Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H08.5

Sequence:


               
               GACATTTTAAAATCAAAGAAACGGCAAGGCTGGAGAACTTTCTTGGTGATTCCTGAACTT
GCACAGGAGCTGCATGTGTGGACTGATAAGAGTTCACTTTTCGAAGAGCTTCAAAGCTTG
GATATTTTCTTGGCTGAACTCTACAAGCACCTTGACAGCAGCAGCAATGAGCGCCCAGAC
ATTAGCTCCATCCAGAGACGGATTAAGAAAGTAACTCACGACATGGACATGTGCTACGGG
ATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTCTTCGCCAGCCAGGTGATG
CGGTATGCCGATCTCTATGCAGCATCTTTCATCAATTTGCTGTATTACCCATTCAGCTAC
CTCTTCAGAGCTGCCCACGTTTTGATGCCTCATGAGTCAACGGTGGAACACACACATGTA
GATATCAATGAAATGGAGTCCCCCCTCGCCACCAGGAACCGCACGTCCGTGGATTTCAAA
GATACCGACTACAAGCGGCATCAGTTGACACGGTCGATTAGTGAGATTAAACCCCCCAAC
CTCTTCCCACTGGCCCCCCAAGAAATTACGCATTGCCATGATGAAGATGATGATGAAGAG
GAGGAGGAGGAAGAGGAAGAATGAGGTGGAAAACCAAAACTCTCAGCACTCATTAAACAA
GTTCTGGCGGGACTCACAGGAGCAAAGGCTGTCTCTCTGTGGGTCCTAGTGGGGGGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTTTAAAATCAAAGAAACGGCAAGGCTGGAGAACTTTCTTGGTGATTCCTGAACTT
GCACAGGAGCTGCATGTGTGGACTGATAAGAGTTCACTTTTCGAAGAGCTTCAAAGCTTG
GATATTTTCTTGGCTGAACTCTACAAGCACCTTGACAGCAGCAGCAATGAGCGCCCAGAC
ATTAGCTCCATCCAGAGACGGATTAAGAAAGTAACTCACGACATGGACATGTGCTACGGG
ATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTCTTCGCCAGCCAGGTGATG
CGGTATGCCGATCTCTATGCAGCATCTTTCATCAATTTGCTGTATTACCCATTCAGCTAC
CTCTTCAGAGCTGCCCACGTTTTGATGCCTCATGAGTCAACGGTGGAACACACACATGTA
GATATCAATGAAATGGAGTCCCCCCTCGCCACCAGGAACCGCACGTCCGTGGATTTCAAA
GATACCGACTACAAGCGGCATCAGTTGACACGGTCGATTAGTGAGATTAAACCCCCCAAC
CTCTTCCCACTGGCCCCCCAAGAAATTACGCATTGCCATGATGAAGATGATGATGAAGAG
GAGGAGGAGGAAGAGGAAGAATGAGGTGGAAAACCAAAACTCTCAGCACTCATTAAACAA
GTTCTGGCGGGACTCACAGGAGCAAAGGCTGTCTCTCTGTGGGTCCTAGTGGGGGGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47187147|emb|CAF94817.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47187147|emb|CAF94817.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               384-543, - strand, RNAz p=0.575533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-543, - strand, RNAz p=0.575533

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               384-720, gnl|bosTau2|chr26 (17511685-17511361)
               

               
               384-720, gnl|Hg17|chr10 (104839656-104839323)
               

               
               384-720, gnl|Mm7|chr19 (46789549-46789226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-720, gnl|bosTau2|chr26 (17511685-17511361)
               

               
               384-720, gnl|Hg17|chr10 (104839656-104839323)
               

               
               384-720, gnl|Mm7|chr19 (46789549-46789226)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)

	384-720, gnl\|bosTau2\|chr26 (17511685-17511361)
	384-720, gnl\|Hg17\|chr10 (104839656-104839323)
	384-720, gnl\|Mm7\|chr19 (46789549-46789226)

	elu (0.385356)
	spl (0.143184)
	pty (0.142714)
	nmm (0.132802)
	ute (0.132784)