCAATGACAACTGGCT GATTAAATATGACTGTCCAATGGATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGT GAAGGAGCCTGTTATCAAGGTGGCTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCA TCCTGACTCCTGGAGGGCATATCCTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCC ATTCTCTCAGGAGATCAAAGATCTGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAA GGACTTGGAGGAGGACCTATATGAACTCTTCAAGAAAGATCCCGGTTTCGATAGGGGCCA GTTCCATAAGCAGATTGCCGTCATGCGGGGGCAGATCCTAAATCTGAGCCAGGCTCTGAA AGACAACAAGAGTCCCCTGCACCTCGTCCAGATGCCACCTGTGATTGTCGAGACGGCCCG TTCCCACCAGCGGTCTGCTAGCGAGTCCTACACGCAGAGCTTTCAGAGTCGGAAGCCCTT CTTTTCGTGGTGGTAGCCTCAGAGGCAAATGAAGGCATATTGTCTGAGACTTGGGCCAGG AGGAAGCCTGGGGAGCGGGTTGCAGGAAAAGCCAGAGAAGCTTATGGAGAGCAGTGCCCT TCAGAGCCCTCCCTGTCTGCTTGCCACCCTCCTCAGAGCTTTCCCAAGCACAGGGAGAAG CACAATCAGTGGGACAGTGTGTGCTGTTGGGCCCTTCTGAGTGCTGGGACGGGCTGGCAC TCAGGGCGTGTAGTCCACATGCCCAGAAGGAGCATCTCCCTTCCAGCATCCCTGGGGGGC AGGCTGGGAAACTCCCTCCCTCCCTGACACCCTGCTCTGTTGCTATTCCTCATTATATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCCCGTACGAAGGTAGTATA CCTGGCCAGTGAGACCTTCAACTATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCG GCTTGCACTCGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACC AAAGGTTGGTTCATTCCAGCTCTTTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAG GCGTTTTGAAGCAGAACCTCTCCCTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGA GCGGCTGGTGGTGCTGGATTACATCATCCGCAACACTGATCGAGGCAATGACAACTGGCT GATTAAATATGACTGTCCAATGGATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGT GAAGGAGCCTGTTATCAAGGTGGCTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCA TCCTGACTCCTGGAGGGCATATCCTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCC ATTCTCTCAGGAGATCAAAGATCTGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAA GGACTTGGAGGAGGACCTATATGAACTCTTCAAGAAAGATCCCGGTTTCGATAGGGGCCA GTTCCATAAGCAGATTGCCGTCATGCGGGGGCAGATCCTAAATCTGAGCCAGGCTCTGAA AGACAACAAGAGTCCCCTGCACCTCGTCCAGATGCCACCTGTGATTGTCGAGACGGCCCG TTCCCACCAGCGGTCTGCTAGCGAGTCCTACACGCAGAGCTTTCAGAGTCGGAAGCCCTT CTTTTCGTGGTGGTAGCCTCAGAGGCAAATGAAGGCATATTGTCTGAGACTTGGGCCAGG AGGAAGCCTGGGGAGCGGGTTGCAGGAAAAGCCAGAGAAGCTTATGGAGAGCAGTGCCCT TCAGAGCCCTCCCTGTCTGCTTGCCACCCTCCTCAGAGCTTTCCCAAGCACAGGGAGAAG CACAATCAGTGGGACAGTGTGTGCTGTTGGGCCCTTCTGAGTGCTGGGACGGGCTGGCAC TCAGGGCGTGTAGTCCACATGCCCAGAAGGAGCATCTCCCTTCCAGCATCCCTGGGGGGC AGGCTGGGAAACTCCCTCCCTCCCTGACACCCTGCTCTGTTGCTATTCCTCATTATATTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 498-616, + strand, RNAz p=0.94025 | |
| 1085-1200, - strand, RNAz p=0.838634 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 498-616, + strand, RNAz p=0.94025 | |
| 1085-1200, - strand, RNAz p=0.838634 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 183-338, gnl|bosTau2|chr26 (10461900-10461745) | |
| 183-338, gnl|canFam2|chr28 (13901810-13901987) | |
| 183-338, gnl|canFam2|chr28 (13901796-13901983) | |
| 183-338, gnl|danRer3|chr1 (54816635-54816814) | |
| 183-338, gnl|danRer3|chr1 (54816621-54816793) | |
| 183-338, gnl|dasNov1|scaffold_149274 (7464-7619) | |
| 183-338, gnl|dasNov1|scaffold_149274 (7450-7638) | |
| 183-338, gnl|echTel1|scaffold_311636 (39733-39580) | |
| 183-338, gnl|echTel1|scaffold_311636 (39747-39563) | |
| 183-338, gnl|fr1|chrUn (205828612-205828369) | |
| 183-338, gnl|fr1|chrUn (205828629-205828460) | |
| 183-338, gnl|galGal2|chrUn (64576051-64576214) | |
| 183-338, gnl|galGal2|chrUn (64576037-64576225) | |
| 183-338, gnl|hg17|chr10 (99406553-99406741) | |
| 183-338, gnl|Hg17|chr10 (99406566-99406721) | |
| 183-338, gnl|hg17|chr17 (48867240-48867415) | |
| 183-338, gnl|loxAfr1|scaffold_23537 (46732-46887) | |
| 183-338, gnl|loxAfr1|scaffold_23537 (46718-46906) | |
| 183-338, gnl|mm7|chr19 (41999168-41999323) | |
| 183-338, gnl|mm7|chr19 (41999154-41999342) | |
| 183-338, gnl|Mm7|chr19 (41999167-41999322) | |
| 183-338, gnl|monDom2|scaffold_14 (24799941-24799783) | |
| 183-338, gnl|monDom2|scaffold_14 (24799956-24799767) | |
| 183-338, gnl|oryCun1|scaffold_204804 (129389-129551) | |
| 183-338, gnl|oryCun1|scaffold_204804 (129375-129565) | |
| 183-338, gnl|panTro1|chr19_random (34591387-34591562) | |
| 183-338, gnl|panTro1|chr8 (101143523-101143711) | |
| 183-338, gnl|rheMac2|chr16 (37741324-37741499) | |
| 183-338, gnl|rheMac2|chr16 (37741324-37741500) | |
| 183-338, gnl|rn3|chr1 (249007376-249007221) | |
| 183-338, gnl|rn3|chr1 (249007390-249007202) | |
| 183-338, gnl|tetNig1|chr18 (1948544-1948304) | |
| 183-338, gnl|tetNig1|chr18 (1948551-1948392) | |
| 183-338, gnl|xenTro1|scaffold_51 (892384-892547) | |
| 183-338, gnl|xenTro1|scaffold_51 (892380-892541) | |
| 498-634, gnl|bosTau2|chr26 (10455452-10455316) | |
| 498-634, gnl|canFam2|chr28 (13910538-13910682) | |
| 498-634, gnl|canFam2|chr28 (13910519-13910685) | |
| 498-634, gnl|danRer3|chr1 (54817308-54817452) | |
| 498-634, gnl|danRer3|chr1 (54817290-54817455) | |
| 498-634, gnl|dasNov1|scaffold_91963 (1449-1316) | |
| 498-634, gnl|dasNov1|scaffold_91963 (1468-1302) | |
| 498-634, gnl|echTel1|scaffold_220257 (3572-3736) | |
| 498-634, gnl|fr1|chrUn (205827234-205827096) | |
| 498-634, gnl|fr1|chrUn (205827256-205827100) | |
| 498-634, gnl|galGal2|chrUn (64577077-64577208) | |
| 498-634, gnl|galGal2|chrUn (64577061-64577216) | |
| 498-634, gnl|hg17|chr10 (99416167-99416333) | |
| 498-634, gnl|Hg17|chr10 (99416182-99416318) | |
| 498-634, gnl|hg17|chr17 (48867553-48867694) | |
| 498-634, gnl|loxAfr1|scaffold_11731 (11383-11253) | |
| 498-634, gnl|loxAfr1|scaffold_11731 (11402-11239) | |
| 498-634, gnl|mm7|chr19 (42009725-42009856) | |
| 498-634, gnl|mm7|chr19 (42009707-42009864) | |
| 498-634, gnl|Mm7|chr19 (42009721-42009857) | |
| 498-634, gnl|monDom2|scaffold_14 (24796234-24796089) | |
| 498-634, gnl|monDom2|scaffold_14 (24796253-24796087) | |
| 498-634, gnl|oryCun1|scaffold_204804 (138854-138999) | |
| 498-634, gnl|oryCun1|scaffold_204804 (138835-139001) | |
| 498-634, gnl|panTro1|chr19_random (34591700-34591841) | |
| 498-634, gnl|panTro1|chr8 (101152838-101153004) | |
| 498-634, gnl|rheMac2|chr16 (37741637-37741779) | |
| 498-634, gnl|rheMac2|chr9 (97251519-97251685) | |
| 498-634, gnl|rn3|chr1 (248999237-248999096) | |
| 498-634, gnl|rn3|chr1 (248999256-248999095) | |
| 498-634, gnl|tetNig1|chr18 (1947770-1947637) | |
| 498-634, gnl|tetNig1|chr18 (1947776-1947635) | |
| 498-634, gnl|xenTro1|scaffold_51 (895769-895902) | |
| 498-634, gnl|xenTro1|scaffold_51 (895755-895911) | |
| 691-1200, gnl|bosTau2|chr26 (10450671-10450178) | |
| 691-1200, gnl|Hg17|chr10 (99423324-99423827) | |
| 691-1200, gnl|Mm7|chr19 (42013628-42014133) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-338, gnl|bosTau2|chr26 (10461900-10461745) | |
| 183-338, gnl|canFam2|chr28 (13901810-13901987) | |
| 183-338, gnl|canFam2|chr28 (13901796-13901983) | |
| 183-338, gnl|danRer3|chr1 (54816635-54816814) | |
| 183-338, gnl|danRer3|chr1 (54816621-54816793) | |
| 183-338, gnl|dasNov1|scaffold_149274 (7464-7619) | |
| 183-338, gnl|dasNov1|scaffold_149274 (7450-7638) | |
| 183-338, gnl|echTel1|scaffold_311636 (39733-39580) | |
| 183-338, gnl|echTel1|scaffold_311636 (39747-39563) | |
| 183-338, gnl|fr1|chrUn (205828612-205828369) | |
| 183-338, gnl|fr1|chrUn (205828629-205828460) | |
| 183-338, gnl|galGal2|chrUn (64576051-64576214) | |
| 183-338, gnl|galGal2|chrUn (64576037-64576225) | |
| 183-338, gnl|hg17|chr10 (99406553-99406741) | |
| 183-338, gnl|Hg17|chr10 (99406566-99406721) | |
| 183-338, gnl|hg17|chr17 (48867240-48867415) | |
| 183-338, gnl|loxAfr1|scaffold_23537 (46732-46887) | |
| 183-338, gnl|loxAfr1|scaffold_23537 (46718-46906) | |
| 183-338, gnl|mm7|chr19 (41999168-41999323) | |
| 183-338, gnl|mm7|chr19 (41999154-41999342) | |
| 183-338, gnl|Mm7|chr19 (41999167-41999322) | |
| 183-338, gnl|monDom2|scaffold_14 (24799941-24799783) | |
| 183-338, gnl|monDom2|scaffold_14 (24799956-24799767) | |
| 183-338, gnl|oryCun1|scaffold_204804 (129389-129551) | |
| 183-338, gnl|oryCun1|scaffold_204804 (129375-129565) | |
| 183-338, gnl|panTro1|chr19_random (34591387-34591562) | |
| 183-338, gnl|panTro1|chr8 (101143523-101143711) | |
| 183-338, gnl|rheMac2|chr16 (37741324-37741499) | |
| 183-338, gnl|rheMac2|chr16 (37741324-37741500) | |
| 183-338, gnl|rn3|chr1 (249007376-249007221) | |
| 183-338, gnl|rn3|chr1 (249007390-249007202) | |
| 183-338, gnl|tetNig1|chr18 (1948544-1948304) | |
| 183-338, gnl|tetNig1|chr18 (1948551-1948392) | |
| 183-338, gnl|xenTro1|scaffold_51 (892384-892547) | |
| 183-338, gnl|xenTro1|scaffold_51 (892380-892541) | |
| 498-634, gnl|bosTau2|chr26 (10455452-10455316) | |
| 498-634, gnl|canFam2|chr28 (13910538-13910682) | |
| 498-634, gnl|canFam2|chr28 (13910519-13910685) | |
| 498-634, gnl|danRer3|chr1 (54817308-54817452) | |
| 498-634, gnl|danRer3|chr1 (54817290-54817455) | |
| 498-634, gnl|dasNov1|scaffold_91963 (1449-1316) | |
| 498-634, gnl|dasNov1|scaffold_91963 (1468-1302) | |
| 498-634, gnl|echTel1|scaffold_220257 (3572-3736) | |
| 498-634, gnl|fr1|chrUn (205827234-205827096) | |
| 498-634, gnl|fr1|chrUn (205827256-205827100) | |
| 498-634, gnl|galGal2|chrUn (64577077-64577208) | |
| 498-634, gnl|galGal2|chrUn (64577061-64577216) | |
| 498-634, gnl|hg17|chr10 (99416167-99416333) | |
| 498-634, gnl|Hg17|chr10 (99416182-99416318) | |
| 498-634, gnl|hg17|chr17 (48867553-48867694) | |
| 498-634, gnl|loxAfr1|scaffold_11731 (11383-11253) | |
| 498-634, gnl|loxAfr1|scaffold_11731 (11402-11239) | |
| 498-634, gnl|mm7|chr19 (42009725-42009856) | |
| 498-634, gnl|mm7|chr19 (42009707-42009864) | |
| 498-634, gnl|Mm7|chr19 (42009721-42009857) | |
| 498-634, gnl|monDom2|scaffold_14 (24796234-24796089) | |
| 498-634, gnl|monDom2|scaffold_14 (24796253-24796087) | |
| 498-634, gnl|oryCun1|scaffold_204804 (138854-138999) | |
| 498-634, gnl|oryCun1|scaffold_204804 (138835-139001) | |
| 498-634, gnl|panTro1|chr19_random (34591700-34591841) | |
| 498-634, gnl|panTro1|chr8 (101152838-101153004) | |
| 498-634, gnl|rheMac2|chr16 (37741637-37741779) | |
| 498-634, gnl|rheMac2|chr9 (97251519-97251685) | |
| 498-634, gnl|rn3|chr1 (248999237-248999096) | |
| 498-634, gnl|rn3|chr1 (248999256-248999095) | |
| 498-634, gnl|tetNig1|chr18 (1947770-1947637) | |
| 498-634, gnl|tetNig1|chr18 (1947776-1947635) | |
| 498-634, gnl|xenTro1|scaffold_51 (895769-895902) | |
| 498-634, gnl|xenTro1|scaffold_51 (895755-895911) | |
| 691-1200, gnl|bosTau2|chr26 (10450671-10450178) | |
| 691-1200, gnl|Hg17|chr10 (99423324-99423827) | |
| 691-1200, gnl|Mm7|chr19 (42013628-42014133) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| csp (0.483559) | |
| fli (0.405762) | |
| cov (0.264306) | |
| ece (0.229305) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| cly (0.120642) | |
| pgl (0.118483) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.483559) | |
| fli (0.405762) | |
| cov (0.264306) | |
| ece (0.229305) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| cly (0.120642) | |
| pgl (0.118483) |