Ss1.1-Pig4-TMW8060F22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGGCCGACAAAATGGATATGTCTCTGGACGACATCATTAAGCTGAACCGGAGCCAGCG AGGCGGCCGCGGCGGGGGCAGGGGCCGCGGCCGGGCCGGCTCCCAGGGCGGCCGCGGCGG CGGGGCGCAGGCTGCCGCGCGAGTGAGCCGAGGCGGCGGACCCATTCGGAACCGGCCGGC CATCGCCCGCGGCGCGGCGGGCGGCGGCAGGAACCGGCCGGCGCCCTACAGCAGGCCGAA ACAGCTTCCTGACAAATGGCAACACGACCTTTTCGACAGCGGTTTTGGGGGTGGTGCCGG CGTGGAGACCGGTGGGAAACTGCTGGTGTCAAATCTGGATTTTGGCGTGTCCGACGCTGA TATTCAGGAACTCTTTGCTGAGTTTGGAACTCTGAAGAAGGCGGCTGTGCACTATGACCG ATCGGGCCGCAGTTTGGGGACCGCTGATGTGCACTTTGAGCGGAAAGCAGACGCCCTGAA AGCTATGAAGCAGTACAACGGCGTACCCCTGGACGGTCGCCCCATGAACATTCAGCTCGT CACCTCACAGATCGACACGCAGCGGAGGCCTGCACAGAGTGTAAACAGAGGGGGCATGAC CAGAAACCGTGGTTCCGGAGGTTTCGGTGGCGGTGGCGGCACCCGGAGAGGCACCCGTGG CGGCAGCCGTGGCAGAGGCAGAGGCACCGGCAGGAGTTCGAAGCAGCAGCTTTCCGCGGA GGAGTTGGACGCCCAGCTGGACGCTTACAACGCCAGGATGGACACCAGCTAAGCAGACCG GCAAATCCGTGCGTGGACCAGGACCCAGACGTCGCGTCCGTGCTCCCCGGAGGGGGGGGT GACAGACTGGGGCTGAGTGGCCAGTGATGGATTTGTTTCTTTTATGTTTTAAAATAGGGT TTAAAATTCATGTAAAGGTTTCTTTTTTTTTTCTTTTTCTTTTTTTTTAAATCCTGAAGC AGACCTGTTTTGTACCGAGTTATTTTTGGGATAAATTTTACTGGTTGCAGTTGTGGAGAA GGTGGCGTTTCCACCTTTGCCATAATAAACTAGAAACGTGTGTAGAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGGCCGACAAAATGGATATGTCTCTGGACGACATCATTAAGCTGAACCGGAGCCAGCG AGGCGGCCGCGGCGGGGGCAGGGGCCGCGGCCGGGCCGGCTCCCAGGGCGGCCGCGGCGG CGGGGCGCAGGCTGCCGCGCGAGTGAGCCGAGGCGGCGGACCCATTCGGAACCGGCCGGC CATCGCCCGCGGCGCGGCGGGCGGCGGCAGGAACCGGCCGGCGCCCTACAGCAGGCCGAA ACAGCTTCCTGACAAATGGCAACACGACCTTTTCGACAGCGGTTTTGGGGGTGGTGCCGG CGTGGAGACCGGTGGGAAACTGCTGGTGTCAAATCTGGATTTTGGCGTGTCCGACGCTGA TATTCAGGAACTCTTTGCTGAGTTTGGAACTCTGAAGAAGGCGGCTGTGCACTATGACCG ATCGGGCCGCAGTTTGGGGACCGCTGATGTGCACTTTGAGCGGAAAGCAGACGCCCTGAA AGCTATGAAGCAGTACAACGGCGTACCCCTGGACGGTCGCCCCATGAACATTCAGCTCGT CACCTCACAGATCGACACGCAGCGGAGGCCTGCACAGAGTGTAAACAGAGGGGGCATGAC CAGAAACCGTGGTTCCGGAGGTTTCGGTGGCGGTGGCGGCACCCGGAGAGGCACCCGTGG CGGCAGCCGTGGCAGAGGCAGAGGCACCGGCAGGAGTTCGAAGCAGCAGCTTTCCGCGGA GGAGTTGGACGCCCAGCTGGACGCTTACAACGCCAGGATGGACACCAGCTAAGCAGACCG GCAAATCCGTGCGTGGACCAGGACCCAGACGTCGCGTCCGTGCTCCCCGGAGGGGGGGGT GACAGACTGGGGCTGAGTGGCCAGTGATGGATTTGTTTCTTTTATGTTTTAAAATAGGGT TTAAAATTCATGTAAAGGTTTCTTTTTTTTTTCTTTTTCTTTTTTTTTAAATCCTGAAGC AGACCTGTTTTGTACCGAGTTATTTTTGGGATAAATTTTACTGGTTGCAGTTGTGGAGAA GGTGGCGTTTCCACCTTTGCCATAATAAACTAGAAACGTGTGTAGAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 945-1067, - strand, RNAz p=0.975535 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 945-1067, - strand, RNAz p=0.975535 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-235, gnl|bosTau2|chr19 (45413036-45412799) | |
| 1-235, gnl|Hg17|chr17 (77442732-77442495) | |
| 1-235, gnl|Mm7|chr11 (120707384-120707150) | |
| 357-517, gnl|bosTau2|chr19 (45410716-45410556) | |
| 357-517, gnl|canFam2|chr9 (3401563-3401393) | |
| 357-517, gnl|canFam2|chr9 (3401563-3401393) | |
| 357-517, gnl|danRer3|chr17 (10943988-10943827) | |
| 357-517, gnl|danRer3|chr17 (10943988-10943827) | |
| 357-517, gnl|echTel1|scaffold_196496 (6514-6684) | |
| 357-517, gnl|echTel1|scaffold_196496 (6514-6684) | |
| 357-517, gnl|fr1|chrUn (128698389-128698235) | |
| 357-517, gnl|fr1|chrUn (128698389-128698235) | |
| 357-517, gnl|galGal2|chr3_random (656505-656677) | |
| 357-517, gnl|galGal2|chr3_random (656510-656677) | |
| 357-517, gnl|hg17|chr17 (77440344-77440514) | |
| 357-517, gnl|Hg17|chr17 (77440512-77440352) | |
| 357-517, gnl|hg17|chr17_random (1946295-1946465) | |
| 357-517, gnl|loxAfr1|scaffold_86210 (8078-8248) | |
| 357-517, gnl|loxAfr1|scaffold_86210 (8078-8248) | |
| 357-517, gnl|mm7|chr11 (120704955-120705121) | |
| 357-517, gnl|mm7|chr11 (120704955-120705121) | |
| 357-517, gnl|Mm7|chr11 (120705127-120704963) | |
| 357-517, gnl|monDom2|scaffold_18 (14837819-14837984) | |
| 357-517, gnl|monDom2|scaffold_18 (14837819-14837984) | |
| 357-517, gnl|panTro1|chr19 (81202580-81202750) | |
| 357-517, gnl|panTro1|chr19 (81202580-81202750) | |
| 357-517, gnl|rheMac2|chr16 (77318290-77318460) | |
| 357-517, gnl|rheMac2|chr16 (77318290-77318460) | |
| 357-517, gnl|rn3|chr10 (110000494-110000664) | |
| 357-517, gnl|rn3|chr10 (110000494-110000664) | |
| 357-517, gnl|tetNig1|chrUn_random (39542164-39542335) | |
| 357-517, gnl|tetNig1|chrUn_random (39542164-39542335) | |
| 357-517, gnl|xenTro1|scaffold_973 (152662-152493) | |
| 357-517, gnl|xenTro1|scaffold_973 (152662-152493) | |
| 578-756, gnl|bosTau2|chr19 (45409844-45409666) | |
| 578-756, gnl|Hg17|chr17 (77439592-77439414) | |
| 578-756, gnl|Mm7|chr11 (120704201-120704026) | |
| 757-1067, gnl|bosTau2|chr19 (45409571-45409264) | |
| 757-1067, gnl|Hg17|chr17 (77439318-77439013) | |
| 757-1067, gnl|Mm7|chr11 (120703913-120703554) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-235, gnl|bosTau2|chr19 (45413036-45412799) | |
| 1-235, gnl|Hg17|chr17 (77442732-77442495) | |
| 1-235, gnl|Mm7|chr11 (120707384-120707150) | |
| 357-517, gnl|bosTau2|chr19 (45410716-45410556) | |
| 357-517, gnl|canFam2|chr9 (3401563-3401393) | |
| 357-517, gnl|canFam2|chr9 (3401563-3401393) | |
| 357-517, gnl|danRer3|chr17 (10943988-10943827) | |
| 357-517, gnl|danRer3|chr17 (10943988-10943827) | |
| 357-517, gnl|echTel1|scaffold_196496 (6514-6684) | |
| 357-517, gnl|echTel1|scaffold_196496 (6514-6684) | |
| 357-517, gnl|fr1|chrUn (128698389-128698235) | |
| 357-517, gnl|fr1|chrUn (128698389-128698235) | |
| 357-517, gnl|galGal2|chr3_random (656505-656677) | |
| 357-517, gnl|galGal2|chr3_random (656510-656677) | |
| 357-517, gnl|hg17|chr17 (77440344-77440514) | |
| 357-517, gnl|Hg17|chr17 (77440512-77440352) | |
| 357-517, gnl|hg17|chr17_random (1946295-1946465) | |
| 357-517, gnl|loxAfr1|scaffold_86210 (8078-8248) | |
| 357-517, gnl|loxAfr1|scaffold_86210 (8078-8248) | |
| 357-517, gnl|mm7|chr11 (120704955-120705121) | |
| 357-517, gnl|mm7|chr11 (120704955-120705121) | |
| 357-517, gnl|Mm7|chr11 (120705127-120704963) | |
| 357-517, gnl|monDom2|scaffold_18 (14837819-14837984) | |
| 357-517, gnl|monDom2|scaffold_18 (14837819-14837984) | |
| 357-517, gnl|panTro1|chr19 (81202580-81202750) | |
| 357-517, gnl|panTro1|chr19 (81202580-81202750) | |
| 357-517, gnl|rheMac2|chr16 (77318290-77318460) | |
| 357-517, gnl|rheMac2|chr16 (77318290-77318460) | |
| 357-517, gnl|rn3|chr10 (110000494-110000664) | |
| 357-517, gnl|rn3|chr10 (110000494-110000664) | |
| 357-517, gnl|tetNig1|chrUn_random (39542164-39542335) | |
| 357-517, gnl|tetNig1|chrUn_random (39542164-39542335) | |
| 357-517, gnl|xenTro1|scaffold_973 (152662-152493) | |
| 357-517, gnl|xenTro1|scaffold_973 (152662-152493) | |
| 578-756, gnl|bosTau2|chr19 (45409844-45409666) | |
| 578-756, gnl|Hg17|chr17 (77439592-77439414) | |
| 578-756, gnl|Mm7|chr11 (120704201-120704026) | |
| 757-1067, gnl|bosTau2|chr19 (45409571-45409264) | |
| 757-1067, gnl|Hg17|chr17 (77439318-77439013) | |
| 757-1067, gnl|Mm7|chr11 (120703913-120703554) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| fty (0.703359) | |
| ece (0.687916) | |
| cje (0.660939) | |
| csk (0.422238) | |
| col (0.390016) | |
| csp (0.322373) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cst (0.280073) | |
| che (0.272628) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.703359) | |
| ece (0.687916) | |
| cje (0.660939) | |
| csk (0.422238) | |
| col (0.390016) | |
| csp (0.322373) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cst (0.280073) | |
| che (0.272628) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |