Ss1.1-Pig4-TMW8060E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATAAGAAACAAGACTATTATTTTTCCCACAACAGAACCTGGTGAAACTTCAGGAAAT CACCTGGAACTTGAGAATCACGGGGACACGCAAGTGCGATGGTACCTGTCATCTCTAGCC CCTCCTTATGTCAAGGGAGTGGACGAGAGTGGGGATGTTTTTAGGGCTACCTATGCTGTG TTCAGGTGTTCTCCTATTTCCGGTGTCCTGGAAAGTCATGGAGTCCAGAGGGTGTCAATC ACGTTTTTGCCCAGAGACAAAGGGGAGTATGCCCAGTTTTGGGATGTTGAGTGTCACCCT CTTAAAGAGCCTCACCTGAAGCACACCTTGAGGTTCCAGCTCTCTGGACAAAGTGTCAAA GCAGGACTTGAACCTGAAAATGCACGCATGTCCACGAATGGCCTCATTAAACTCGATAAT GTAATGAAGTCCCAAAGACGAGCTGAGTCAGAGGCCTCGGTCCCCATTCCTAGCAGGCAG CTGGACCTAATTCACCGTGGAGTTTATGCCCCACAAGACGTGTATCAGTTTCTGCCAACG AGAGTTGGAGAATCGAGGACGTTGAAAGTTAATTTGCGAAATAATTCTTTTATTACACAC TCGCTGAAGTTTTTAAGTCCCAGAGAGCCTTTCTACGTCAAACATTCAAAATATTCTTTG AGGGCCCAGCACTACATCAACATGCCCGTGCAGTTCAAGCCCAGGTCCACGGGCAGGTTT GAGGCTTTGCTGGTCGTGCAGACAGACGAAGGCAAGAGTGTGGCTGTCCGGCTGATGGGT GAAGCCCTTGAAAAAAGTTAACTGGAAGCTTTTTGCAAAGTAAATGACATACATTATATC TTGGTAACTTTATTTTTTCTGCACTACAATTATGCTCTTGTATATATTTTGTATGATAAA TTGGATGTCTGTAACTAGATTTTTCTATTTGGAGAAGCTAATCCCGAAGACCTGACGAAA ATAATCATGTGTCTAACCTACAATATGTATGTAACTTTTACAGGGGAGAAGAGTTCTATT TTTGCATTGATTATGATATCCTTAGTAAATATGGCATATATTTTAGTTGGTATATCCAGA AATAAACTTAATTTCCACTGAAATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATAAGAAACAAGACTATTATTTTTCCCACAACAGAACCTGGTGAAACTTCAGGAAAT CACCTGGAACTTGAGAATCACGGGGACACGCAAGTGCGATGGTACCTGTCATCTCTAGCC CCTCCTTATGTCAAGGGAGTGGACGAGAGTGGGGATGTTTTTAGGGCTACCTATGCTGTG TTCAGGTGTTCTCCTATTTCCGGTGTCCTGGAAAGTCATGGAGTCCAGAGGGTGTCAATC ACGTTTTTGCCCAGAGACAAAGGGGAGTATGCCCAGTTTTGGGATGTTGAGTGTCACCCT CTTAAAGAGCCTCACCTGAAGCACACCTTGAGGTTCCAGCTCTCTGGACAAAGTGTCAAA GCAGGACTTGAACCTGAAAATGCACGCATGTCCACGAATGGCCTCATTAAACTCGATAAT GTAATGAAGTCCCAAAGACGAGCTGAGTCAGAGGCCTCGGTCCCCATTCCTAGCAGGCAG CTGGACCTAATTCACCGTGGAGTTTATGCCCCACAAGACGTGTATCAGTTTCTGCCAACG AGAGTTGGAGAATCGAGGACGTTGAAAGTTAATTTGCGAAATAATTCTTTTATTACACAC TCGCTGAAGTTTTTAAGTCCCAGAGAGCCTTTCTACGTCAAACATTCAAAATATTCTTTG AGGGCCCAGCACTACATCAACATGCCCGTGCAGTTCAAGCCCAGGTCCACGGGCAGGTTT GAGGCTTTGCTGGTCGTGCAGACAGACGAAGGCAAGAGTGTGGCTGTCCGGCTGATGGGT GAAGCCCTTGAAAAAAGTTAACTGGAAGCTTTTTGCAAAGTAAATGACATACATTATATC TTGGTAACTTTATTTTTTCTGCACTACAATTATGCTCTTGTATATATTTTGTATGATAAA TTGGATGTCTGTAACTAGATTTTTCTATTTGGAGAAGCTAATCCCGAAGACCTGACGAAA ATAATCATGTGTCTAACCTACAATATGTATGTAACTTTTACAGGGGAGAAGAGTTCTATT TTTGCATTGATTATGATATCCTTAGTAAATATGGCATATATTTTAGTTGGTATATCCAGA AATAAACTTAATTTCCACTGAAATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 231-350, - strand, RNAz p=0.802569 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-350, - strand, RNAz p=0.802569 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 231-350, gnl|bosTau2|chr24 (30896018-30896137) | |
| 231-350, gnl|canFam2|chr7 (81581428-81581603) | |
| 231-350, gnl|danRer3|chrUn (116131962-116131813) | |
| 231-350, gnl|dasNov1|scaffold_4628 (497-671) | |
| 231-350, gnl|echTel1|scaffold_286914 (5868-5696) | |
| 231-350, gnl|galGal2|chr2 (96748073-96748240) | |
| 231-350, gnl|hg17|chr18 (13103540-13103712) | |
| 231-350, gnl|Hg17|chr18 (13103584-13103703) | |
| 231-350, gnl|mm7|chr18 (68270210-68270378) | |
| 231-350, gnl|Mm7|chr18 (68270250-68270369) | |
| 231-350, gnl|monDom2|scaffold_21 (18624064-18623887) | |
| 231-350, gnl|oryCun1|scaffold_174529 (5454-5628) | |
| 231-350, gnl|panTro1|chr17_random (4535368-4535196) | |
| 231-350, gnl|rheMac2|chr18 (1610910-1610738) | |
| 231-350, gnl|rn3|chr18 (64506395-64506561) | |
| 231-350, gnl|tetNig1|chr8 (10198070-10198235) | |
| 471-611, gnl|bosTau2|chr24 (30898063-30898202) | |
| 471-611, gnl|canFam2|chr7 (81584542-81584756) | |
| 471-611, gnl|dasNov1|scaffold_4628 (1817-2029) | |
| 471-611, gnl|galGal2|chr2 (96753000-96753191) | |
| 471-611, gnl|hg17|chr18 (13106342-13106558) | |
| 471-611, gnl|Hg17|chr18 (13106370-13106509) | |
| 471-611, gnl|mm7|chr18 (68273024-68273219) | |
| 471-611, gnl|Mm7|chr18 (68273040-68273179) | |
| 471-611, gnl|monDom2|scaffold_21 (18618854-18618654) | |
| 471-611, gnl|oryCun1|scaffold_174529 (9584-9797) | |
| 471-611, gnl|panTro1|chr17_random (4532507-4532291) | |
| 471-611, gnl|rheMac2|chr18 (1608122-1607906) | |
| 471-611, gnl|rn3|chr18 (64508869-64509081) | |
| 661-1102, gnl|bosTau2|chr24 (30905924-30906364) | |
| 661-1102, gnl|Hg17|chr18 (13114629-13115064) | |
| 661-1102, gnl|Mm7|chr18 (68277032-68277465) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 231-350, gnl|bosTau2|chr24 (30896018-30896137) | |
| 231-350, gnl|canFam2|chr7 (81581428-81581603) | |
| 231-350, gnl|danRer3|chrUn (116131962-116131813) | |
| 231-350, gnl|dasNov1|scaffold_4628 (497-671) | |
| 231-350, gnl|echTel1|scaffold_286914 (5868-5696) | |
| 231-350, gnl|galGal2|chr2 (96748073-96748240) | |
| 231-350, gnl|hg17|chr18 (13103540-13103712) | |
| 231-350, gnl|Hg17|chr18 (13103584-13103703) | |
| 231-350, gnl|mm7|chr18 (68270210-68270378) | |
| 231-350, gnl|Mm7|chr18 (68270250-68270369) | |
| 231-350, gnl|monDom2|scaffold_21 (18624064-18623887) | |
| 231-350, gnl|oryCun1|scaffold_174529 (5454-5628) | |
| 231-350, gnl|panTro1|chr17_random (4535368-4535196) | |
| 231-350, gnl|rheMac2|chr18 (1610910-1610738) | |
| 231-350, gnl|rn3|chr18 (64506395-64506561) | |
| 231-350, gnl|tetNig1|chr8 (10198070-10198235) | |
| 471-611, gnl|bosTau2|chr24 (30898063-30898202) | |
| 471-611, gnl|canFam2|chr7 (81584542-81584756) | |
| 471-611, gnl|dasNov1|scaffold_4628 (1817-2029) | |
| 471-611, gnl|galGal2|chr2 (96753000-96753191) | |
| 471-611, gnl|hg17|chr18 (13106342-13106558) | |
| 471-611, gnl|Hg17|chr18 (13106370-13106509) | |
| 471-611, gnl|mm7|chr18 (68273024-68273219) | |
| 471-611, gnl|Mm7|chr18 (68273040-68273179) | |
| 471-611, gnl|monDom2|scaffold_21 (18618854-18618654) | |
| 471-611, gnl|oryCun1|scaffold_174529 (9584-9797) | |
| 471-611, gnl|panTro1|chr17_random (4532507-4532291) | |
| 471-611, gnl|rheMac2|chr18 (1608122-1607906) | |
| 471-611, gnl|rn3|chr18 (64508869-64509081) | |
| 661-1102, gnl|bosTau2|chr24 (30905924-30906364) | |
| 661-1102, gnl|Hg17|chr18 (13114629-13115064) | |
| 661-1102, gnl|Mm7|chr18 (68277032-68277465) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| sme (0.305437) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ldo (0.0970026) |