Ss1.1-Pig4-TMW8060F20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGCTACTCTGCATTTCATAGTTTGCAACTTTCAGCTGGAAGTGACAGCATGGATTCTT GGTATCTGCCTTCGTTTCTGTTCGTTGCTGCCCTCCTCCTGGTTTCTGGCTTGCCAGCTC CAGAAAACTTCGACGTAGATGGTGGACTTGACCGGGATATATTTGATATCAATGAAGATT TGGGACTGGATCTTTTTGAGGGAGACATCAGTCTTGATGGGGTACAAGAAAGAAATTCCA TCGTTGGAGAAGGATATAGGTGGCCTCATACTATTCCATATGTTCTAGACGATAGCTTGG AAATGAATGCCAGAGGAGTTATCCTGGAGGCATTTGAACGCTATCGCCTGAAAACATGCA TTGACTTCAAGCCTTGGTCTGGAGAAGCCAACTATATATCGGTGTTCAAGGGCAGTGGCT GCTGGTCTTCAGTGGGAAATCAGCACGTTGGGAAGCAAAATCTCTCCATTGGACATAACT GTGACAGAACAGCAACCGTTCAACATGAATTTCTCCATGCACTGGGATTCTTTCATGAGC AGTCGCGATCTGACCGAGATGACTATGTCAGCATAATATGGGACAGAATTACTCCAGGCA AAGAGAACAATTTTAAAGCCTATACTGACGAAGAAACGGATTCCCTGAATGTTCCCTATG ATTACAACTCAGTAATGCACTACAGTAAAACTGCATTCCAGATTGGATCAGAACCAACAA TTGTGACAAGAATCTCAGACTTCATGGATGTGATCGGCCAGCGATTGGATTTCAGTGACC ATGATCTCTTAAAGTTGAATCGACTCTATAACTGCTCCTCTTCCTTGAGCTTTATGGACT CGTGCGATTTTGAACTGGAAAACGTGTGTGGTATGATTCAAAGTTCAGAAGATAGTGCTG ACTGGCAGCGGGTCTCCCAGGTTCCCGAGGGGCCAGAGAGCGATCACTCCAACATGGGCC AGTGCAAAGGTTCTGGCTTCTTCATGCATTTCAGCAGCAGCTCTGTAAATGTCGGGGACA CAGCAGTGCTGGAAAGTAGAAAACTCTACCCCAAACGAGGTTTTCAGTGCCTGCAGTTCT TTTTATATAACAGTGGACATGAAAATGACCAGCTGGACATCTATATCCGGGAGTATTCTG GAGACAATGTGAACGGTATTCTAATCCTTGTGGAAGAAATAAAAGATATACCCCTTGGGA GCTGGCAGCTTTACCACGTTACATTGAAGGTGACCAACAAATTTAGAGTAGTGTTTAGAG GGGTCAGAGGTGCTGGTGACTCACTGGGTGGCCTGTCTATCGATGACATCAATCTTTCAG AAACACAGTGCCCTCATCATACCTGGCACATAAGGAATTTCACACAGTACCTTAGCGACC CCAATGGAGCTCTGTTTAGCCCTCCATTTTATTCGTCTAAAGGTTATGCCTTTCAGATTT ACATGACCCTAACCAATTTGACTAAGATAGGAATTTATTTCCACTTGATCTCTGGAGCCA ATGATGATCAGTTACAGTGGCCGTGTCCTTGGCAACAAGCCACGATGACAATCTTGGATC AGAATCCTGACATTCGACAGCGTATGTCCAACGGGCGGAGTATAACCACAGACCCCTCTT TGACCTCGGATGACGGAACCTATTTTTGGGACAGGCCTTCCAAAGTGGGAACAGAAGCTT TTTTCCCAAATGGAACTCAATTTAAAAGAAGTAGAGGCTATGGATCCAGTTCCTTTATAA CCTATGAGAGGCTGAAGAGCAGGGATTTTATCAAAGGAAATGATGTTTACATCCTACTGA CAGTGGAAGACATATCCCACCTTAATTCTACACAAGACGAACCAGTCCCAACCTCAAGTG TCAGTGACCTTTGCGCATTCTTCAGGTGTGAGAATGATGGCATCTGCCTTGTCCGAAATG GCAACGCCGAGTGCAGGTGTCCCTCAGGGGAAGACTGGTGGTACATGGGGAAAAGGTGTG AAAAGAGAGGCTCCAGGAGAGACACCATTGTCATCGCCACTTCTTCCACTGCTGCCGTGT TCGCCCTGATGCTGGTCATCACCCTTGTCAGTGTCTACTGTACCCGGAAGAAGTATCGTA AAGAGCCAGGTTCACATACAGCAAATACGACTCTGGAAAATCAATATGCACTGTGAAGAG GAACTCAGCAATGTGGCTGGCAAATGAGAGCTGCTTCATCATGGTTTCACCTACAATGCA TTACAACTGCGTCATTCTTCTATAAATGGATCTTCTCCGTAAATAGCTGGGTATACCATA AATCATTATTTCGATAAAAATCGAATTGGTGAAATGTCACTTGTGTTTTTGTTTTTAATG GAGGGGAAGTAGGAAAATTAAAAATAAAAATACATAATGGAGAGGAAGCGATTCAGGTTC CTCTGGAGGCGCAATATTAAGATGGAAAGCATCTCCAAATTACCGCGCTGTCTCTTTGGG GGCCAAGTGTAGTGGTCTCACAGGTGATCATCTGAAAGTCCACTGGGGAGATCCCGTTGT GGCTCAGCAGGTTACGAACCTGACTAGCATCCACAAGGACGTAGGTTCAATCCCTGGCCT CTCTCAGAAAGTTAAGGATCTGGCATTGCCATGAGCTGCCGTGTAGGTCACAGATACGGC TCAAATCCCGCTTTGCTGTGGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGCTACTCTGCATTTCATAGTTTGCAACTTTCAGCTGGAAGTGACAGCATGGATTCTT GGTATCTGCCTTCGTTTCTGTTCGTTGCTGCCCTCCTCCTGGTTTCTGGCTTGCCAGCTC CAGAAAACTTCGACGTAGATGGTGGACTTGACCGGGATATATTTGATATCAATGAAGATT TGGGACTGGATCTTTTTGAGGGAGACATCAGTCTTGATGGGGTACAAGAAAGAAATTCCA TCGTTGGAGAAGGATATAGGTGGCCTCATACTATTCCATATGTTCTAGACGATAGCTTGG AAATGAATGCCAGAGGAGTTATCCTGGAGGCATTTGAACGCTATCGCCTGAAAACATGCA TTGACTTCAAGCCTTGGTCTGGAGAAGCCAACTATATATCGGTGTTCAAGGGCAGTGGCT GCTGGTCTTCAGTGGGAAATCAGCACGTTGGGAAGCAAAATCTCTCCATTGGACATAACT GTGACAGAACAGCAACCGTTCAACATGAATTTCTCCATGCACTGGGATTCTTTCATGAGC AGTCGCGATCTGACCGAGATGACTATGTCAGCATAATATGGGACAGAATTACTCCAGGCA AAGAGAACAATTTTAAAGCCTATACTGACGAAGAAACGGATTCCCTGAATGTTCCCTATG ATTACAACTCAGTAATGCACTACAGTAAAACTGCATTCCAGATTGGATCAGAACCAACAA TTGTGACAAGAATCTCAGACTTCATGGATGTGATCGGCCAGCGATTGGATTTCAGTGACC ATGATCTCTTAAAGTTGAATCGACTCTATAACTGCTCCTCTTCCTTGAGCTTTATGGACT CGTGCGATTTTGAACTGGAAAACGTGTGTGGTATGATTCAAAGTTCAGAAGATAGTGCTG ACTGGCAGCGGGTCTCCCAGGTTCCCGAGGGGCCAGAGAGCGATCACTCCAACATGGGCC AGTGCAAAGGTTCTGGCTTCTTCATGCATTTCAGCAGCAGCTCTGTAAATGTCGGGGACA CAGCAGTGCTGGAAAGTAGAAAACTCTACCCCAAACGAGGTTTTCAGTGCCTGCAGTTCT TTTTATATAACAGTGGACATGAAAATGACCAGCTGGACATCTATATCCGGGAGTATTCTG GAGACAATGTGAACGGTATTCTAATCCTTGTGGAAGAAATAAAAGATATACCCCTTGGGA GCTGGCAGCTTTACCACGTTACATTGAAGGTGACCAACAAATTTAGAGTAGTGTTTAGAG GGGTCAGAGGTGCTGGTGACTCACTGGGTGGCCTGTCTATCGATGACATCAATCTTTCAG AAACACAGTGCCCTCATCATACCTGGCACATAAGGAATTTCACACAGTACCTTAGCGACC CCAATGGAGCTCTGTTTAGCCCTCCATTTTATTCGTCTAAAGGTTATGCCTTTCAGATTT ACATGACCCTAACCAATTTGACTAAGATAGGAATTTATTTCCACTTGATCTCTGGAGCCA ATGATGATCAGTTACAGTGGCCGTGTCCTTGGCAACAAGCCACGATGACAATCTTGGATC AGAATCCTGACATTCGACAGCGTATGTCCAACGGGCGGAGTATAACCACAGACCCCTCTT TGACCTCGGATGACGGAACCTATTTTTGGGACAGGCCTTCCAAAGTGGGAACAGAAGCTT TTTTCCCAAATGGAACTCAATTTAAAAGAAGTAGAGGCTATGGATCCAGTTCCTTTATAA CCTATGAGAGGCTGAAGAGCAGGGATTTTATCAAAGGAAATGATGTTTACATCCTACTGA CAGTGGAAGACATATCCCACCTTAATTCTACACAAGACGAACCAGTCCCAACCTCAAGTG TCAGTGACCTTTGCGCATTCTTCAGGTGTGAGAATGATGGCATCTGCCTTGTCCGAAATG GCAACGCCGAGTGCAGGTGTCCCTCAGGGGAAGACTGGTGGTACATGGGGAAAAGGTGTG AAAAGAGAGGCTCCAGGAGAGACACCATTGTCATCGCCACTTCTTCCACTGCTGCCGTGT TCGCCCTGATGCTGGTCATCACCCTTGTCAGTGTCTACTGTACCCGGAAGAAGTATCGTA AAGAGCCAGGTTCACATACAGCAAATACGACTCTGGAAAATCAATATGCACTGTGAAGAG GAACTCAGCAATGTGGCTGGCAAATGAGAGCTGCTTCATCATGGTTTCACCTACAATGCA TTACAACTGCGTCATTCTTCTATAAATGGATCTTCTCCGTAAATAGCTGGGTATACCATA AATCATTATTTCGATAAAAATCGAATTGGTGAAATGTCACTTGTGTTTTTGTTTTTAATG GAGGGGAAGTAGGAAAATTAAAAATAAAAATACATAATGGAGAGGAAGCGATTCAGGTTC CTCTGGAGGCGCAATATTAAGATGGAAAGCATCTCCAAATTACCGCGCTGTCTCTTTGGG GGCCAAGTGTAGTGGTCTCACAGGTGATCATCTGAAAGTCCACTGGGGAGATCCCGTTGT GGCTCAGCAGGTTACGAACCTGACTAGCATCCACAAGGACGTAGGTTCAATCCCTGGCCT CTCTCAGAAAGTTAAGGATCTGGCATTGCCATGAGCTGCCGTGTAGGTCACAGATACGGC TCAAATCCCGCTTTGCTGTGGCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr24 (19624631-19624519) | |
| 1-113, gnl|Hg17|chr18 (28023982-28024094) | |
| 1-113, gnl|Mm7|chr18 (21443042-21443154) | |
| 300-418, gnl|bosTau2|chr24 (19607230-19607112) | |
| 300-418, gnl|canFam2|chr7 (60450304-60450213) | |
| 300-418, gnl|danRer3|chr14 (8643870-8643961) | |
| 300-418, gnl|dasNov1|scaffold_7080 (90887-90797) | |
| 300-418, gnl|echTel1|scaffold_259022 (2965-2874) | |
| 300-418, gnl|fr1|chrUn (231016830-231016921) | |
| 300-418, gnl|galGal2|chr2 (105564084-105564175) | |
| 300-418, gnl|hg17|chr18 (28036850-28036941) | |
| 300-418, gnl|Hg17|chr18 (28036853-28036971) | |
| 300-418, gnl|mm7|chr18 (21454793-21454884) | |
| 300-418, gnl|Mm7|chr18 (21454796-21454914) | |
| 300-418, gnl|monDom2|scaffold_4 (123874661-123874570) | |
| 300-418, gnl|oryCun1|scaffold_214746 (39903-39994) | |
| 300-418, gnl|panTro1|chr17 (23944225-23944316) | |
| 300-418, gnl|rheMac2|chr18 (25130772-25130863) | |
| 300-418, gnl|rn3|chr9 (13177281-13177372) | |
| 300-418, gnl|tetNig1|chrUn_random (98105303-98105212) | |
| 300-418, gnl|xenTro1|scaffold_102 (1589466-1589557) | |
| 596-816, gnl|bosTau2|chr24 (19603211-19602991) | |
| 596-816, gnl|Hg17|chr18 (28041211-28041431) | |
| 596-816, gnl|Mm7|chr18 (21459261-21459481) | |
| 817-971, gnl|bosTau2|chr24 (19602059-19601905) | |
| 817-971, gnl|canFam2|chr7 (60446544-60446369) | |
| 817-971, gnl|danRer3|chr14 (8648926-8649092) | |
| 817-971, gnl|dasNov1|scaffold_5165 (12426-12603) | |
| 817-971, gnl|echTel1|scaffold_315500 (87789-87964) | |
| 817-971, gnl|fr1|chrUn (231018058-231018226) | |
| 817-971, gnl|galGal2|chr2 (105572722-105572892) | |
| 817-971, gnl|hg17|chr18 (28042072-28042247) | |
| 817-971, gnl|Hg17|chr18 (28042080-28042234) | |
| 817-971, gnl|loxAfr1|scaffold_321 (195335-195160) | |
| 817-971, gnl|mm7|chr18 (21460035-21460204) | |
| 817-971, gnl|Mm7|chr18 (21460046-21460197) | |
| 817-971, gnl|monDom2|scaffold_4 (123861120-123860945) | |
| 817-971, gnl|oryCun1|scaffold_214746 (44800-44974) | |
| 817-971, gnl|panTro1|chr17 (23949453-23949628) | |
| 817-971, gnl|rheMac2|chr18 (25135989-25136163) | |
| 817-971, gnl|rn3|chr9 (13186649-13186782) | |
| 817-971, gnl|tetNig1|chrUn_random (98104096-98103940) | |
| 817-971, gnl|xenTro1|scaffold_102 (1592590-1592760) | |
| 1184-1625, gnl|bosTau2|chr24 (19596339-19595898) | |
| 1184-1625, gnl|Hg17|chr18 (28047075-28047516) | |
| 1184-1625, gnl|Mm7|chr18 (21463937-21464378) | |
| 1626-1816, gnl|bosTau2|chr24 (19594006-19593816) | |
| 1626-1816, gnl|Hg17|chr18 (28049039-28049229) | |
| 1626-1816, gnl|Mm7|chr18 (21465638-21465828) | |
| 1931-2156, gnl|bosTau2|chr24 (19591293-19591068) | |
| 1931-2156, gnl|canFam2|chr7 (60438790-60438608) | |
| 1931-2156, gnl|dasNov1|scaffold_5165 (23508-23690) | |
| 1931-2156, gnl|echTel1|scaffold_315500 (101545-101728) | |
| 1931-2156, gnl|fr1|chrUn (231019693-231019858) | |
| 1931-2156, gnl|galGal2|chr2 (105583553-105583713) | |
| 1931-2156, gnl|hg17|chr18 (28051698-28051881) | |
| 1931-2156, gnl|Hg17|chr18 (28051716-28051941) | |
| 1931-2156, gnl|loxAfr1|scaffold_321 (185440-185256) | |
| 1931-2156, gnl|mm7|chr18 (21467978-21468165) | |
| 1931-2156, gnl|Mm7|chr18 (21468000-21468225) | |
| 1931-2156, gnl|monDom2|scaffold_4 (123845338-123845167) | |
| 1931-2156, gnl|oryCun1|scaffold_84313 (3047-3229) | |
| 1931-2156, gnl|panTro1|chr17 (23959146-23959329) | |
| 1931-2156, gnl|rheMac2|chr18 (25145758-25145941) | |
| 1931-2156, gnl|tetNig1|chrUn_random (98102395-98102212) | |
| 1931-2156, gnl|xenTro1|scaffold_102 (1599474-1599618) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr24 (19624631-19624519) | |
| 1-113, gnl|Hg17|chr18 (28023982-28024094) | |
| 1-113, gnl|Mm7|chr18 (21443042-21443154) | |
| 300-418, gnl|bosTau2|chr24 (19607230-19607112) | |
| 300-418, gnl|canFam2|chr7 (60450304-60450213) | |
| 300-418, gnl|danRer3|chr14 (8643870-8643961) | |
| 300-418, gnl|dasNov1|scaffold_7080 (90887-90797) | |
| 300-418, gnl|echTel1|scaffold_259022 (2965-2874) | |
| 300-418, gnl|fr1|chrUn (231016830-231016921) | |
| 300-418, gnl|galGal2|chr2 (105564084-105564175) | |
| 300-418, gnl|hg17|chr18 (28036850-28036941) | |
| 300-418, gnl|Hg17|chr18 (28036853-28036971) | |
| 300-418, gnl|mm7|chr18 (21454793-21454884) | |
| 300-418, gnl|Mm7|chr18 (21454796-21454914) | |
| 300-418, gnl|monDom2|scaffold_4 (123874661-123874570) | |
| 300-418, gnl|oryCun1|scaffold_214746 (39903-39994) | |
| 300-418, gnl|panTro1|chr17 (23944225-23944316) | |
| 300-418, gnl|rheMac2|chr18 (25130772-25130863) | |
| 300-418, gnl|rn3|chr9 (13177281-13177372) | |
| 300-418, gnl|tetNig1|chrUn_random (98105303-98105212) | |
| 300-418, gnl|xenTro1|scaffold_102 (1589466-1589557) | |
| 596-816, gnl|bosTau2|chr24 (19603211-19602991) | |
| 596-816, gnl|Hg17|chr18 (28041211-28041431) | |
| 596-816, gnl|Mm7|chr18 (21459261-21459481) | |
| 817-971, gnl|bosTau2|chr24 (19602059-19601905) | |
| 817-971, gnl|canFam2|chr7 (60446544-60446369) | |
| 817-971, gnl|danRer3|chr14 (8648926-8649092) | |
| 817-971, gnl|dasNov1|scaffold_5165 (12426-12603) | |
| 817-971, gnl|echTel1|scaffold_315500 (87789-87964) | |
| 817-971, gnl|fr1|chrUn (231018058-231018226) | |
| 817-971, gnl|galGal2|chr2 (105572722-105572892) | |
| 817-971, gnl|hg17|chr18 (28042072-28042247) | |
| 817-971, gnl|Hg17|chr18 (28042080-28042234) | |
| 817-971, gnl|loxAfr1|scaffold_321 (195335-195160) | |
| 817-971, gnl|mm7|chr18 (21460035-21460204) | |
| 817-971, gnl|Mm7|chr18 (21460046-21460197) | |
| 817-971, gnl|monDom2|scaffold_4 (123861120-123860945) | |
| 817-971, gnl|oryCun1|scaffold_214746 (44800-44974) | |
| 817-971, gnl|panTro1|chr17 (23949453-23949628) | |
| 817-971, gnl|rheMac2|chr18 (25135989-25136163) | |
| 817-971, gnl|rn3|chr9 (13186649-13186782) | |
| 817-971, gnl|tetNig1|chrUn_random (98104096-98103940) | |
| 817-971, gnl|xenTro1|scaffold_102 (1592590-1592760) | |
| 1184-1625, gnl|bosTau2|chr24 (19596339-19595898) | |
| 1184-1625, gnl|Hg17|chr18 (28047075-28047516) | |
| 1184-1625, gnl|Mm7|chr18 (21463937-21464378) | |
| 1626-1816, gnl|bosTau2|chr24 (19594006-19593816) | |
| 1626-1816, gnl|Hg17|chr18 (28049039-28049229) | |
| 1626-1816, gnl|Mm7|chr18 (21465638-21465828) | |
| 1931-2156, gnl|bosTau2|chr24 (19591293-19591068) | |
| 1931-2156, gnl|canFam2|chr7 (60438790-60438608) | |
| 1931-2156, gnl|dasNov1|scaffold_5165 (23508-23690) | |
| 1931-2156, gnl|echTel1|scaffold_315500 (101545-101728) | |
| 1931-2156, gnl|fr1|chrUn (231019693-231019858) | |
| 1931-2156, gnl|galGal2|chr2 (105583553-105583713) | |
| 1931-2156, gnl|hg17|chr18 (28051698-28051881) | |
| 1931-2156, gnl|Hg17|chr18 (28051716-28051941) | |
| 1931-2156, gnl|loxAfr1|scaffold_321 (185440-185256) | |
| 1931-2156, gnl|mm7|chr18 (21467978-21468165) | |
| 1931-2156, gnl|Mm7|chr18 (21468000-21468225) | |
| 1931-2156, gnl|monDom2|scaffold_4 (123845338-123845167) | |
| 1931-2156, gnl|oryCun1|scaffold_84313 (3047-3229) | |
| 1931-2156, gnl|panTro1|chr17 (23959146-23959329) | |
| 1931-2156, gnl|rheMac2|chr18 (25145758-25145941) | |
| 1931-2156, gnl|tetNig1|chrUn_random (98102395-98102212) | |
| 1931-2156, gnl|xenTro1|scaffold_102 (1599474-1599618) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cut (2.37893) | |
| ute (1.46063) | |
| nje (0.99552) | |
| jej (0.494609) | |
| nco (0.323468) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pla (0.133672) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (2.37893) | |
| ute (1.46063) | |
| nje (0.99552) | |
| jej (0.494609) | |
| nco (0.323468) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pla (0.133672) |