Ss1.1-Pig4-TMW8060H08.3
|
GTGGGTCCTAGTGGGGGGTGGGGGGCTCCATCAAAGGTACATCTGGAAAGTTTCTGAAGA
CTTTAAAATATTCTAATCATAGGGAGATACTTGTTTTAGTTTTTTGCATCTGCACTCTTT
GCAGCTGGTTCAGAATTGTAAGAGAGTCTGTATCGGAGGAGAGGAAGGGTCAAGCGGGGC
TGAACTGCATGCAGCTGGCTCCGTTGTGGTTTGTGACACTGTTTCATCATCAATATATCA
TAGTGTATCCAGAAACACGAAGGGTGGTGGAGGGTCCCAGAGTGAAACAAAGACAATGGG
AAGAGGTGATCCAAAAATGTTATGGTACAAATTGGGCTCTTACTACAAAAACCCATCTTT
TTCAGTGCATTACATAAGTATTGTATATCAGTGGAGAAATCTATTATTTCCATGATCAAA
TGTAGTTTTTTGTTAAGGTCAAAGTTCTTTTACAAGCTTTTAAGTGTCCTCAGGGACTCT
GGGAAGGCTGCTGTCAGTGGCTCTGCAGACTGTTCTCTACTTACTATAGGGCTGGTCTGG
AATGGACTGCAGTGATTTCATTTTGAGGCAAAAATCTTCATCCACTTCTACATTTTTTTT
AACCGATAGCAAAAATGCTTATTATCCAGAAACCTAGTCTTTTTCTTATCTAGGACGAAT
CTATAGAAAGGATTTCGCTGAAAGGACAAAGGAGCAAGCCACCCAAAAGGAACAGAACCT
CCTTCTTACACTGTAACTGAGCAAAATTCATTAGCGTGGGCTGCATAGTGTGGCTTATGC
CTGCCCCACTCCTCATTCCAGCCTTCTCTATCCTCCTGCTGTATTTCATATTCACGCATT
AGAGGGTGGGAAGAGATCTCTGGAAGCCAGAACTGCTACTCAAACGGAGGGCACAATGAG
TGTGAATAAATTCACTGCAGAATCCCAAGTCACATCACTTCTTGTTGTTCTGAACAAGAG
TGCTGGATCATTACTGTATATTTTAAGGTATTATAACAGCCTCACCAGAACAGTGAAAGC
TGTTACAACATTTTCCACAGTGGTGTAGACTCCTACTTTAACCTTCATATGTTTTTTCCA
GTCTTACTGTCGTTTGTCAACATGGGAGGGTTGATTAGCTGTTCTAGAATTCAATAAAGT
ATAATATTTCTAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGGGTCCTAGTGGGGGGTGGGGGGCTCCATCAAAGGTACATCTGGAAAGTTTCTGAAGA
CTTTAAAATATTCTAATCATAGGGAGATACTTGTTTTAGTTTTTTGCATCTGCACTCTTT
GCAGCTGGTTCAGAATTGTAAGAGAGTCTGTATCGGAGGAGAGGAAGGGTCAAGCGGGGC
TGAACTGCATGCAGCTGGCTCCGTTGTGGTTTGTGACACTGTTTCATCATCAATATATCA
TAGTGTATCCAGAAACACGAAGGGTGGTGGAGGGTCCCAGAGTGAAACAAAGACAATGGG
AAGAGGTGATCCAAAAATGTTATGGTACAAATTGGGCTCTTACTACAAAAACCCATCTTT
TTCAGTGCATTACATAAGTATTGTATATCAGTGGAGAAATCTATTATTTCCATGATCAAA
TGTAGTTTTTTGTTAAGGTCAAAGTTCTTTTACAAGCTTTTAAGTGTCCTCAGGGACTCT
GGGAAGGCTGCTGTCAGTGGCTCTGCAGACTGTTCTCTACTTACTATAGGGCTGGTCTGG
AATGGACTGCAGTGATTTCATTTTGAGGCAAAAATCTTCATCCACTTCTACATTTTTTTT
AACCGATAGCAAAAATGCTTATTATCCAGAAACCTAGTCTTTTTCTTATCTAGGACGAAT
CTATAGAAAGGATTTCGCTGAAAGGACAAAGGAGCAAGCCACCCAAAAGGAACAGAACCT
CCTTCTTACACTGTAACTGAGCAAAATTCATTAGCGTGGGCTGCATAGTGTGGCTTATGC
CTGCCCCACTCCTCATTCCAGCCTTCTCTATCCTCCTGCTGTATTTCATATTCACGCATT
AGAGGGTGGGAAGAGATCTCTGGAAGCCAGAACTGCTACTCAAACGGAGGGCACAATGAG
TGTGAATAAATTCACTGCAGAATCCCAAGTCACATCACTTCTTGTTGTTCTGAACAAGAG
TGCTGGATCATTACTGTATATTTTAAGGTATTATAACAGCCTCACCAGAACAGTGAAAGC
TGTTACAACATTTTCCACAGTGGTGTAGACTCCTACTTTAACCTTCATATGTTTTTTCCA
GTCTTACTGTCGTTTGTCAACATGGGAGGGTTGATTAGCTGTTCTAGAATTCAATAAAGT
ATAATATTTCTAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-616, gnl|bosTau2|chr26 (17511382-17510755) |
|
1-616, gnl|canFam2|chr28 (18526156-18526727) |
|
1-616, gnl|dasNov1|scaffold_1510 (41086-41617) |
|
1-616, gnl|echTel1|scaffold_316991 (51166-50780) |
|
1-616, gnl|hg17|chr10 (104838658-104839209) |
|
1-616, gnl|Hg17|chr10 (104839344-104838755) |
|
1-616, gnl|loxAfr1|scaffold_1991 (114554-113992) |
|
1-616, gnl|mm7|chr19 (46788578-46789117) |
|
1-616, gnl|Mm7|chr19 (46789248-46788652) |
|
1-616, gnl|monDom2|scaffold_14 (60203696-60203109) |
|
1-616, gnl|oryCun1|scaffold_210383 (59526-60036) |
|
1-616, gnl|panTro1|chr8 (106603168-106603720) |
|
1-616, gnl|rheMac2|chr9 (102776156-102776710) |
|
1-616, gnl|rn3|chr1 (252468547-252469063) |
| |
|
637-1153, gnl|bosTau2|chr26 (17510712-17510206) |
|
637-1153, gnl|Hg17|chr10 (104838732-104837902) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-616, gnl|bosTau2|chr26 (17511382-17510755) |
|
1-616, gnl|canFam2|chr28 (18526156-18526727) |
|
1-616, gnl|dasNov1|scaffold_1510 (41086-41617) |
|
1-616, gnl|echTel1|scaffold_316991 (51166-50780) |
|
1-616, gnl|hg17|chr10 (104838658-104839209) |
|
1-616, gnl|Hg17|chr10 (104839344-104838755) |
|
1-616, gnl|loxAfr1|scaffold_1991 (114554-113992) |
|
1-616, gnl|mm7|chr19 (46788578-46789117) |
|
1-616, gnl|Mm7|chr19 (46789248-46788652) |
|
1-616, gnl|monDom2|scaffold_14 (60203696-60203109) |
|
1-616, gnl|oryCun1|scaffold_210383 (59526-60036) |
|
1-616, gnl|panTro1|chr8 (106603168-106603720) |
|
1-616, gnl|rheMac2|chr9 (102776156-102776710) |
|
1-616, gnl|rn3|chr1 (252468547-252469063) |
| |
|
637-1153, gnl|bosTau2|chr26 (17510712-17510206) |
|
637-1153, gnl|Hg17|chr10 (104838732-104837902) |
|
spl (1.57503) |
|
sag (0.913576) |
|
sin (0.524843) |
|
tbr (0.462535) |
|
lun (0.451467) |
|
liv (0.438853) |
|
sug (0.381874) |
|
bla (0.373042) |
|
cmu (0.372787) |
|
ton (0.351) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
ste (0.270416) |
|
ova (0.258264) |
|
ret (0.257467) |
|
pgl (0.236967) |
|
med (0.232504) |
|
spc (0.226732) |
|
mas (0.210305) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
mga (0.160205) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
tra (0.123092) |
|
spl (1.57503) |
|
sag (0.913576) |
|
sin (0.524843) |
|
tbr (0.462535) |
|
lun (0.451467) |
|
liv (0.438853) |
|
sug (0.381874) |
|
bla (0.373042) |
|
cmu (0.372787) |
|
ton (0.351) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
ste (0.270416) |
|
ova (0.258264) |
|
ret (0.257467) |
|
pgl (0.236967) |
|
med (0.232504) |
|
spc (0.226732) |
|
mas (0.210305) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
mga (0.160205) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
tra (0.123092) |
