Ss1.1-Pig4-TMW8060H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGATGAAGACGATGTGCATCAGAGACCCCTGCCCCCACCAACAATGGGGGGGGTGAGC TCCAACACCTTCCCTTCAAGATCCACCAAGCCCTCACCCAAGCACCCCCTCCCACCGACT CACACACCCGGAGCCTTCTCAGAAAGTAACAGTAGTTTTCCGCAGAGTGCCTCCCTGCCG CCATACTTCTCTCAAGGCCCGAGCAACAGACCACCTCCCAGAATCGAAGGCAGGAACTTT TCCTCACCAATTCCAAACAAACCTCGGCCACCATCCCCTGGGGAAGATGAGAATTCATTA AATGAAGAATGGTACGTTTCTTATATTACCCGAACAGAGGCAGAAGCTGCTCTCAGAAGG ATAAACCAGGATGGCACTTTTCTGGTTAGAGACAGCTCTAAAAAAACAATAACCAATCCA TATGTCCTCATGGTGTTGTACAAAGATAAAGTTTACAACATCCAGATCCGTTATCAGGAG GAAAACCAAGTCTACTTGTTGGGAACTGGACTCCGAGGGAAAGAGGACTTTCTGTCTGTG TCAGATATTATTGACTACTTTAGGAAAATGCCGCTTCTACTCATTGATGGAAAAAACCGA GGTTCCAGATACCAGTGCACGTTAACCTATGCTGCAACTTATCCCTAGCAAGCCAGCCAA GCAAAGGAACCTTACTCCTGCCTCTGATGCCAGCATGGGAAGATCAGTCAACTGTGGTAA ACCATCAGACACTTGGGACTGAATTGAACCCCTTAACATGAAGAGTTTTGTCCTTTTGCT TAAAAAGTGTTTGAAATGAAGACTGTCAGATATCCCATAATTTATTTATTCTTCTTCAAT GTTTATAAAATGCATGAGTAATAATGTTCACACTTGAAGTGGAGTAGGGCACTGTAATAA TTCATTTTTAAAAGATACGTATTTGTGAATACCCATTTCCAAGTACATTAGTTTGCCCAG CTACACAAACAATATGGGGCAAGCTGAGCAACACTGAAATGGTAATAATTTTGGTAACAC ATTAAAAACTGAATTTTTTAAAATAGGCACTCCTTTGTCAAAGGCAATCATCAGTTTTAT ATGCACAATTTGAAACTTACTAAAATTCAGTTTCTAGGCAGCAATAATTTAAGAAGCTTC CAAAACATTTCATCCTTTCTTATTTGTTTTTTTTTTTTTTTTGCTGGGGGGATTTTTGTG TACTTTTTTATGAAAAAGATAAATGCATGTCAGGATAACTCCCTGGAATTAAAATTAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGATGAAGACGATGTGCATCAGAGACCCCTGCCCCCACCAACAATGGGGGGGGTGAGC TCCAACACCTTCCCTTCAAGATCCACCAAGCCCTCACCCAAGCACCCCCTCCCACCGACT CACACACCCGGAGCCTTCTCAGAAAGTAACAGTAGTTTTCCGCAGAGTGCCTCCCTGCCG CCATACTTCTCTCAAGGCCCGAGCAACAGACCACCTCCCAGAATCGAAGGCAGGAACTTT TCCTCACCAATTCCAAACAAACCTCGGCCACCATCCCCTGGGGAAGATGAGAATTCATTA AATGAAGAATGGTACGTTTCTTATATTACCCGAACAGAGGCAGAAGCTGCTCTCAGAAGG ATAAACCAGGATGGCACTTTTCTGGTTAGAGACAGCTCTAAAAAAACAATAACCAATCCA TATGTCCTCATGGTGTTGTACAAAGATAAAGTTTACAACATCCAGATCCGTTATCAGGAG GAAAACCAAGTCTACTTGTTGGGAACTGGACTCCGAGGGAAAGAGGACTTTCTGTCTGTG TCAGATATTATTGACTACTTTAGGAAAATGCCGCTTCTACTCATTGATGGAAAAAACCGA GGTTCCAGATACCAGTGCACGTTAACCTATGCTGCAACTTATCCCTAGCAAGCCAGCCAA GCAAAGGAACCTTACTCCTGCCTCTGATGCCAGCATGGGAAGATCAGTCAACTGTGGTAA ACCATCAGACACTTGGGACTGAATTGAACCCCTTAACATGAAGAGTTTTGTCCTTTTGCT TAAAAAGTGTTTGAAATGAAGACTGTCAGATATCCCATAATTTATTTATTCTTCTTCAAT GTTTATAAAATGCATGAGTAATAATGTTCACACTTGAAGTGGAGTAGGGCACTGTAATAA TTCATTTTTAAAAGATACGTATTTGTGAATACCCATTTCCAAGTACATTAGTTTGCCCAG CTACACAAACAATATGGGGCAAGCTGAGCAACACTGAAATGGTAATAATTTTGGTAACAC ATTAAAAACTGAATTTTTTAAAATAGGCACTCCTTTGTCAAAGGCAATCATCAGTTTTAT ATGCACAATTTGAAACTTACTAAAATTCAGTTTCTAGGCAGCAATAATTTAAGAAGCTTC CAAAACATTTCATCCTTTCTTATTTGTTTTTTTTTTTTTTTTGCTGGGGGGATTTTTGTG TACTTTTTTATGAAAAAGATAAATGCATGTCAGGATAACTCCCTGGAATTAAAATTAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 13-146, gnl|bosTau2|chr20 (1230021-1229888) | |
| 13-146, gnl|canFam2|chr4 (44846248-44846009) | |
| 13-146, gnl|dasNov1|scaffold_1233 (94296-94052) | |
| 13-146, gnl|echTel1|scaffold_297572 (10748-10997) | |
| 13-146, gnl|galGal2|chr13 (5680050-5680280) | |
| 13-146, gnl|hg17|chr5 (169617575-169617817) | |
| 13-146, gnl|Hg17|chr5 (169617754-169617619) | |
| 13-146, gnl|mm7|chr11 (34034578-34034348) | |
| 13-146, gnl|Mm7|chr11 (34034400-34034533) | |
| 13-146, gnl|monDom2|scaffold_6 (31221088-31220838) | |
| 13-146, gnl|oryCun1|scaffold_177484 (2067-1829) | |
| 13-146, gnl|panTro1|chr4 (176870234-176870476) | |
| 13-146, gnl|rheMac2|chr6 (166628359-166628601) | |
| 13-146, gnl|rn3|chr10 (19056293-19056059) | |
| 180-291, gnl|bosTau2|chr20 (1225233-1225127) | |
| 180-291, gnl|canFam2|chr4 (44850960-44850534) | |
| 180-291, gnl|dasNov1|scaffold_1233 (98885-98495) | |
| 180-291, gnl|echTel1|scaffold_152300 (309-740) | |
| 180-291, gnl|hg17|chr5 (169612621-169613069) | |
| 180-291, gnl|Hg17|chr5 (169612810-169612701) | |
| 180-291, gnl|loxAfr1|scaffold_5724 (14956-15402) | |
| 180-291, gnl|mm7|chr11 (34039388-34038972) | |
| 180-291, gnl|Mm7|chr11 (34039204-34039312) | |
| 180-291, gnl|monDom2|scaffold_6 (31226393-31225983) | |
| 180-291, gnl|oryCun1|scaffold_177484 (7520-7102) | |
| 180-291, gnl|panTro1|chr4 (176865280-176865728) | |
| 180-291, gnl|rheMac2|chr6 (166623367-166623809) | |
| 180-291, gnl|rn3|chr10 (19061912-19061498) | |
| 524-1260, gnl|bosTau2|chr20 (1219997-1219258) | |
| 524-1260, gnl|Hg17|chr5 (169608403-169607680) | |
| 524-1260, gnl|Mm7|chr11 (34042573-34043254) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-146, gnl|bosTau2|chr20 (1230021-1229888) | |
| 13-146, gnl|canFam2|chr4 (44846248-44846009) | |
| 13-146, gnl|dasNov1|scaffold_1233 (94296-94052) | |
| 13-146, gnl|echTel1|scaffold_297572 (10748-10997) | |
| 13-146, gnl|galGal2|chr13 (5680050-5680280) | |
| 13-146, gnl|hg17|chr5 (169617575-169617817) | |
| 13-146, gnl|Hg17|chr5 (169617754-169617619) | |
| 13-146, gnl|mm7|chr11 (34034578-34034348) | |
| 13-146, gnl|Mm7|chr11 (34034400-34034533) | |
| 13-146, gnl|monDom2|scaffold_6 (31221088-31220838) | |
| 13-146, gnl|oryCun1|scaffold_177484 (2067-1829) | |
| 13-146, gnl|panTro1|chr4 (176870234-176870476) | |
| 13-146, gnl|rheMac2|chr6 (166628359-166628601) | |
| 13-146, gnl|rn3|chr10 (19056293-19056059) | |
| 180-291, gnl|bosTau2|chr20 (1225233-1225127) | |
| 180-291, gnl|canFam2|chr4 (44850960-44850534) | |
| 180-291, gnl|dasNov1|scaffold_1233 (98885-98495) | |
| 180-291, gnl|echTel1|scaffold_152300 (309-740) | |
| 180-291, gnl|hg17|chr5 (169612621-169613069) | |
| 180-291, gnl|Hg17|chr5 (169612810-169612701) | |
| 180-291, gnl|loxAfr1|scaffold_5724 (14956-15402) | |
| 180-291, gnl|mm7|chr11 (34039388-34038972) | |
| 180-291, gnl|Mm7|chr11 (34039204-34039312) | |
| 180-291, gnl|monDom2|scaffold_6 (31226393-31225983) | |
| 180-291, gnl|oryCun1|scaffold_177484 (7520-7102) | |
| 180-291, gnl|panTro1|chr4 (176865280-176865728) | |
| 180-291, gnl|rheMac2|chr6 (166623367-166623809) | |
| 180-291, gnl|rn3|chr10 (19061912-19061498) | |
| 524-1260, gnl|bosTau2|chr20 (1219997-1219258) | |
| 524-1260, gnl|Hg17|chr5 (169608403-169607680) | |
| 524-1260, gnl|Mm7|chr11 (34042573-34043254) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cbl (0.45919) | |
| spl (0.429553) | |
| cly (0.361925) | |
| sin (0.174948) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.45919) | |
| spl (0.429553) | |
| cly (0.361925) | |
| sin (0.174948) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |