Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H10.3

Sequence:


               
               TGGGGACAGTGTGGCTGAGGTTATCCTGTCCTGGATGGAAAACATGCCAGAAGGGAAGTG
GCCTAATTGGATGACTTGTGGACCAGATAATGCCCGGCTGACGTCTCGTCTGGGGGAAGA
ATATGTCAACGTCATGAACATGCTTATTTTCACACTGCCTGGCACGCCCATAACTTACTA
TGGGGAAGAAATAGGAATGAGAAATATTTTAGCCACAAGTCTCAATGAGGTAATTATTTT
TGACACCCTTCTTTCAAAATCACCAATGCAGTGGGACAACAGCTCAAATGCTGGGTTTTC
TGAAGGCAGCCACACGTGGTTACCCACCGGTTCAGACTACCACACTGTTTTTAAATAGGT
CCAAAAGACCCAGCCCAGATCAGCACTGAAGTTATATCAAGAATTAAGTTTGCTTCACGC
CAATGAACTGCTCCTCAGCAGAGGCTGGTTTTGCTATTTGAGGAATGACAACTACTCTGT
TGTGTACACGAGAGAGCTCAACGGCATAGACAGAGTCTTGCTCATGGTTCTGAATTTTGG
AGAATCATCACTGCTAAATCTAAAGGAAGTGATTTCAAATATTCCCACGAGAGTGAGGAT
CAGGTTAAGTACCAATTCTGTCTATACAGGCCGTGAAGTTGATACACACGCCATTTCAGT
GGACAGAGGAGAAGGACTCATCCTTGAATATAACACCAAGAATCTCCTTCATCAGCAAGC
AGCTTTCAGAGATAGATGTTTCATTTCCAACCGGGCATGCTATTCCAGTGTATTCAACAT
ACTGTACAGCTTGTGTTAGGCAGCTTTATGAAAGAGATGGAGAGACTGCCACTCCGTTCC
ACTCTAAGCATTTGTGGTAACCTCAGATGCTGCTGCTGGGTGAACTTCATGAACATTCAT
TAATTCTCAGATATTTCTGTAGCCTGAATGTAATGCTTTAGGAATGGTTCTCAAATGTGT
TTCCAGAATAATAAAATGTTTAAAAGACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGACAGTGTGGCTGAGGTTATCCTGTCCTGGATGGAAAACATGCCAGAAGGGAAGTG
GCCTAATTGGATGACTTGTGGACCAGATAATGCCCGGCTGACGTCTCGTCTGGGGGAAGA
ATATGTCAACGTCATGAACATGCTTATTTTCACACTGCCTGGCACGCCCATAACTTACTA
TGGGGAAGAAATAGGAATGAGAAATATTTTAGCCACAAGTCTCAATGAGGTAATTATTTT
TGACACCCTTCTTTCAAAATCACCAATGCAGTGGGACAACAGCTCAAATGCTGGGTTTTC
TGAAGGCAGCCACACGTGGTTACCCACCGGTTCAGACTACCACACTGTTTTTAAATAGGT
CCAAAAGACCCAGCCCAGATCAGCACTGAAGTTATATCAAGAATTAAGTTTGCTTCACGC
CAATGAACTGCTCCTCAGCAGAGGCTGGTTTTGCTATTTGAGGAATGACAACTACTCTGT
TGTGTACACGAGAGAGCTCAACGGCATAGACAGAGTCTTGCTCATGGTTCTGAATTTTGG
AGAATCATCACTGCTAAATCTAAAGGAAGTGATTTCAAATATTCCCACGAGAGTGAGGAT
CAGGTTAAGTACCAATTCTGTCTATACAGGCCGTGAAGTTGATACACACGCCATTTCAGT
GGACAGAGGAGAAGGACTCATCCTTGAATATAACACCAAGAATCTCCTTCATCAGCAAGC
AGCTTTCAGAGATAGATGTTTCATTTCCAACCGGGCATGCTATTCCAGTGTATTCAACAT
ACTGTACAGCTTGTGTTAGGCAGCTTTATGAAAGAGATGGAGAGACTGCCACTCCGTTCC
ACTCTAAGCATTTGTGGTAACCTCAGATGCTGCTGCTGGGTGAACTTCATGAACATTCAT
TAATTCTCAGATATTTCTGTAGCCTGAATGTAATGCTTTAGGAATGGTTCTCAAATGTGT
TTCCAGAATAATAAAATGTTTAAAAGACAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1313958|emb|CAA64747.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1313958|emb|CAA64747.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               348-466, - strand, RNAz p=0.850304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-466, - strand, RNAz p=0.850304

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB007896, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB007896, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               73-228, gnl|bosTau2|chr11 (13470333-13470488)
               

               
               73-228, gnl|Hg17|chr2 (44451375-44451530)
               

               
               73-228, gnl|Mm7|chr17 (83354563-83354718)
               


               
               348-624, gnl|bosTau2|chr11 (13477155-13477431)
               

               
               348-624, gnl|Hg17|chr2 (44458979-44459254)
               

               
               348-624, gnl|Mm7|chr17 (83358475-83358752)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-228, gnl|bosTau2|chr11 (13470333-13470488)
               

               
               73-228, gnl|Hg17|chr2 (44451375-44451530)
               

               
               73-228, gnl|Mm7|chr17 (83354563-83354718)
               


               
               348-624, gnl|bosTau2|chr11 (13477155-13477431)
               

               
               348-624, gnl|Hg17|chr2 (44458979-44459254)
               

               
               348-624, gnl|Mm7|chr17 (83358475-83358752)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	73-228, gnl\|bosTau2\|chr11 (13470333-13470488)
	73-228, gnl\|Hg17\|chr2 (44451375-44451530)
	73-228, gnl\|Mm7\|chr17 (83354563-83354718)

	348-624, gnl\|bosTau2\|chr11 (13477155-13477431)
	348-624, gnl\|Hg17\|chr2 (44458979-44459254)
	348-624, gnl\|Mm7\|chr17 (83358475-83358752)

	kid (0.259471)
	pgl (0.236967)
	nms (0.213858)
	tes (0.207814)
	jej (0.197844)
	sin (0.174948)
	mcp (0.170648)
	isp (0.150376)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	spc (0.113366)