Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H07.3

Sequence:


               
               AAAGCATTCAGGGGACCCCTCTCACCGCAAGAAGTAGAATATTGGATCTTAATTGGAGAA
TCAAGTAGAAAACATCCTGCTATTCACTGTAAAAAATGGGCAGATATCGTTACTGACCTA
AACACTCAGAATCCTGAATATCTAGATATCCGGCACTTAGAGAGGGGGCTACAGTATCGA
AAAACAAAGAAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTCACTGG
CAGAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGGCAAGAATCACAACCTCCA
CCACACGCCCAGGGAATTGCCAAATCTGAGAGTGAGGACAATATCTCTAAGAAGCAGCAT
GGACGTCTGGGCCGCTCTTTCAGTGCTAGTTTCCATCAGGACTCGACATGGAAAAAGATG
TCCAGCATCCATGAGAGAAGGAACAGTGGCTACCAGGGTTACAGTGATTATGATGGGAAT
GACTGACCAGGCTGGTACTGATGACTGGTGTATACACACGGCTGGTCCACACGGGACTGC
ATTAAAGCACTGTGAGGTTTTAAGTCTGTATTACATAGGAACAGATCTTGTGGTACCAAA
CACAGTCTTGCAGTTCCTCCAGTCAATAAGCTTGTATATGATTTTGATGGATGATTTCAG
AAATATAAGCAGATAAGCACAGATTTTTTTTTGTCCTTTTAAAATTAAGAGTATATACAA
TTCTGGACAGTTTCACAATGTCCTATAAAATTACATAGAAACAAATCAAACACAATTTTG
TTCAATAGCATCATTATTTGAAATACTTAAGCATGAAGTGATTTCTTATGACTTGATGCC
CAGATATTTGTTGCAGATAGTTTTATTCCTAAGCTCAAAATGTAAGCTACTATCTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCATTCAGGGGACCCCTCTCACCGCAAGAAGTAGAATATTGGATCTTAATTGGAGAA
TCAAGTAGAAAACATCCTGCTATTCACTGTAAAAAATGGGCAGATATCGTTACTGACCTA
AACACTCAGAATCCTGAATATCTAGATATCCGGCACTTAGAGAGGGGGCTACAGTATCGA
AAAACAAAGAAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTCACTGG
CAGAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGGCAAGAATCACAACCTCCA
CCACACGCCCAGGGAATTGCCAAATCTGAGAGTGAGGACAATATCTCTAAGAAGCAGCAT
GGACGTCTGGGCCGCTCTTTCAGTGCTAGTTTCCATCAGGACTCGACATGGAAAAAGATG
TCCAGCATCCATGAGAGAAGGAACAGTGGCTACCAGGGTTACAGTGATTATGATGGGAAT
GACTGACCAGGCTGGTACTGATGACTGGTGTATACACACGGCTGGTCCACACGGGACTGC
ATTAAAGCACTGTGAGGTTTTAAGTCTGTATTACATAGGAACAGATCTTGTGGTACCAAA
CACAGTCTTGCAGTTCCTCCAGTCAATAAGCTTGTATATGATTTTGATGGATGATTTCAG
AAATATAAGCAGATAAGCACAGATTTTTTTTTGTCCTTTTAAAATTAAGAGTATATACAA
TTCTGGACAGTTTCACAATGTCCTATAAAATTACATAGAAACAAATCAAACACAATTTTG
TTCAATAGCATCATTATTTGAAATACTTAAGCATGAAGTGATTTCTTATGACTTGATGCC
CAGATATTTGTTGCAGATAGTTTTATTCCTAAGCTCAAAATGTAAGCTACTATCTGCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826781|ref|XP_586604.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826781|ref|XP_586604.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-173, gnl|bosTau2|chr8 (16085295-16085466)
               

               
               9-173, gnl|Mm7|chr1 (44378960-44382242)
               


               
               191-891, gnl|bosTau2|chr12 (42353029-42353729)
               

               
               191-891, gnl|Hg17|chr13 (102289921-102290628)
               

               
               191-891, gnl|Mm7|chr1 (44383234-44383925)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-173, gnl|bosTau2|chr8 (16085295-16085466)
               

               
               9-173, gnl|Mm7|chr1 (44378960-44382242)
               


               
               191-891, gnl|bosTau2|chr12 (42353029-42353729)
               

               
               191-891, gnl|Hg17|chr13 (102289921-102290628)
               

               
               191-891, gnl|Mm7|chr1 (44383234-44383925)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

	9-173, gnl\|bosTau2\|chr8 (16085295-16085466)
	9-173, gnl\|Mm7\|chr1 (44378960-44382242)

	191-891, gnl\|bosTau2\|chr12 (42353029-42353729)
	191-891, gnl\|Hg17\|chr13 (102289921-102290628)
	191-891, gnl\|Mm7\|chr1 (44383234-44383925)