Non-Coding RNA Search

Ss1.1-Pig4-TMW8060F15.5

Sequence:


               
               CTGAAGATGTGAACCCTGGAGGGAACAAAGACAACACGGAGATACCCAGATCCCAGGTGC
ACAGCTGGTCTGTGAAACCCGTGGACTTGACCTCTGATGAGTAACCCTTTCTGGAGCCAG
CTCAGCATCTCAGAGCCCACGGTCAAGCATTCGTCAGGAACTGAGCAAGGATCAACCTGC
AGTGACAGCCATGGCAGGAATATAAGCTTCTGCCAAGGCTGCCCATGCAAGTGAGGAACT
ACAAGCTGTCATGGAGCTTGGCTGATCTGTACCATGGCTCAGAATAGAGCTAAGACCCTG
GGCCCTATGGACAGACCTGGACATGCCCAGAGTTTGTTTTGAAGATTAGAAGTTCACAAA
CCACTCTGCCTTTGAAATATAATCTAAAGGACTTTGGACCCTCTTTTCCTGTTCCCTTTG
ACTCAACCGTATTCTGAATATCTGCTTGGAATGAGCCATCTGAAAAAAACAGAGAGTATG
TTTGGATCTCAGCAAAGCACTATTCCGCAAGACCTGGCAAAGCCCAGAGAAGGGTGGGCC
CATCTTCTGGAGGTCTAGTACACCAATCACAGGTACTGATGGGACCTGGCTCCTGCCCTC
CAGTCACCCACTTGAGGTTTCTGCTGGAAGTTCAGAGAGAACACTTTGATCGATCAAGTG
TTTGCAAGATCACTGGTGTTGTAACGGCAAGCAAAGCAGATTGCTGTAGGTATCAGACCT
TGCTCCATCCTGGCAAGGGGTGTGCTGGGTCAGGATTTGCCGGTGAAGTGGACTGTCTGC
TTTGGGAGGTAACTGAAAGCAGGCAAAGGGTAAGAGGCATGCGGGGAGGTGTTCAATTCA
AGCACTGAAATCCCCTTTCAGGATTATTTTGGAGCGAGGTGGGAGGAACACTGGAATGCA
TAAATCCTGATTGATCGAACTGAGGCATCTCAACCGTGGAGCACAGAGATATGTCTGTGC
CACAGAAGTCGATGACAAGGGGATCTGGGAAGAAGGCCAAGAACGTGCAGCTGTGCTCCA
GGCTGGCCTCTGGCAGCCTGTATGACTCAGCTGCAGCTGCCCAGCTGCTCCTAAGGGGTA
GTGTAAGTGCCAGCATGAAAGAGAGGGTGCCTCAGGGAAGTAGATTGGTTCCACAGGTCT
CTGAAGATTCCAATCCCCTGTGGGACCTCTGACCTAGAAGTGAACCTAAAGCCATCCTAT
TCATCCAACTGCTTTGGACCCTGGTTATTTTGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGATGTGAACCCTGGAGGGAACAAAGACAACACGGAGATACCCAGATCCCAGGTGC
ACAGCTGGTCTGTGAAACCCGTGGACTTGACCTCTGATGAGTAACCCTTTCTGGAGCCAG
CTCAGCATCTCAGAGCCCACGGTCAAGCATTCGTCAGGAACTGAGCAAGGATCAACCTGC
AGTGACAGCCATGGCAGGAATATAAGCTTCTGCCAAGGCTGCCCATGCAAGTGAGGAACT
ACAAGCTGTCATGGAGCTTGGCTGATCTGTACCATGGCTCAGAATAGAGCTAAGACCCTG
GGCCCTATGGACAGACCTGGACATGCCCAGAGTTTGTTTTGAAGATTAGAAGTTCACAAA
CCACTCTGCCTTTGAAATATAATCTAAAGGACTTTGGACCCTCTTTTCCTGTTCCCTTTG
ACTCAACCGTATTCTGAATATCTGCTTGGAATGAGCCATCTGAAAAAAACAGAGAGTATG
TTTGGATCTCAGCAAAGCACTATTCCGCAAGACCTGGCAAAGCCCAGAGAAGGGTGGGCC
CATCTTCTGGAGGTCTAGTACACCAATCACAGGTACTGATGGGACCTGGCTCCTGCCCTC
CAGTCACCCACTTGAGGTTTCTGCTGGAAGTTCAGAGAGAACACTTTGATCGATCAAGTG
TTTGCAAGATCACTGGTGTTGTAACGGCAAGCAAAGCAGATTGCTGTAGGTATCAGACCT
TGCTCCATCCTGGCAAGGGGTGTGCTGGGTCAGGATTTGCCGGTGAAGTGGACTGTCTGC
TTTGGGAGGTAACTGAAAGCAGGCAAAGGGTAAGAGGCATGCGGGGAGGTGTTCAATTCA
AGCACTGAAATCCCCTTTCAGGATTATTTTGGAGCGAGGTGGGAGGAACACTGGAATGCA
TAAATCCTGATTGATCGAACTGAGGCATCTCAACCGTGGAGCACAGAGATATGTCTGTGC
CACAGAAGTCGATGACAAGGGGATCTGGGAAGAAGGCCAAGAACGTGCAGCTGTGCTCCA
GGCTGGCCTCTGGCAGCCTGTATGACTCAGCTGCAGCTGCCCAGCTGCTCCTAAGGGGTA
GTGTAAGTGCCAGCATGAAAGAGAGGGTGCCTCAGGGAAGTAGATTGGTTCCACAGGTCT
CTGAAGATTCCAATCCCCTGTGGGACCTCTGACCTAGAAGTGAACCTAAAGCCATCCTAT
TCATCCAACTGCTTTGGACCCTGGTTATTTTGTACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-278, - strand, RNAz p=0.989746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.989746

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               151-251, - strand, RNAmicro p=0.988923

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               151-251, - strand, RNAmicro p=0.988923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1234, gnl|bosTau2|chr1 (43728319-43729572)
               

               
               1-1234, gnl|Hg17|chr3 (195790658-195789372)
               

               
               1-1234, gnl|Mm7|chr16 (30188830-30187683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1234, gnl|bosTau2|chr1 (43728319-43729572)
               

               
               1-1234, gnl|Hg17|chr3 (195790658-195789372)
               

               
               1-1234, gnl|Mm7|chr16 (30188830-30187683)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.543183)
               

               
               nco (0.323468)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               nco (0.323468)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               bla (0.124347)

	1-1234, gnl\|bosTau2\|chr1 (43728319-43729572)
	1-1234, gnl\|Hg17\|chr3 (195790658-195789372)
	1-1234, gnl\|Mm7\|chr16 (30188830-30187683)

	fce (0.543183)
	nco (0.323468)
	mcp (0.170648)
	eye (0.170503)
	nca (0.136874)
	bla (0.124347)