Non-Coding RNA Search

Ss1.1-Pig4-TMW8060G03.5

Sequence:


               
               TGGTGCCCTGGCACCACCTGGCCCCTGACTCGGCACTTGCCGACGCCTTTTACGAGCGGG
GCTATGGCTGGGCTGGCTACATCGTGGCGATTGGTTCCATCTGCTCCATGAACACGGTCC
TGCTTGGTATCCTCTTTTCCCTGCCACGCATCATCTACGCCATGGCTACAGATGGGCTCT
TCTTCCAGGCGTTTGCCTACGTGCACCCCAGGACACAGGTGCCTGTAGTGGGCATCATGG
TGTTCGGGGCCCTCACAGCTTTTGTGGCACTGCTGCTGGACCTCGAAGCACTGGTCCAGT
TCCTGTCCATTGGCACCCTGCTGGCCTACACTTTCGTGGCCATCAGCGTCATCGTGCTCC
GCTTCCAGAAGGCCCCTGCATCCAGTTCCACCAGCCCAGAAAGCTCTGTCCCTGCGGCCA
AGGAGTACAACTCCTTCTCAGACCACATAGAGCTGGTGGGCACTGAGCAGGGCCCAGCCT
CTGAGCCTGGGCAGCTGCGGCCAGCCCTGAGGCCCTACCTGGGCTGCCTGGATAGGTGCT
GCCCTGGGACAGCCGTGGCTTGGGCAATCGGGGTCCTGGTGGTCTCGGGCGCCATCCTGG
CCTGCACACTGACCATCGGGAACTCAGTCCTGAAGCTCCCTCACTGGGGCTCTGTCCTGC
TGCTCCTGCTCAGCGGCGGCATGTTTTCTGCTCAGTCTTATTGTCCTGGGGGCCTACCAG
CAGCAACGCCAGCAGGACATCTTCCAGATACCCATGGTGCCACTGATTCCAGCAGTGAGC
ATCTTCCTCAACATCTGCCTCATGCTGAAGCTGAGCATCCTGACCTGGTTGCGCTTCTTC
ATCTGGCTGGTGATCGGACTCACAGTGTATTTCGGGTACGGCATGCGGCACAGCAAGGAG
AACCAGCGGGAGCTGCCAGGGCTGACCATCACACGCTATGTGGTCTTCCCCAGCGGCAGC
TCACTGGAGGAGACAGTGCAGGCTGTGCAGCCCCCCAGCCAGGCACCAGCCCAGGAGTCT
GGCCACTTGGAGCAGCCCTCCAGTCCATGAGGACTGCTGGGGGCCTGCCCTCCACCTTGG
GAGGCCCGCCTTCTATCCAGGCCAGCTCTGGTTCAGGTCTGCTCACACCAGGGGGTCCTT
GGGGCTGCAGTGGGCGTGACCAGCACTGGTGTGGTAGACTCTTTGCCCGGTGCCTTCCAG
TTCATGACCCACTCCAGCAGCCTGGGCAGGTGGGGTGGAGTTGGGGGGTAGATGAGGCTC
CAGCCCCAGGAATATACAATAATAACTGCCCAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGCCCTGGCACCACCTGGCCCCTGACTCGGCACTTGCCGACGCCTTTTACGAGCGGG
GCTATGGCTGGGCTGGCTACATCGTGGCGATTGGTTCCATCTGCTCCATGAACACGGTCC
TGCTTGGTATCCTCTTTTCCCTGCCACGCATCATCTACGCCATGGCTACAGATGGGCTCT
TCTTCCAGGCGTTTGCCTACGTGCACCCCAGGACACAGGTGCCTGTAGTGGGCATCATGG
TGTTCGGGGCCCTCACAGCTTTTGTGGCACTGCTGCTGGACCTCGAAGCACTGGTCCAGT
TCCTGTCCATTGGCACCCTGCTGGCCTACACTTTCGTGGCCATCAGCGTCATCGTGCTCC
GCTTCCAGAAGGCCCCTGCATCCAGTTCCACCAGCCCAGAAAGCTCTGTCCCTGCGGCCA
AGGAGTACAACTCCTTCTCAGACCACATAGAGCTGGTGGGCACTGAGCAGGGCCCAGCCT
CTGAGCCTGGGCAGCTGCGGCCAGCCCTGAGGCCCTACCTGGGCTGCCTGGATAGGTGCT
GCCCTGGGACAGCCGTGGCTTGGGCAATCGGGGTCCTGGTGGTCTCGGGCGCCATCCTGG
CCTGCACACTGACCATCGGGAACTCAGTCCTGAAGCTCCCTCACTGGGGCTCTGTCCTGC
TGCTCCTGCTCAGCGGCGGCATGTTTTCTGCTCAGTCTTATTGTCCTGGGGGCCTACCAG
CAGCAACGCCAGCAGGACATCTTCCAGATACCCATGGTGCCACTGATTCCAGCAGTGAGC
ATCTTCCTCAACATCTGCCTCATGCTGAAGCTGAGCATCCTGACCTGGTTGCGCTTCTTC
ATCTGGCTGGTGATCGGACTCACAGTGTATTTCGGGTACGGCATGCGGCACAGCAAGGAG
AACCAGCGGGAGCTGCCAGGGCTGACCATCACACGCTATGTGGTCTTCCCCAGCGGCAGC
TCACTGGAGGAGACAGTGCAGGCTGTGCAGCCCCCCAGCCAGGCACCAGCCCAGGAGTCT
GGCCACTTGGAGCAGCCCTCCAGTCCATGAGGACTGCTGGGGGCCTGCCCTCCACCTTGG
GAGGCCCGCCTTCTATCCAGGCCAGCTCTGGTTCAGGTCTGCTCACACCAGGGGGTCCTT
GGGGCTGCAGTGGGCGTGACCAGCACTGGTGTGGTAGACTCTTTGCCCGGTGCCTTCCAG
TTCATGACCCACTCCAGCAGCCTGGGCAGGTGGGGTGGAGTTGGGGGGTAGATGAGGCTC
CAGCCCCAGGAATATACAATAATAACTGCCCAGCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26335901|dbj|BAC31651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26335901|dbj|BAC31651.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               146-265, - strand, RNAz p=0.61454
               

               
               386-745, - strand, RNAz p=0.983288

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-265, - strand, RNAz p=0.61454
               

               
               386-745, - strand, RNAz p=0.983288

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               106-780, gnl|bosTau2|chr17 (45736013-45735344)
               

               
               106-780, gnl|Hg17|chr22 (19709194-19708519)
               

               
               106-780, gnl|Mm7|chr16 (17124319-17123646)
               


               
               856-1061, gnl|bosTau2|chr17 (45734960-45734764)
               

               
               856-1061, gnl|Hg17|chr22 (19708074-19707806)
               

               
               856-1061, gnl|Mm7|chr16 (17123186-17122955)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-780, gnl|bosTau2|chr17 (45736013-45735344)
               

               
               106-780, gnl|Hg17|chr22 (19709194-19708519)
               

               
               106-780, gnl|Mm7|chr16 (17124319-17123646)
               


               
               856-1061, gnl|bosTau2|chr17 (45734960-45734764)
               

               
               856-1061, gnl|Hg17|chr22 (19708074-19707806)
               

               
               856-1061, gnl|Mm7|chr16 (17123186-17122955)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.401016)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               ute (0.132784)

	146-265, - strand, RNAz p=0.61454
	386-745, - strand, RNAz p=0.983288

	106-780, gnl\|bosTau2\|chr17 (45736013-45735344)
	106-780, gnl\|Hg17\|chr22 (19709194-19708519)
	106-780, gnl\|Mm7\|chr16 (17124319-17123646)

	856-1061, gnl\|bosTau2\|chr17 (45734960-45734764)
	856-1061, gnl\|Hg17\|chr22 (19708074-19707806)
	856-1061, gnl\|Mm7\|chr16 (17123186-17122955)