Ss1.1-Pig4-TMW8060E23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTCTATAAACAGTATTTTAATATTTGTATAAATAGACCACAGTATTACCA AAAACTGCAAGAACAGCATGGAAAACAGACTCTCAAACCCGTGCACGCAGCCCCTCGTGG CTGCCCATGACGGTGGCCCCCCTCACCCTGGCCAGGAATGGGTGCTGCGTGGAAGGAGAG GAATGCACCTCTCTGGGGAGCGCTGAAGGCGGCAGGCTCGGGGCTCCCCACCCCTGCCGC TGACCTCTTGATCTATTACAAAAATAATTCCAGGTGGCGGGGGCGGGGAGTTGTGACCCC TCTGGGAAGAGAGCGATGGGCTGCTCTCAGCCCCAGACGGGCCCTGTGGGGCCAGCAGTG CCCCCGCGGCCCAGAGCCACCCAGCAGCTGGTGGAGAGTGGTAGGTGGGCGGCAGCCGCG GCCCTATCTCTGCACGTGGCGGACAAAGGCCTGCACGAGCTGGATCAGAGGCTCCTGGCT CTCAGGGCTGGCCTTGGAGACAGAAGCGGACTTGCCCTGAGGCGACGGCAAGACGCCCGC GGCAGGGGAGCTGGGGGCTCCCCGGCGGAAGTAGCGGGAGAGGCTGGACAGCAGAGTGCT CAGCTCCGAGCTGAGCTCTTGCTTCATCCGCTGCTTGTCGCGGGGGTGCACAGCCGGGTC CCTAAGGTACCGCATTGCCTGGGAGATGAGCAGGTAGAAGCAGTTCTCCATGGTGAACAG CAGCAGGGACTTCAGCGTTCTGGTCCCTTCGGCCTGCGTGCTGAGCCCCACGGCCTGGGT AAGGGGCTCCTTTTTCTTGTCCAGCTCTCCCAGCATGTTGAGGGCCACGTTGACGGTGGC CAGGAGCGTCCCGAAGGAGGGGGCCACGTCCGAGTCGAAGGTGGGGGTGGTGAAGCTCAG GGAGAAGAGGAGGTTGTACTCCGCCAGGTCCAGGGACTGGTCCAGCAGGATCTGGCAGAC GTCGGGGGTGAAGTGGCGCAGGGCTGCCAGGGTCCTGCTGAGGATCTTGAGGAGGCCGTA CTGGACCGCGTGCAAGGCGCGCTGCTCCGCGGCCTCTGTGTCGGGCGTGGGCTGCTTGGA GGAGGAGGAGGAGGAGCAGGAAGGGGCAGCCGTGGGGGGCCGCTGGGCCCGGGGAGCAAC GGCCGAGGGGAGGCCCTCCCCATTTTTGTTCTGCAGGTAGTGCTGTAGCATCTTGCGGCT ATGCAGGAGGCAGGTGCAGGCCTGGCACAGGTAGCCCAGGTTTACCTGGACGTCCCGCAT GAGCTGGGGCAGGTGGAAGTGCCACTCCTTCATGAAGCTGGACAGCTGCAGGATGAAGCC CACAGTGTGGTCCGCCTCCTCCAGGCAGGCCAGACTCTGCACAGTCCTCACCGCGTTGAG GCACTGTAGGGTGCGCTCCTGGTGGACCCCCACGAAGTCCAGGGCCTCGGTCAGGAAGTT GTAGCGCAACGTCTTGAGGAGCCGCTCCATCAGAGACATGGACAGGCGGTAGACACCCGG CCACGAGGGGGCATCCAGGGACTTCCGAGAGGCGCTGGGCGTCTGTGCTGTCCCATTGGT GCTGAGCTGGTACACACTCAGGAGGGGCAGACAGATGCTCTGGGTGATGCCGGCTCCGGC CACTGCTGTGGCTCCCTGCTGGGTGCGAGCCAGGGTGAGGAGCAGGTGCAGCGCAGCCTC GGTGAAGTGCAGGTTCTGCTTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTCTATAAACAGTATTTTAATATTTGTATAAATAGACCACAGTATTACCA AAAACTGCAAGAACAGCATGGAAAACAGACTCTCAAACCCGTGCACGCAGCCCCTCGTGG CTGCCCATGACGGTGGCCCCCCTCACCCTGGCCAGGAATGGGTGCTGCGTGGAAGGAGAG GAATGCACCTCTCTGGGGAGCGCTGAAGGCGGCAGGCTCGGGGCTCCCCACCCCTGCCGC TGACCTCTTGATCTATTACAAAAATAATTCCAGGTGGCGGGGGCGGGGAGTTGTGACCCC TCTGGGAAGAGAGCGATGGGCTGCTCTCAGCCCCAGACGGGCCCTGTGGGGCCAGCAGTG CCCCCGCGGCCCAGAGCCACCCAGCAGCTGGTGGAGAGTGGTAGGTGGGCGGCAGCCGCG GCCCTATCTCTGCACGTGGCGGACAAAGGCCTGCACGAGCTGGATCAGAGGCTCCTGGCT CTCAGGGCTGGCCTTGGAGACAGAAGCGGACTTGCCCTGAGGCGACGGCAAGACGCCCGC GGCAGGGGAGCTGGGGGCTCCCCGGCGGAAGTAGCGGGAGAGGCTGGACAGCAGAGTGCT CAGCTCCGAGCTGAGCTCTTGCTTCATCCGCTGCTTGTCGCGGGGGTGCACAGCCGGGTC CCTAAGGTACCGCATTGCCTGGGAGATGAGCAGGTAGAAGCAGTTCTCCATGGTGAACAG CAGCAGGGACTTCAGCGTTCTGGTCCCTTCGGCCTGCGTGCTGAGCCCCACGGCCTGGGT AAGGGGCTCCTTTTTCTTGTCCAGCTCTCCCAGCATGTTGAGGGCCACGTTGACGGTGGC CAGGAGCGTCCCGAAGGAGGGGGCCACGTCCGAGTCGAAGGTGGGGGTGGTGAAGCTCAG GGAGAAGAGGAGGTTGTACTCCGCCAGGTCCAGGGACTGGTCCAGCAGGATCTGGCAGAC GTCGGGGGTGAAGTGGCGCAGGGCTGCCAGGGTCCTGCTGAGGATCTTGAGGAGGCCGTA CTGGACCGCGTGCAAGGCGCGCTGCTCCGCGGCCTCTGTGTCGGGCGTGGGCTGCTTGGA GGAGGAGGAGGAGGAGCAGGAAGGGGCAGCCGTGGGGGGCCGCTGGGCCCGGGGAGCAAC GGCCGAGGGGAGGCCCTCCCCATTTTTGTTCTGCAGGTAGTGCTGTAGCATCTTGCGGCT ATGCAGGAGGCAGGTGCAGGCCTGGCACAGGTAGCCCAGGTTTACCTGGACGTCCCGCAT GAGCTGGGGCAGGTGGAAGTGCCACTCCTTCATGAAGCTGGACAGCTGCAGGATGAAGCC CACAGTGTGGTCCGCCTCCTCCAGGCAGGCCAGACTCTGCACAGTCCTCACCGCGTTGAG GCACTGTAGGGTGCGCTCCTGGTGGACCCCCACGAAGTCCAGGGCCTCGGTCAGGAAGTT GTAGCGCAACGTCTTGAGGAGCCGCTCCATCAGAGACATGGACAGGCGGTAGACACCCGG CCACGAGGGGGCATCCAGGGACTTCCGAGAGGCGCTGGGCGTCTGTGCTGTCCCATTGGT GCTGAGCTGGTACACACTCAGGAGGGGCAGACAGATGCTCTGGGTGATGCCGGCTCCGGC CACTGCTGTGGCTCCCTGCTGGGTGCGAGCCAGGGTGAGGAGCAGGTGCAGCGCAGCCTC GGTGAAGTGCAGGTTCTGCTTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 453-604, + strand, RNAz p=0.832456 | |
| 1080-1173, + strand, RNAz p=0.852604 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 453-604, + strand, RNAz p=0.832456 | |
| 1080-1173, + strand, RNAz p=0.852604 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 9-604, gnl|bosTau2|chr11 (78809507-78808895) | |
| 9-604, gnl|Hg17|chr9 (128848930-128848331) | |
| 9-604, gnl|Mm7|chr2 (30351576-30351009) | |
| 937-1173, gnl|bosTau2|chr11 (78807981-78807745) | |
| 937-1173, gnl|canFam2|chr9 (58003984-58003767) | |
| 937-1173, gnl|danRer3|chr21 (712410-712223) | |
| 937-1173, gnl|fr1|chrUn (59149548-59149338) | |
| 937-1173, gnl|galGal2|chr17 (5398761-5398574) | |
| 937-1173, gnl|hg17|chr9 (128847123-128847333) | |
| 937-1173, gnl|Hg17|chr9 (128847363-128847134) | |
| 937-1173, gnl|loxAfr1|scaffold_48054 (3266-3486) | |
| 937-1173, gnl|mm7|chr2 (30349831-30350071) | |
| 937-1173, gnl|Mm7|chr2 (30350101-30349842) | |
| 937-1173, gnl|monDom2|scaffold_51 (3589638-3589838) | |
| 937-1173, gnl|oryCun1|scaffold_160656 (6760-6547) | |
| 937-1173, gnl|panTro1|chr11 (113688394-113688604) | |
| 937-1173, gnl|rheMac2|chr15 (9844973-9844763) | |
| 937-1173, gnl|rn3|chr3 (9386686-9386908) | |
| 937-1173, gnl|tetNig1|chr4 (4141390-4141183) | |
| 937-1173, gnl|xenTro1|scaffold_82 (446606-446419) | |
| 1384-1544, gnl|bosTau2|chr11 (78806541-78806381) | |
| 1384-1544, gnl|canFam2|chr9 (58005842-58005697) | |
| 1384-1544, gnl|danRer3|chr21 (715631-715492) | |
| 1384-1544, gnl|dasNov1|scaffold_169131 (1110-1255) | |
| 1384-1544, gnl|echTel1|scaffold_270204 (3887-4032) | |
| 1384-1544, gnl|fr1|chrUn (59150128-59150020) | |
| 1384-1544, gnl|hg17|chr9 (128844627-128844772) | |
| 1384-1544, gnl|Hg17|chr9 (128844808-128844648) | |
| 1384-1544, gnl|loxAfr1|scaffold_216008 (1052-907) | |
| 1384-1544, gnl|mm7|chr2 (30347880-30348022) | |
| 1384-1544, gnl|Mm7|chr2 (30348058-30347898) | |
| 1384-1544, gnl|monDom2|scaffold_51 (3587834-3587991) | |
| 1384-1544, gnl|oryCun1|scaffold_160656 (8295-8153) | |
| 1384-1544, gnl|panTro1|chr11_random (6844012-6843867) | |
| 1384-1544, gnl|rheMac2|chr15 (9847996-9847851) | |
| 1384-1544, gnl|rn3|chr3 (9385477-9385620) | |
| 1384-1544, gnl|tetNig1|chr4 (4141984-4141869) | |
| 1384-1544, gnl|xenTro1|scaffold_82 (447231-447105) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-604, gnl|bosTau2|chr11 (78809507-78808895) | |
| 9-604, gnl|Hg17|chr9 (128848930-128848331) | |
| 9-604, gnl|Mm7|chr2 (30351576-30351009) | |
| 937-1173, gnl|bosTau2|chr11 (78807981-78807745) | |
| 937-1173, gnl|canFam2|chr9 (58003984-58003767) | |
| 937-1173, gnl|danRer3|chr21 (712410-712223) | |
| 937-1173, gnl|fr1|chrUn (59149548-59149338) | |
| 937-1173, gnl|galGal2|chr17 (5398761-5398574) | |
| 937-1173, gnl|hg17|chr9 (128847123-128847333) | |
| 937-1173, gnl|Hg17|chr9 (128847363-128847134) | |
| 937-1173, gnl|loxAfr1|scaffold_48054 (3266-3486) | |
| 937-1173, gnl|mm7|chr2 (30349831-30350071) | |
| 937-1173, gnl|Mm7|chr2 (30350101-30349842) | |
| 937-1173, gnl|monDom2|scaffold_51 (3589638-3589838) | |
| 937-1173, gnl|oryCun1|scaffold_160656 (6760-6547) | |
| 937-1173, gnl|panTro1|chr11 (113688394-113688604) | |
| 937-1173, gnl|rheMac2|chr15 (9844973-9844763) | |
| 937-1173, gnl|rn3|chr3 (9386686-9386908) | |
| 937-1173, gnl|tetNig1|chr4 (4141390-4141183) | |
| 937-1173, gnl|xenTro1|scaffold_82 (446606-446419) | |
| 1384-1544, gnl|bosTau2|chr11 (78806541-78806381) | |
| 1384-1544, gnl|canFam2|chr9 (58005842-58005697) | |
| 1384-1544, gnl|danRer3|chr21 (715631-715492) | |
| 1384-1544, gnl|dasNov1|scaffold_169131 (1110-1255) | |
| 1384-1544, gnl|echTel1|scaffold_270204 (3887-4032) | |
| 1384-1544, gnl|fr1|chrUn (59150128-59150020) | |
| 1384-1544, gnl|hg17|chr9 (128844627-128844772) | |
| 1384-1544, gnl|Hg17|chr9 (128844808-128844648) | |
| 1384-1544, gnl|loxAfr1|scaffold_216008 (1052-907) | |
| 1384-1544, gnl|mm7|chr2 (30347880-30348022) | |
| 1384-1544, gnl|Mm7|chr2 (30348058-30347898) | |
| 1384-1544, gnl|monDom2|scaffold_51 (3587834-3587991) | |
| 1384-1544, gnl|oryCun1|scaffold_160656 (8295-8153) | |
| 1384-1544, gnl|panTro1|chr11_random (6844012-6843867) | |
| 1384-1544, gnl|rheMac2|chr15 (9847996-9847851) | |
| 1384-1544, gnl|rn3|chr3 (9385477-9385620) | |
| 1384-1544, gnl|tetNig1|chr4 (4141984-4141869) | |
| 1384-1544, gnl|xenTro1|scaffold_82 (447231-447105) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| jej (0.0989218) |