Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H17.5

Sequence:


               
               CAAAAATAGAAGCTTATCATACTTGGCAACAGAAAATGTATTTAGGTTAATTCTTTTTTA
CCACTCCAGATTCATGCGTTACATTTTGGTTTTATATTTTAGTTTGGTTCCATGTCTTTA
GAATGATAGCAGATAATTTCTTGATAATGAAATAATCTGAAATTTCTTCTTCAGAGAAAT
AAGTTGAGGTGGTTAAAAGAGTTAAATAAGGAACATTTATAACATCAATCTTGTACATTT
AAACCTGATACAACAATGTGAATTAAGCAAAAATATGCATGGTAGGAGGGCTTTTGTTTT
GATTTCTTTTGATTTTTTGTTTGTTTGGAAGTAAGAGGATGACAGTTATTATTTGGAAGG
AACTTAGATCTTTGGAATAGATAAAGCAGACTTCAAGTTTTGAAGACTGCTGTGTGGGTT
GAGCAGTCATGGTTAACGTTACTTAGAAAGTTAGTCTGACAAGCTTTGCACTTTGGTCAC
ATAAGTGCCCATGTACAAAGTTGGCTTATTGGATCTGCATATTCAGAATATGCAACTACA
CATTTATCCTCTGAGAAATCTTCTGGGGAATCTGATGTATTATTCCAAATGACTTATACT
CTCAGATAAGTGCTTTAAAATACTTGGATTGTCTCAAGATGTTTAAAGCTAGTAAAGTAA
ATAGAAATACAGGCCATTTTAAATGGTAAATTCTAGTTACATGAATAGAGTCTTAAAATC
TGTATCTATAACTAAGATTTGTTTTTCTACCTCCCCAGTGTTACAAATGTTCACTTCTCT
TTTTATAAACCATATTACTATAGGATCAGTAGAATTTTGCCTAATTAAATGAAAGGAACC
AATTAAACAATAGCTTTTTATTTAACTTTAGAGTGGACTTGAAAAACTGTTTTTGGTGGA
ATTTTCATCTGTTGTTGGAACATTTTCTTAGAACAACTAGGAATATGTAATACCCTTGAT
TTTTATTTTCGCTTTCCAATTCTTTAAGTGCAACAGTATATATCTTTGGAGAACTGGAAG
GAGAGAAGATCATTTTTCTACCCTACTCCATATTCTTCAAACTATTTTGAATAGAGATTC
ACTGAGCCATTGCTGGTAGATTGTGCATAGCTGCCTGCTGTGATACTATTGTAAGCAGTT
CAGAGAGATTCACATAGAAGTAAATGTACAGGGGAGTAAAGGCTCTCACTTTAGCCCTGG
GTGTAATGGATCTTGGCAACAAAATAAGATATTTAAGATATTTCCCCTACTCTTAGGCTA
GATTTTGGATATTATGATGCTCCCACTTCTGGTACAGGTTTTTGGGATCATGCTTCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAATAGAAGCTTATCATACTTGGCAACAGAAAATGTATTTAGGTTAATTCTTTTTTA
CCACTCCAGATTCATGCGTTACATTTTGGTTTTATATTTTAGTTTGGTTCCATGTCTTTA
GAATGATAGCAGATAATTTCTTGATAATGAAATAATCTGAAATTTCTTCTTCAGAGAAAT
AAGTTGAGGTGGTTAAAAGAGTTAAATAAGGAACATTTATAACATCAATCTTGTACATTT
AAACCTGATACAACAATGTGAATTAAGCAAAAATATGCATGGTAGGAGGGCTTTTGTTTT
GATTTCTTTTGATTTTTTGTTTGTTTGGAAGTAAGAGGATGACAGTTATTATTTGGAAGG
AACTTAGATCTTTGGAATAGATAAAGCAGACTTCAAGTTTTGAAGACTGCTGTGTGGGTT
GAGCAGTCATGGTTAACGTTACTTAGAAAGTTAGTCTGACAAGCTTTGCACTTTGGTCAC
ATAAGTGCCCATGTACAAAGTTGGCTTATTGGATCTGCATATTCAGAATATGCAACTACA
CATTTATCCTCTGAGAAATCTTCTGGGGAATCTGATGTATTATTCCAAATGACTTATACT
CTCAGATAAGTGCTTTAAAATACTTGGATTGTCTCAAGATGTTTAAAGCTAGTAAAGTAA
ATAGAAATACAGGCCATTTTAAATGGTAAATTCTAGTTACATGAATAGAGTCTTAAAATC
TGTATCTATAACTAAGATTTGTTTTTCTACCTCCCCAGTGTTACAAATGTTCACTTCTCT
TTTTATAAACCATATTACTATAGGATCAGTAGAATTTTGCCTAATTAAATGAAAGGAACC
AATTAAACAATAGCTTTTTATTTAACTTTAGAGTGGACTTGAAAAACTGTTTTTGGTGGA
ATTTTCATCTGTTGTTGGAACATTTTCTTAGAACAACTAGGAATATGTAATACCCTTGAT
TTTTATTTTCGCTTTCCAATTCTTTAAGTGCAACAGTATATATCTTTGGAGAACTGGAAG
GAGAGAAGATCATTTTTCTACCCTACTCCATATTCTTCAAACTATTTTGAATAGAGATTC
ACTGAGCCATTGCTGGTAGATTGTGCATAGCTGCCTGCTGTGATACTATTGTAAGCAGTT
CAGAGAGATTCACATAGAAGTAAATGTACAGGGGAGTAAAGGCTCTCACTTTAGCCCTGG
GTGTAATGGATCTTGGCAACAAAATAAGATATTTAAGATATTTCCCCTACTCTTAGGCTA
GATTTTGGATATTATGATGCTCCCACTTCTGGTACAGGTTTTTGGGATCATGCTTCAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-595, - strand, RNAz p=0.832019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-595, - strand, RNAz p=0.832019

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr5 (50136023-50134693)
               

               
               1-1320, gnl|Hg17|chr12 (22730048-22731437)
               

               
               1-1320, gnl|Mm7|chr6 (143295108-143296376)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr5 (50136023-50134693)
               

               
               1-1320, gnl|Hg17|chr12 (22730048-22731437)
               

               
               1-1320, gnl|Mm7|chr6 (143295108-143296376)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lin (0.291206)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	1-1320, gnl\|bosTau2\|chr5 (50136023-50134693)
	1-1320, gnl\|Hg17\|chr12 (22730048-22731437)
	1-1320, gnl\|Mm7\|chr6 (143295108-143296376)