Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H02.3

Sequence:


               
               ATGATTACATATCCTTTAGGCACACCTCTCTGTTTTTCCTGGAGTCAATTGCCTTGTTTT
TCACTTGTTCGGTTTTCTGTGTTCCCTGCCCTGCTTAACCCAGACCTCTCCTCACCAAGT
GTCAAGCTCCACTCAGTATTGTCATGTGCGTCAGGGGATGTGCTGGGTTCATTTTCTTTT
GTTCATGACCCTCTGGGAAACCATCTTTGTGATACAGCTTGGATATTTCGTGGATTCCGA
GTTACATTATTTTTTTCTGCCTTGGTTTGCTTTCTCATTTTGATGGAGCTCATCTTTCAG
CAGCCTTCTGAGCTTGCTTATCTAACATGTCTTTATTTCTACCCTTATATTAGATGCCTC
ATTTGAATGGAAATAGAATTTTAAATTGGAACTCTTTCCCCTGTATTTTTGTTCGTTTTC
TGTTGCTGGAAGTTTTTAAGATCATCCCTATCCCTGGTCGTCTCAAATTTCTCAACAACC
TGCCTGATGTATTGGTCCCCTCCCCTAGTCCCTATTTATTGTGCTGGGCAGACAGTAGCG
CTTTTTTCCTGTAGTTATTGCTGTGTAACCAACCAACCAACCAACCAACCAAAAAACCAA
CTATAGCTTAAATTTGGGAAGGGTAGGCTGGGCAGCTTTCTCTTGGGCATTCTCATGCAG
CTTCAGACAGGTATTAGCTGGGACTGTGGTTATCTAAAGTCTTGACTAGACGGGATGGAT
GTCCAAGATAGCTCACTTACAAAGTTGGCTGGTGATGTAGCTAAAGGCTCAGCTGGGGCT
TTCAACCTGAGTATCTATGTGTGTCTTCACTACGTGTCTTGGCTTCCTTACAGCAAGGTG
GCCTCAGATAGGACTTCTCACGTGGCGTCTCAGGGCTTTAGGTGCAGGTACTCTAGTGAG
CAAAATGCAAGCCCAGCTTTGGAATCTGTGCAGGATTACTTCCACTGCACTGAATTGGTT
TCACGCATCTGGTTATAGATTCCAGGGATGGGACAGAGGTCCTGTTTCTCAATGGGGATG
AGTGCTAAGACCACATTGTAGAAGAGCCTGTGAAATGCGAGCTGTTGCAGGGGTCTTTGG
AAAATGTCTCCCGTGCTTTTTAATCTGGAAAATTTTCCACAATTCTGGGAATTTTTGGAA
ACTATTTAATACAATCTTCCCTCCACGATTTCCCTTTGGAACTCCTAATATTCAGATGTT
TGACCGCCTATATTGATGCTCCAATTTTCATTTCTCTTCAATTTTTATTATCTTTATCCT
TTTATGCTACTTTCCTAAAATTTCTGTTTTATCTCCATTATAGTGACTTTAATGTTATAG
TGACTTTAAAACTGCTCCCATATTATGATTCTCTATATTGTACACCTATAACTTACATAA
TATTGTACCCCAACTATAACTTCAATAAAAAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATTACATATCCTTTAGGCACACCTCTCTGTTTTTCCTGGAGTCAATTGCCTTGTTTT
TCACTTGTTCGGTTTTCTGTGTTCCCTGCCCTGCTTAACCCAGACCTCTCCTCACCAAGT
GTCAAGCTCCACTCAGTATTGTCATGTGCGTCAGGGGATGTGCTGGGTTCATTTTCTTTT
GTTCATGACCCTCTGGGAAACCATCTTTGTGATACAGCTTGGATATTTCGTGGATTCCGA
GTTACATTATTTTTTTCTGCCTTGGTTTGCTTTCTCATTTTGATGGAGCTCATCTTTCAG
CAGCCTTCTGAGCTTGCTTATCTAACATGTCTTTATTTCTACCCTTATATTAGATGCCTC
ATTTGAATGGAAATAGAATTTTAAATTGGAACTCTTTCCCCTGTATTTTTGTTCGTTTTC
TGTTGCTGGAAGTTTTTAAGATCATCCCTATCCCTGGTCGTCTCAAATTTCTCAACAACC
TGCCTGATGTATTGGTCCCCTCCCCTAGTCCCTATTTATTGTGCTGGGCAGACAGTAGCG
CTTTTTTCCTGTAGTTATTGCTGTGTAACCAACCAACCAACCAACCAACCAAAAAACCAA
CTATAGCTTAAATTTGGGAAGGGTAGGCTGGGCAGCTTTCTCTTGGGCATTCTCATGCAG
CTTCAGACAGGTATTAGCTGGGACTGTGGTTATCTAAAGTCTTGACTAGACGGGATGGAT
GTCCAAGATAGCTCACTTACAAAGTTGGCTGGTGATGTAGCTAAAGGCTCAGCTGGGGCT
TTCAACCTGAGTATCTATGTGTGTCTTCACTACGTGTCTTGGCTTCCTTACAGCAAGGTG
GCCTCAGATAGGACTTCTCACGTGGCGTCTCAGGGCTTTAGGTGCAGGTACTCTAGTGAG
CAAAATGCAAGCCCAGCTTTGGAATCTGTGCAGGATTACTTCCACTGCACTGAATTGGTT
TCACGCATCTGGTTATAGATTCCAGGGATGGGACAGAGGTCCTGTTTCTCAATGGGGATG
AGTGCTAAGACCACATTGTAGAAGAGCCTGTGAAATGCGAGCTGTTGCAGGGGTCTTTGG
AAAATGTCTCCCGTGCTTTTTAATCTGGAAAATTTTCCACAATTCTGGGAATTTTTGGAA
ACTATTTAATACAATCTTCCCTCCACGATTTCCCTTTGGAACTCCTAATATTCAGATGTT
TGACCGCCTATATTGATGCTCCAATTTTCATTTCTCTTCAATTTTTATTATCTTTATCCT
TTTATGCTACTTTCCTAAAATTTCTGTTTTATCTCCATTATAGTGACTTTAATGTTATAG
TGACTTTAAAACTGCTCCCATATTATGATTCTCTATATTGTACACCTATAACTTACATAA
TATTGTACCCCAACTATAACTTCAATAAAAAAGTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-450, gnl|bosTau2|chr1 (65750842-65751275)
               


               
               597-1406, gnl|bosTau2|chr1 (65752005-65752789)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-450, gnl|bosTau2|chr1 (65750842-65751275)
               


               
               597-1406, gnl|bosTau2|chr1 (65752005-65752789)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               ece (0.229305)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-450, gnl\|bosTau2\|chr1 (65750842-65751275)

	597-1406, gnl\|bosTau2\|chr1 (65752005-65752789)

	ece (0.229305)
	gul (0.177588)
	ton (0.1755)
	sin (0.174948)
	fhi (0.169578)
	lun (0.150489)
	spl (0.143184)
	lnt (0.142308)
	ssp (0.13552)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	med (0.116252)
	spc (0.113366)
	cty (0.10408)