Ss1.1-Pig4-TMW8060G04.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGCTCTGGGTTCCCTCTGCTCCGGTAGCTCTGGCGGAGTCTGCGCGATGGGAGACGCGGA AAGGCCGGAAGCGGCAGGGTCTGAACAGGAGGAGAGATTATCTTCAGATACCAGTGAAAA CGAAGCAAAGTCAAGTGAAGAGCCACTCTTAAGAAAGAGTTCTCGCCGATTTGTCATCTT TCCGATACAGTACCCCGACATTTGGAAAATGTATAAACAGGCACAGGCATCCTTCTGGAC AGCGGAAGAGGTTGACTTATCAAAGGATCTCCCTCACTGGAACAGGCTTAAATCAGATGA GAAGTATTTTATCTCTCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTGAATGA AAACTTGGTGGAGCGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCACGCTGTTTCTACGG CTTTCAAATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTA CATCAGAGATCCCAAGCAAAGGGAATTTTTATTTAATGCAATTGAGACAATGCCATATGT TAAGAAAAAAGCAGATTGGGCCTTGAGATGGATAGCAGATAGAAAAGCTACTTTTGGGGA AAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTAT ATTCTGGTTAAAGAAAAGAGGTCTTATGCCTGGACTCACGTTTTCCAATGAACTCATCAG CAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTCATGTTTCAGTACCTGGTAAATAA GCCTTCAGAAGCAAGAGTTAGGGAGATCATTGTTAATGCTGTTGAAATTGAGCAGGAGTT TTTAACAGAAGCCTTGCCAGTTGGCCTCATTGGAATGAATTGTGTTTTGATGAAACAGTA TATTGAGTTTGTAGCTGACAGATTGCTTACAGAACTTGGATTCTCAAAGGTTTTTCAGGC AGAAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGA GAAACGAGTTTCAGAGTATCAGCGTTTTGCAGTGATGGCAGAAACTACAGATAATGTCTT CACCTTAGATGCAGATTTTTAAAATCCTCCTCATATCTAAAGTTATCATTGGTAAAGAGC AATCTATTTTTCTCTGCTTAAAAAACAAAACCAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGCTCTGGGTTCCCTCTGCTCCGGTAGCTCTGGCGGAGTCTGCGCGATGGGAGACGCGGA AAGGCCGGAAGCGGCAGGGTCTGAACAGGAGGAGAGATTATCTTCAGATACCAGTGAAAA CGAAGCAAAGTCAAGTGAAGAGCCACTCTTAAGAAAGAGTTCTCGCCGATTTGTCATCTT TCCGATACAGTACCCCGACATTTGGAAAATGTATAAACAGGCACAGGCATCCTTCTGGAC AGCGGAAGAGGTTGACTTATCAAAGGATCTCCCTCACTGGAACAGGCTTAAATCAGATGA GAAGTATTTTATCTCTCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTGAATGA AAACTTGGTGGAGCGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCACGCTGTTTCTACGG CTTTCAAATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTA CATCAGAGATCCCAAGCAAAGGGAATTTTTATTTAATGCAATTGAGACAATGCCATATGT TAAGAAAAAAGCAGATTGGGCCTTGAGATGGATAGCAGATAGAAAAGCTACTTTTGGGGA AAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTAT ATTCTGGTTAAAGAAAAGAGGTCTTATGCCTGGACTCACGTTTTCCAATGAACTCATCAG CAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTCATGTTTCAGTACCTGGTAAATAA GCCTTCAGAAGCAAGAGTTAGGGAGATCATTGTTAATGCTGTTGAAATTGAGCAGGAGTT TTTAACAGAAGCCTTGCCAGTTGGCCTCATTGGAATGAATTGTGTTTTGATGAAACAGTA TATTGAGTTTGTAGCTGACAGATTGCTTACAGAACTTGGATTCTCAAAGGTTTTTCAGGC AGAAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGA GAAACGAGTTTCAGAGTATCAGCGTTTTGCAGTGATGGCAGAAACTACAGATAATGTCTT CACCTTAGATGCAGATTTTTAAAATCCTCCTCATATCTAAAGTTATCATTGGTAAAGAGC AATCTATTTTTCTCTGCTTAAAAAACAAAACCAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
391-510, + strand, RNAz p=0.786071 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
391-510, + strand, RNAz p=0.786071 |
Aligned organism(s): 118 entry(ies) | More info |
Aligned organism(s): 118 entry(ies) | Help | Less info |
93-252, gnl|bosTau2|chr14 (14090735-14090894) | |
93-252, gnl|Hg17|chr8 (103313710-103313551) | |
93-252, gnl|Mm7|chr15 (38064443-38064284) | |
351-510, gnl|bosTau2|chr11 (66345142-66345302) | |
351-510, gnl|canFam2|chr17 (10081538-10081407) | |
351-510, gnl|canFam2|chrX (97518950-97519038) | |
351-510, gnl|danRer3|chr20 (36884989-36884858) | |
351-510, gnl|dasNov1|scaffold_28173 (16639-16766) | |
351-510, gnl|dasNov1|scaffold_53253 (7270-7179) | |
351-510, gnl|echTel1|scaffold_12132 (1414-1283) | |
351-510, gnl|echTel1|scaffold_12132 (1287-1376) | |
351-510, gnl|fr1|chrUn (291493436-291493567) | |
351-510, gnl|hg17|chr1 (158161702-158161833) | |
351-510, gnl|hg17|chr15 (78063945-78064044) | |
351-510, gnl|Hg17|chr2 (10215422-10215585) | |
351-510, gnl|loxAfr1|scaffold_38659 (15949-16080) | |
351-510, gnl|loxAfr1|scaffold_38659 (16076-15979) | |
351-510, gnl|Mm7|chr12 (22546833-22546999) | |
351-510, gnl|mm7|chr4 (72856565-72856475) | |
351-510, gnl|mm7|chr7 (100749277-100749408) | |
351-510, gnl|monDom2|scaffold_0 (49967409-49967541) | |
351-510, gnl|monDom2|scaffold_49 (12583983-12584082) | |
351-510, gnl|oryCun1|scaffold_129722 (9411-9542) | |
351-510, gnl|oryCun1|scaffold_129722 (9540-9445) | |
351-510, gnl|panTro1|chr1 (140229507-140229639) | |
351-510, gnl|panTro1|chr16 (78767125-78767224) | |
351-510, gnl|rheMac2|chr7 (59097680-59097778) | |
351-510, gnl|rheMac2|chrX (42051967-42052093) | |
351-510, gnl|rn3|chr19 (25569481-25569612) | |
351-510, gnl|rn3|chr19 (25569610-25569519) | |
351-510, gnl|tetNig1|chrUn_random (67797534-67797665) | |
351-510, gnl|tetNig1|chrUn_random (50415791-50415919) | |
351-510, gnl|xenTro1|scaffold_636 (507801-507932) | |
590-731, gnl|bosTau2|chr11 (66346883-66347024) | |
590-731, gnl|canFam2|chr13 (6837550-6837708) | |
590-731, gnl|canFam2|chr17 (10083629-10083724) | |
590-731, gnl|canFam2|chr17 (10083751-10083619) | |
590-731, gnl|danRer3|chr20 (36885563-36885423) | |
590-731, gnl|danRer3|chr20 (36885635-36885421) | |
590-731, gnl|dasNov1|scaffold_53253 (7034-6939) | |
590-731, gnl|dasNov1|scaffold_53253 (6912-7044) | |
590-731, gnl|dasNov1|scaffold_99901 (1422-1580) | |
590-731, gnl|echTel1|scaffold_12132 (1520-1619) | |
590-731, gnl|echTel1|scaffold_145039 (1014-890) | |
590-731, gnl|echTel1|scaffold_302576 (16087-15924) | |
590-731, gnl|fr1|chrUn (118514212-118514056) | |
590-731, gnl|fr1|chrUn (291492963-291493249) | |
590-731, gnl|galGal2|chr2 (127639958-127639802) | |
590-731, gnl|galGal2|chr3 (94780305-94780175) | |
590-731, gnl|hg17|chr15 (78064457-78064549) | |
590-731, gnl|Hg17|chr2 (10217800-10217946) | |
590-731, gnl|hg17|chr8 (103300208-103300366) | |
590-731, gnl|hg17|chrX (43925181-43925313) | |
590-731, gnl|loxAfr1|scaffold_38659 (13034-13191) | |
590-731, gnl|loxAfr1|scaffold_38659 (13160-13065) | |
590-731, gnl|loxAfr1|scaffold_38659 (13038-13167) | |
590-731, gnl|Mm7|chr12 (22548158-22548302) | |
590-731, gnl|mm7|chr15 (38047893-38048048) | |
590-731, gnl|mm7|chr4 (72856337-72856241) | |
590-731, gnl|mm7|chr7 (100749060-100749180) | |
590-731, gnl|monDom2|scaffold_3 (60974233-60974078) | |
590-731, gnl|monDom2|scaffold_49 (12584215-12584299) | |
590-731, gnl|monDom2|scaffold_49 (12584337-12584205) | |
590-731, gnl|oryCun1|scaffold_129722 (6345-6250) | |
590-731, gnl|oryCun1|scaffold_129722 (6223-6355) | |
590-731, gnl|oryCun1|scaffold_199714 (73126-72968) | |
590-731, gnl|panTro1|chr16 (78767636-78767728) | |
590-731, gnl|panTro1|chr7 (105668740-105668898) | |
590-731, gnl|panTro1|chrX (45374836-45374968) | |
590-731, gnl|rheMac2|chr7 (59098185-59098277) | |
590-731, gnl|rheMac2|chr8 (104724234-104724392) | |
590-731, gnl|rheMac2|chrX (42051741-42051870) | |
590-731, gnl|rn3|chr19 (25569374-25569279) | |
590-731, gnl|rn3|chr19 (25569252-25569384) | |
590-731, gnl|rn3|chr7 (73462041-73462196) | |
590-731, gnl|tetNig1|chr21 (1596648-1596503) | |
590-731, gnl|tetNig1|chrUn_random (50416262-50416357) | |
590-731, gnl|tetNig1|chrUn_random (50416461-50416170) | |
590-731, gnl|xenTro1|scaffold_3 (5692830-5692678) | |
590-731, gnl|xenTro1|scaffold_636 (518300-518432) | |
919-1175, gnl|bosTau2|chr14 (14110318-14110576) | |
919-1175, gnl|Hg17|chr8 (103289722-103289463) | |
919-1175, gnl|Mm7|chr15 (38038117-38037710) | |
952-1102, gnl|bosTau2|chr11 (66348714-66348865) | |
952-1102, gnl|canFam2|chr17 (10085016-10085190) | |
952-1102, gnl|canFam2|chr17 (10085193-10085024) | |
952-1102, gnl|danRer3|chr20 (36887102-36887278) | |
952-1102, gnl|danRer3|chr20 (36887278-36887110) | |
952-1102, gnl|dasNov1|scaffold_53253 (6520-6690) | |
952-1102, gnl|dasNov1|scaffold_93061 (2095-1917) | |
952-1102, gnl|echTel1|scaffold_145039 (1373-1231) | |
952-1102, gnl|echTel1|scaffold_230416 (750-601) | |
952-1102, gnl|fr1|chrUn (291492193-291492033) | |
952-1102, gnl|fr1|chrUn (291492033-291492185) | |
952-1102, gnl|galGal2|chr3 (94781455-94781623) | |
952-1102, gnl|galGal2|chr3 (94781634-94781463) | |
952-1102, gnl|hg17|chr2 (10219955-10220133) | |
952-1102, gnl|Hg17|chr2 (10219960-10220111) | |
952-1102, gnl|hg17|chrX (43924794-43924959) | |
952-1102, gnl|loxAfr1|scaffold_38659 (11579-11401) | |
952-1102, gnl|loxAfr1|scaffold_38659 (11401-11571) | |
952-1102, gnl|mm7|chr12 (22549575-22549752) | |
952-1102, gnl|Mm7|chr12 (22549580-22549731) | |
952-1102, gnl|mm7|chr7 (100748668-100748837) | |
952-1102, gnl|monDom2|scaffold_1 (128313809-128313987) | |
952-1102, gnl|monDom2|scaffold_49 (12584726-12584559) | |
952-1102, gnl|oryCun1|scaffold_129722 (5305-5125) | |
952-1102, gnl|oryCun1|scaffold_129722 (5125-5297) | |
952-1102, gnl|panTro1|chr12 (10943003-10943181) | |
952-1102, gnl|panTro1|chrX (45374449-45374614) | |
952-1102, gnl|rheMac2|chr13 (10216754-10216932) | |
952-1102, gnl|rheMac2|chrX (42051356-42051521) | |
952-1102, gnl|rn3|chr19 (25568860-25569030) | |
952-1102, gnl|rn3|chr6 (42358399-42358577) | |
952-1102, gnl|tetNig1|chrUn_random (50416979-50417136) | |
952-1102, gnl|tetNig1|chrUn_random (50417136-50416987) | |
952-1102, gnl|xenTro1|scaffold_636 (505955-505795) | |
952-1102, gnl|xenTro1|scaffold_636 (517034-517190) |
Aligned organism(s): 118 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
93-252, gnl|bosTau2|chr14 (14090735-14090894) | |
93-252, gnl|Hg17|chr8 (103313710-103313551) | |
93-252, gnl|Mm7|chr15 (38064443-38064284) | |
351-510, gnl|bosTau2|chr11 (66345142-66345302) | |
351-510, gnl|canFam2|chr17 (10081538-10081407) | |
351-510, gnl|canFam2|chrX (97518950-97519038) | |
351-510, gnl|danRer3|chr20 (36884989-36884858) | |
351-510, gnl|dasNov1|scaffold_28173 (16639-16766) | |
351-510, gnl|dasNov1|scaffold_53253 (7270-7179) | |
351-510, gnl|echTel1|scaffold_12132 (1414-1283) | |
351-510, gnl|echTel1|scaffold_12132 (1287-1376) | |
351-510, gnl|fr1|chrUn (291493436-291493567) | |
351-510, gnl|hg17|chr1 (158161702-158161833) | |
351-510, gnl|hg17|chr15 (78063945-78064044) | |
351-510, gnl|Hg17|chr2 (10215422-10215585) | |
351-510, gnl|loxAfr1|scaffold_38659 (15949-16080) | |
351-510, gnl|loxAfr1|scaffold_38659 (16076-15979) | |
351-510, gnl|Mm7|chr12 (22546833-22546999) | |
351-510, gnl|mm7|chr4 (72856565-72856475) | |
351-510, gnl|mm7|chr7 (100749277-100749408) | |
351-510, gnl|monDom2|scaffold_0 (49967409-49967541) | |
351-510, gnl|monDom2|scaffold_49 (12583983-12584082) | |
351-510, gnl|oryCun1|scaffold_129722 (9411-9542) | |
351-510, gnl|oryCun1|scaffold_129722 (9540-9445) | |
351-510, gnl|panTro1|chr1 (140229507-140229639) | |
351-510, gnl|panTro1|chr16 (78767125-78767224) | |
351-510, gnl|rheMac2|chr7 (59097680-59097778) | |
351-510, gnl|rheMac2|chrX (42051967-42052093) | |
351-510, gnl|rn3|chr19 (25569481-25569612) | |
351-510, gnl|rn3|chr19 (25569610-25569519) | |
351-510, gnl|tetNig1|chrUn_random (67797534-67797665) | |
351-510, gnl|tetNig1|chrUn_random (50415791-50415919) | |
351-510, gnl|xenTro1|scaffold_636 (507801-507932) | |
590-731, gnl|bosTau2|chr11 (66346883-66347024) | |
590-731, gnl|canFam2|chr13 (6837550-6837708) | |
590-731, gnl|canFam2|chr17 (10083629-10083724) | |
590-731, gnl|canFam2|chr17 (10083751-10083619) | |
590-731, gnl|danRer3|chr20 (36885563-36885423) | |
590-731, gnl|danRer3|chr20 (36885635-36885421) | |
590-731, gnl|dasNov1|scaffold_53253 (7034-6939) | |
590-731, gnl|dasNov1|scaffold_53253 (6912-7044) | |
590-731, gnl|dasNov1|scaffold_99901 (1422-1580) | |
590-731, gnl|echTel1|scaffold_12132 (1520-1619) | |
590-731, gnl|echTel1|scaffold_145039 (1014-890) | |
590-731, gnl|echTel1|scaffold_302576 (16087-15924) | |
590-731, gnl|fr1|chrUn (118514212-118514056) | |
590-731, gnl|fr1|chrUn (291492963-291493249) | |
590-731, gnl|galGal2|chr2 (127639958-127639802) | |
590-731, gnl|galGal2|chr3 (94780305-94780175) | |
590-731, gnl|hg17|chr15 (78064457-78064549) | |
590-731, gnl|Hg17|chr2 (10217800-10217946) | |
590-731, gnl|hg17|chr8 (103300208-103300366) | |
590-731, gnl|hg17|chrX (43925181-43925313) | |
590-731, gnl|loxAfr1|scaffold_38659 (13034-13191) | |
590-731, gnl|loxAfr1|scaffold_38659 (13160-13065) | |
590-731, gnl|loxAfr1|scaffold_38659 (13038-13167) | |
590-731, gnl|Mm7|chr12 (22548158-22548302) | |
590-731, gnl|mm7|chr15 (38047893-38048048) | |
590-731, gnl|mm7|chr4 (72856337-72856241) | |
590-731, gnl|mm7|chr7 (100749060-100749180) | |
590-731, gnl|monDom2|scaffold_3 (60974233-60974078) | |
590-731, gnl|monDom2|scaffold_49 (12584215-12584299) | |
590-731, gnl|monDom2|scaffold_49 (12584337-12584205) | |
590-731, gnl|oryCun1|scaffold_129722 (6345-6250) | |
590-731, gnl|oryCun1|scaffold_129722 (6223-6355) | |
590-731, gnl|oryCun1|scaffold_199714 (73126-72968) | |
590-731, gnl|panTro1|chr16 (78767636-78767728) | |
590-731, gnl|panTro1|chr7 (105668740-105668898) | |
590-731, gnl|panTro1|chrX (45374836-45374968) | |
590-731, gnl|rheMac2|chr7 (59098185-59098277) | |
590-731, gnl|rheMac2|chr8 (104724234-104724392) | |
590-731, gnl|rheMac2|chrX (42051741-42051870) | |
590-731, gnl|rn3|chr19 (25569374-25569279) | |
590-731, gnl|rn3|chr19 (25569252-25569384) | |
590-731, gnl|rn3|chr7 (73462041-73462196) | |
590-731, gnl|tetNig1|chr21 (1596648-1596503) | |
590-731, gnl|tetNig1|chrUn_random (50416262-50416357) | |
590-731, gnl|tetNig1|chrUn_random (50416461-50416170) | |
590-731, gnl|xenTro1|scaffold_3 (5692830-5692678) | |
590-731, gnl|xenTro1|scaffold_636 (518300-518432) | |
919-1175, gnl|bosTau2|chr14 (14110318-14110576) | |
919-1175, gnl|Hg17|chr8 (103289722-103289463) | |
919-1175, gnl|Mm7|chr15 (38038117-38037710) | |
952-1102, gnl|bosTau2|chr11 (66348714-66348865) | |
952-1102, gnl|canFam2|chr17 (10085016-10085190) | |
952-1102, gnl|canFam2|chr17 (10085193-10085024) | |
952-1102, gnl|danRer3|chr20 (36887102-36887278) | |
952-1102, gnl|danRer3|chr20 (36887278-36887110) | |
952-1102, gnl|dasNov1|scaffold_53253 (6520-6690) | |
952-1102, gnl|dasNov1|scaffold_93061 (2095-1917) | |
952-1102, gnl|echTel1|scaffold_145039 (1373-1231) | |
952-1102, gnl|echTel1|scaffold_230416 (750-601) | |
952-1102, gnl|fr1|chrUn (291492193-291492033) | |
952-1102, gnl|fr1|chrUn (291492033-291492185) | |
952-1102, gnl|galGal2|chr3 (94781455-94781623) | |
952-1102, gnl|galGal2|chr3 (94781634-94781463) | |
952-1102, gnl|hg17|chr2 (10219955-10220133) | |
952-1102, gnl|Hg17|chr2 (10219960-10220111) | |
952-1102, gnl|hg17|chrX (43924794-43924959) | |
952-1102, gnl|loxAfr1|scaffold_38659 (11579-11401) | |
952-1102, gnl|loxAfr1|scaffold_38659 (11401-11571) | |
952-1102, gnl|mm7|chr12 (22549575-22549752) | |
952-1102, gnl|Mm7|chr12 (22549580-22549731) | |
952-1102, gnl|mm7|chr7 (100748668-100748837) | |
952-1102, gnl|monDom2|scaffold_1 (128313809-128313987) | |
952-1102, gnl|monDom2|scaffold_49 (12584726-12584559) | |
952-1102, gnl|oryCun1|scaffold_129722 (5305-5125) | |
952-1102, gnl|oryCun1|scaffold_129722 (5125-5297) | |
952-1102, gnl|panTro1|chr12 (10943003-10943181) | |
952-1102, gnl|panTro1|chrX (45374449-45374614) | |
952-1102, gnl|rheMac2|chr13 (10216754-10216932) | |
952-1102, gnl|rheMac2|chrX (42051356-42051521) | |
952-1102, gnl|rn3|chr19 (25568860-25569030) | |
952-1102, gnl|rn3|chr6 (42358399-42358577) | |
952-1102, gnl|tetNig1|chrUn_random (50416979-50417136) | |
952-1102, gnl|tetNig1|chrUn_random (50417136-50416987) | |
952-1102, gnl|xenTro1|scaffold_636 (505955-505795) | |
952-1102, gnl|xenTro1|scaffold_636 (517034-517190) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
sme (0.305437) | |
pgl (0.236967) | |
mga (0.160205) |