Ss1.1-Pig4-TMW8060H04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTCCCGCGGTGCTCCGCGGGAGGGGCCAAGCTTGTGTTCCTCCTCCCTACCGGTCCTC ATCCTTAAAGCACGAGTCCGACGCCCCGCCTATTGGAGAGGGTGTCTCGATCTGGACAGC GAGCGGCCGGGGCGGGCCAGAACCCACCAAGGAGGGCCTGAGGCAACCGAGCCGCCGAGA CGGGCACGCGAGCGTCTTGGCCCCGACTGAGTAGTTGCGGGAGTTGCGAGGGGAGGGGTC GCGGGCGCCATTGCTGCTCGTCGGAGCGCCTCCGAGCCGCCGTCAACCCTTGGCTGCTCT CCCCGGTCTGGGAAGAGCAGTTGCCAGTCCCCGGCCGGGTCTCGTGAGTCGGGTGCCCCC GCCGCCGCCCACGCCGAGACCATGTTTGACAAGACGCGGCTGCCGTACGTGGCCCTCGAT GTGCTCTGCGTGTTGCTGGCTGGATTGCCTTTTGCAATTCTTACTTCAAGGCATACCCCC TTCCAACGAGGATTATTCTGTAATGATGAGTCCATCAAGTACCCTTACAAAGAAGACACC ATACCTTATCCATTATTAGGTGGAATAATCATTCCATTCAGTATTATCGTTATGATTGTT GGAGAAACCCTGTCTGTTTACTTTAACCTCTTGCACTCGAATTCCTTTATCAGGAATAAC TACATAGCCACTATTTACAAAGCCATTGGAACATTTTTATTTGGTGCAGCTGCTAGTCAG TCCCTGACTGACATTGCCAAGTATTCAATAGGCAGGCTGCGGCCTCACTTCTTGGATGTT TGTGACCCAGACTGGTCAAAAATCAACTGCAGTGATGGTTACATTGAAAACTACATATGT CGAGGGAATGCACAAAAAGTGAAGGAGGGCAGATTATCCTTCTACTCAGGCCACTCTTCA TTCTCCATGTACTGCATGCTGTTCGTGGCACTTTATCTTCAAGCCAGGATGAAGGGAGAC TGGGCAAGACTCTTACGCCCCACACTGCAATTTGGTCTTGTTGCTGTATCCATTTACGTG GGCCTTTCTCGAGTTTCTGATTACAAACACCACTGGAGTGATGTGTTGACTGGACTCATT CAAGGAGCTCTGGTTGCAATTGTAGTTGCTGTATATGTATCAGATTTCTTCAAGGAGAGA AATTCTCCTTTTAAAGAAAGGAAAGAAGAGGACTCTCATACAACTCTGCACGAAACACCA ACGACGGGGAATCACTATCGGAACAGTCACCAACCTTGAATGTGGTGGCAGAGTGCCCAG ATGAAGCTGGCCTGCTTTCTAAAGGAAAATGATTGCAACCAGTAAGCAAGAGGATGCGTC TTTCTTCCCGGTGTACAAGCCTTTAAGGGACTGCTGCTGCTATACCTCTTGAATGCCCAC TTTACCTGTGTGTATATAGTTACATTTAACACAATGGTTATCTAATAGCTCTAAGTTCAT TAAAAAAAATTTCAAGCCTTTCACTAAAACAATGCCCCACTTGTACATTTTTTATTAAAA AATGTAATGCTTATGTAAAAAAAAGTATGTAATATGCTTTCTTAGAATGATGCTTGATTT AAGCACAATACATATTAAAATGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTCCCGCGGTGCTCCGCGGGAGGGGCCAAGCTTGTGTTCCTCCTCCCTACCGGTCCTC ATCCTTAAAGCACGAGTCCGACGCCCCGCCTATTGGAGAGGGTGTCTCGATCTGGACAGC GAGCGGCCGGGGCGGGCCAGAACCCACCAAGGAGGGCCTGAGGCAACCGAGCCGCCGAGA CGGGCACGCGAGCGTCTTGGCCCCGACTGAGTAGTTGCGGGAGTTGCGAGGGGAGGGGTC GCGGGCGCCATTGCTGCTCGTCGGAGCGCCTCCGAGCCGCCGTCAACCCTTGGCTGCTCT CCCCGGTCTGGGAAGAGCAGTTGCCAGTCCCCGGCCGGGTCTCGTGAGTCGGGTGCCCCC GCCGCCGCCCACGCCGAGACCATGTTTGACAAGACGCGGCTGCCGTACGTGGCCCTCGAT GTGCTCTGCGTGTTGCTGGCTGGATTGCCTTTTGCAATTCTTACTTCAAGGCATACCCCC TTCCAACGAGGATTATTCTGTAATGATGAGTCCATCAAGTACCCTTACAAAGAAGACACC ATACCTTATCCATTATTAGGTGGAATAATCATTCCATTCAGTATTATCGTTATGATTGTT GGAGAAACCCTGTCTGTTTACTTTAACCTCTTGCACTCGAATTCCTTTATCAGGAATAAC TACATAGCCACTATTTACAAAGCCATTGGAACATTTTTATTTGGTGCAGCTGCTAGTCAG TCCCTGACTGACATTGCCAAGTATTCAATAGGCAGGCTGCGGCCTCACTTCTTGGATGTT TGTGACCCAGACTGGTCAAAAATCAACTGCAGTGATGGTTACATTGAAAACTACATATGT CGAGGGAATGCACAAAAAGTGAAGGAGGGCAGATTATCCTTCTACTCAGGCCACTCTTCA TTCTCCATGTACTGCATGCTGTTCGTGGCACTTTATCTTCAAGCCAGGATGAAGGGAGAC TGGGCAAGACTCTTACGCCCCACACTGCAATTTGGTCTTGTTGCTGTATCCATTTACGTG GGCCTTTCTCGAGTTTCTGATTACAAACACCACTGGAGTGATGTGTTGACTGGACTCATT CAAGGAGCTCTGGTTGCAATTGTAGTTGCTGTATATGTATCAGATTTCTTCAAGGAGAGA AATTCTCCTTTTAAAGAAAGGAAAGAAGAGGACTCTCATACAACTCTGCACGAAACACCA ACGACGGGGAATCACTATCGGAACAGTCACCAACCTTGAATGTGGTGGCAGAGTGCCCAG ATGAAGCTGGCCTGCTTTCTAAAGGAAAATGATTGCAACCAGTAAGCAAGAGGATGCGTC TTTCTTCCCGGTGTACAAGCCTTTAAGGGACTGCTGCTGCTATACCTCTTGAATGCCCAC TTTACCTGTGTGTATATAGTTACATTTAACACAATGGTTATCTAATAGCTCTAAGTTCAT TAAAAAAAATTTCAAGCCTTTCACTAAAACAATGCCCCACTTGTACATTTTTTATTAAAA AATGTAATGCTTATGTAAAAAAAAGTATGTAATATGCTTTCTTAGAATGATGCTTGATTT AAGCACAATACATATTAAAATGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 48-439, gnl|bosTau2|chr27 (4018852-4019244) | |
| 48-439, gnl|Hg17|chr5 (54866617-54866157) | |
| 48-439, gnl|Mm7|chr13 (109956743-109957164) | |
| 715-872, gnl|bosTau2|chr7 (32553659-32553816) | |
| 715-872, gnl|canFam2|chr5 (55983938-55983741) | |
| 715-872, gnl|danRer3|chrUn (57840908-57841105) | |
| 715-872, gnl|dasNov1|scaffold_14588 (11346-11154) | |
| 715-872, gnl|echTel1|scaffold_276132 (74202-74005) | |
| 715-872, gnl|fr1|chrUn (57288684-57288488) | |
| 715-872, gnl|galGal2|chr8 (25958911-25959111) | |
| 715-872, gnl|hg17|chr1 (56701965-56702162) | |
| 715-872, gnl|Hg17|chr1 (56702127-56701970) | |
| 715-872, gnl|loxAfr1|scaffold_7536 (68599-68403) | |
| 715-872, gnl|mm7|chr4 (104585250-104585053) | |
| 715-872, gnl|Mm7|chr4 (104585086-104585243) | |
| 715-872, gnl|monDom2|scaffold_40 (19247183-19246976) | |
| 715-872, gnl|oryCun1|scaffold_89007 (1245-1048) | |
| 715-872, gnl|panTro1|chr1 (55042187-55042384) | |
| 715-872, gnl|rheMac2|chr1 (59392166-59392363) | |
| 715-872, gnl|rn3|chr5 (126177421-126177224) | |
| 715-872, gnl|tetNig1|chr1_random (2496709-2496903) | |
| 715-872, gnl|xenTro1|scaffold_1 (4719674-4719481) | |
| 1108-1584, gnl|bosTau2|chr27 (4070473-4070948) | |
| 1108-1584, gnl|Hg17|chr5 (54756919-54756453) | |
| 1108-1584, gnl|Mm7|chr13 (110023341-110023769) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-439, gnl|bosTau2|chr27 (4018852-4019244) | |
| 48-439, gnl|Hg17|chr5 (54866617-54866157) | |
| 48-439, gnl|Mm7|chr13 (109956743-109957164) | |
| 715-872, gnl|bosTau2|chr7 (32553659-32553816) | |
| 715-872, gnl|canFam2|chr5 (55983938-55983741) | |
| 715-872, gnl|danRer3|chrUn (57840908-57841105) | |
| 715-872, gnl|dasNov1|scaffold_14588 (11346-11154) | |
| 715-872, gnl|echTel1|scaffold_276132 (74202-74005) | |
| 715-872, gnl|fr1|chrUn (57288684-57288488) | |
| 715-872, gnl|galGal2|chr8 (25958911-25959111) | |
| 715-872, gnl|hg17|chr1 (56701965-56702162) | |
| 715-872, gnl|Hg17|chr1 (56702127-56701970) | |
| 715-872, gnl|loxAfr1|scaffold_7536 (68599-68403) | |
| 715-872, gnl|mm7|chr4 (104585250-104585053) | |
| 715-872, gnl|Mm7|chr4 (104585086-104585243) | |
| 715-872, gnl|monDom2|scaffold_40 (19247183-19246976) | |
| 715-872, gnl|oryCun1|scaffold_89007 (1245-1048) | |
| 715-872, gnl|panTro1|chr1 (55042187-55042384) | |
| 715-872, gnl|rheMac2|chr1 (59392166-59392363) | |
| 715-872, gnl|rn3|chr5 (126177421-126177224) | |
| 715-872, gnl|tetNig1|chr1_random (2496709-2496903) | |
| 715-872, gnl|xenTro1|scaffold_1 (4719674-4719481) | |
| 1108-1584, gnl|bosTau2|chr27 (4070473-4070948) | |
| 1108-1584, gnl|Hg17|chr5 (54756919-54756453) | |
| 1108-1584, gnl|Mm7|chr13 (110023341-110023769) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| spc (1.13366) | |
| nlu (0.958405) | |
| tes (0.831255) | |
| fat (0.737137) | |
| bla (0.621736) | |
| liv (0.585137) | |
| lin (0.582411) | |
| fce (0.543183) | |
| csk (0.422238) | |
| ste (0.405625) | |
| pla (0.401016) | |
| ova (0.387397) | |
| tra (0.369276) | |
| jca (0.34188) | |
| isp (0.300752) | |
| ski (0.29347) | |
| ssp (0.271039) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (1.13366) | |
| nlu (0.958405) | |
| tes (0.831255) | |
| fat (0.737137) | |
| bla (0.621736) | |
| liv (0.585137) | |
| lin (0.582411) | |
| fce (0.543183) | |
| csk (0.422238) | |
| ste (0.405625) | |
| pla (0.401016) | |
| ova (0.387397) | |
| tra (0.369276) | |
| jca (0.34188) | |
| isp (0.300752) | |
| ski (0.29347) | |
| ssp (0.271039) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |