Ss1.1-Pig4-TMW8060H22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGTTTCTCCGAGCTGGCCTAGCCGTTCTCTCTCCGCTTCTCCGCACTCTCCGGCCTG CTCCGGTCGCTGCGATGAGCACTGGCACCTTCATCGTGTCACAGCCACTTAATTACCGCG GCGGGGCCCGCGTGGATCCGGTGGACGCCTCCGGCACCGAGAAGGCGTTCGAGCCGGCAA CCGGTCGAGTGATAGCTACTTTCACATGTTCAGGAGAAAAGGAAGTAAATTTGGCTGTTC AAGATGCAAAGGCTGCCTTTAAAATATGGAGCCAGAAATCTGGCATGGAGCGTTGCCGAA TTCTTTTGGAGGCTGCCAGGATAATAAGGGAACGGAAGGAGGAGATCGCCACCATGGAGA CCATCAACAATGGCAAGTCCATCTTTGAGGCCCGATTGGACGTTGACATTTCCTGGCAGT GTCTGGAGTACTATGCAGGCTTGGCGGGATCCATGGCTGGAGAGCACATTCAGCTCCCTG GCGGTTCCTTTGGTTACACCAGAAGAGAGCCACTGGGGGTGTGTGTGGGAATTGGAGCGT GGAACTACCCCTTTCAGATTGCCTGCTGGAAGTCGGCTCCAGCGCTGGCCTGTGGTAATG CCATGATCTTTAAACCTTCTCCCTTCACGCCTCTGTCTGTCTTGCTGCTGGCCGAAATCT ATACTGAGGCTGGCGTTCCTCCTGGGCTTTTCAACGTGGTGCAGGGAGGGGCCACCACAG GCCAGCTTCTGTGTCAGCATCGTGATGTGGCCAAAATCTCCTTCACTGGAAGTGTGCCCA CCGGCTCAAAGATCATGGAGATGTCAGCTAAAGGAATCAAACCTGTGACCTTGGAACTTG GAGGCAAATCTCCACTGATCATCTTCTCAGATTGTGACATGGGGAATGCGGTGAAGGGGG CGCTGATGGCCAACTTCCTCACGCAAGGCGAGGTTTGTTGTAATGGTACAAGGGTATTTG TGCAAAAGGAAATTCTTGATAAATTTACAGAGGAAGTGGTGAAACAGACCCAAAGGATAA AAATTGGAGATCCCCTTCTGGAAGATACAAGGATGGGTCCCCTGATCAACCGACCACATC TGGAGCGAATCCTTGGGTTTGTTAAAGTGGCGAAGGAACAGGGTGCTAAAGTGTTATGTG GTGGAGACCTATATGTACCTGAAGATCCCAAATTAAAGGAGGGGTATTACATGAGACCTT GTGTGTTAACCAACTGCAGAGATGACATGACCTGTGTGAAAGAAGAGATCTTTGGGCCAG TTATGTCCATTTTATCATTTGACACTGAAGCTGAGGTTGTGGAAAGAGCCAATGATACCA CTTTCGGACTAGCTGCCGGTGTCTTCACCAGGGACATCCAGCGTGCCCACAGAGTGGTGG CTGAGCTTCAGGCTGGAATGTGCTTCATTAACAACTATAATGTCAGCCCTGTGGAGTTGC CCTTTGGAGGATATAAGAAGTCAGGGTTTGGCAGAGAGAATGGCCGTGTGACCATTGAAT ATTATTCACAACTGAAGACTGTGTGCGTGGAAATGGGTGATGTGGAGTCTGTTTTTTAAA AACCTTCAGTGAAACCAGTGAACACGGCTGGAATGAGAACCAGCAGCCTTGATGGAGGAG GTGCAGCTGCCTACCCTTTTACATCCAGAATGTTGGTCACTCAGGATGAGAGAGTGGTTC ACTGTTACTCTTCATTACTCAGTCAATTTCCTAAGTGAAAATGTGCATAAGTGCCTTTTA GATTCTAATCAAGAAAGCTGTAGTTTCCTTCAAAGCACATTTCTCTGAATTCTTTGAGAG CCACTGACACACTTCCAGAGAACAGGGGGTGGGACCAGGATTTTGTTCTTCCAGAATCTA CTCACTGCCGAGCTCATTCTCTAGCTTGCTTTAAAGAACCCATCCTTTAGAAGTTCCTGG TGGGATCAGTGCAGGTGATTTCTGCTTCTTGGCATTTCTTAAGCCATGCCCCCTTGTCGT TCCACTGAGAAGGTTGACAGTCGGGGAGAGAGGGCCCAGTTCAGTGTGAATGCTGATGGA CCAGAGCCAGCACAGCGGTGAGGAAACTGGCCTCCAGTCCGTAAGTCTGATGTTCTTCCC AGCTGAGCTATTTCAGTGAGGGTTGCAGTCCTTGAATTATAGCTTGTTCTCTTATGACAG AAGAGTTATCTTTTAAATGTACAAATTACTTGTATGCTACTACAGTATACTGAAATGAAA TAAATCATACCTTCAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGTTTCTCCGAGCTGGCCTAGCCGTTCTCTCTCCGCTTCTCCGCACTCTCCGGCCTG CTCCGGTCGCTGCGATGAGCACTGGCACCTTCATCGTGTCACAGCCACTTAATTACCGCG GCGGGGCCCGCGTGGATCCGGTGGACGCCTCCGGCACCGAGAAGGCGTTCGAGCCGGCAA CCGGTCGAGTGATAGCTACTTTCACATGTTCAGGAGAAAAGGAAGTAAATTTGGCTGTTC AAGATGCAAAGGCTGCCTTTAAAATATGGAGCCAGAAATCTGGCATGGAGCGTTGCCGAA TTCTTTTGGAGGCTGCCAGGATAATAAGGGAACGGAAGGAGGAGATCGCCACCATGGAGA CCATCAACAATGGCAAGTCCATCTTTGAGGCCCGATTGGACGTTGACATTTCCTGGCAGT GTCTGGAGTACTATGCAGGCTTGGCGGGATCCATGGCTGGAGAGCACATTCAGCTCCCTG GCGGTTCCTTTGGTTACACCAGAAGAGAGCCACTGGGGGTGTGTGTGGGAATTGGAGCGT GGAACTACCCCTTTCAGATTGCCTGCTGGAAGTCGGCTCCAGCGCTGGCCTGTGGTAATG CCATGATCTTTAAACCTTCTCCCTTCACGCCTCTGTCTGTCTTGCTGCTGGCCGAAATCT ATACTGAGGCTGGCGTTCCTCCTGGGCTTTTCAACGTGGTGCAGGGAGGGGCCACCACAG GCCAGCTTCTGTGTCAGCATCGTGATGTGGCCAAAATCTCCTTCACTGGAAGTGTGCCCA CCGGCTCAAAGATCATGGAGATGTCAGCTAAAGGAATCAAACCTGTGACCTTGGAACTTG GAGGCAAATCTCCACTGATCATCTTCTCAGATTGTGACATGGGGAATGCGGTGAAGGGGG CGCTGATGGCCAACTTCCTCACGCAAGGCGAGGTTTGTTGTAATGGTACAAGGGTATTTG TGCAAAAGGAAATTCTTGATAAATTTACAGAGGAAGTGGTGAAACAGACCCAAAGGATAA AAATTGGAGATCCCCTTCTGGAAGATACAAGGATGGGTCCCCTGATCAACCGACCACATC TGGAGCGAATCCTTGGGTTTGTTAAAGTGGCGAAGGAACAGGGTGCTAAAGTGTTATGTG GTGGAGACCTATATGTACCTGAAGATCCCAAATTAAAGGAGGGGTATTACATGAGACCTT GTGTGTTAACCAACTGCAGAGATGACATGACCTGTGTGAAAGAAGAGATCTTTGGGCCAG TTATGTCCATTTTATCATTTGACACTGAAGCTGAGGTTGTGGAAAGAGCCAATGATACCA CTTTCGGACTAGCTGCCGGTGTCTTCACCAGGGACATCCAGCGTGCCCACAGAGTGGTGG CTGAGCTTCAGGCTGGAATGTGCTTCATTAACAACTATAATGTCAGCCCTGTGGAGTTGC CCTTTGGAGGATATAAGAAGTCAGGGTTTGGCAGAGAGAATGGCCGTGTGACCATTGAAT ATTATTCACAACTGAAGACTGTGTGCGTGGAAATGGGTGATGTGGAGTCTGTTTTTTAAA AACCTTCAGTGAAACCAGTGAACACGGCTGGAATGAGAACCAGCAGCCTTGATGGAGGAG GTGCAGCTGCCTACCCTTTTACATCCAGAATGTTGGTCACTCAGGATGAGAGAGTGGTTC ACTGTTACTCTTCATTACTCAGTCAATTTCCTAAGTGAAAATGTGCATAAGTGCCTTTTA GATTCTAATCAAGAAAGCTGTAGTTTCCTTCAAAGCACATTTCTCTGAATTCTTTGAGAG CCACTGACACACTTCCAGAGAACAGGGGGTGGGACCAGGATTTTGTTCTTCCAGAATCTA CTCACTGCCGAGCTCATTCTCTAGCTTGCTTTAAAGAACCCATCCTTTAGAAGTTCCTGG TGGGATCAGTGCAGGTGATTTCTGCTTCTTGGCATTTCTTAAGCCATGCCCCCTTGTCGT TCCACTGAGAAGGTTGACAGTCGGGGAGAGAGGGCCCAGTTCAGTGTGAATGCTGATGGA CCAGAGCCAGCACAGCGGTGAGGAAACTGGCCTCCAGTCCGTAAGTCTGATGTTCTTCCC AGCTGAGCTATTTCAGTGAGGGTTGCAGTCCTTGAATTATAGCTTGTTCTCTTATGACAG AAGAGTTATCTTTTAAATGTACAAATTACTTGTATGCTACTACAGTATACTGAAATGAAA TAAATCATACCTTCAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 183-330, gnl|bosTau2|chr3 (3900854-3901001) | |
| 183-330, gnl|canFam2|chr38 (20646673-20646507) | |
| 183-330, gnl|danRer3|chrUn (141260116-141260277) | |
| 183-330, gnl|dasNov1|scaffold_131752 (4185-4355) | |
| 183-330, gnl|echTel1|scaffold_309730 (76259-76426) | |
| 183-330, gnl|fr1|chrUn (88642825-88642662) | |
| 183-330, gnl|galGal2|chr8 (5545516-5545685) | |
| 183-330, gnl|hg17|chr1 (162396142-162396312) | |
| 183-330, gnl|Hg17|chr1 (162396293-162396146) | |
| 183-330, gnl|mm7|chr1 (167327858-167327688) | |
| 183-330, gnl|Mm7|chr1 (167327705-167327852) | |
| 183-330, gnl|monDom2|scaffold_16 (16106361-16106540) | |
| 183-330, gnl|oryCun1|scaffold_181225 (5806-5974) | |
| 183-330, gnl|rheMac2|chr1 (195541562-195541732) | |
| 183-330, gnl|rn3|chr13 (83033494-83033324) | |
| 183-330, gnl|xenTro1|scaffold_160 (989514-989683) | |
| 594-791, gnl|bosTau2|chr3 (3913723-3913920) | |
| 594-791, gnl|Hg17|chr1 (162381579-162381382) | |
| 594-791, gnl|Mm7|chr1 (167331715-167331912) | |
| 931-1122, gnl|bosTau2|chr3 (3917983-3918174) | |
| 931-1122, gnl|canFam2|chr38 (20655073-20654865) | |
| 931-1122, gnl|danRer3|chrUn (141255945-141256150) | |
| 931-1122, gnl|fr1|chrUn (45731965-45732174) | |
| 931-1122, gnl|galGal2|chr8 (5541764-5541968) | |
| 931-1122, gnl|hg17|chr1 (162370154-162370369) | |
| 931-1122, gnl|Hg17|chr1 (162370347-162370156) | |
| 931-1122, gnl|loxAfr1|scaffold_7526 (36364-36150) | |
| 931-1122, gnl|mm7|chr1 (167336782-167336569) | |
| 931-1122, gnl|Mm7|chr1 (167336587-167336778) | |
| 931-1122, gnl|monDom2|scaffold_16 (16093847-16094071) | |
| 931-1122, gnl|oryCun1|scaffold_199846 (12767-12554) | |
| 931-1122, gnl|rheMac2|chr1 (195512194-195512409) | |
| 931-1122, gnl|rn3|chr13 (83042306-83042093) | |
| 931-1122, gnl|tetNig1|chr15 (3504803-3504997) | |
| 931-1122, gnl|xenTro1|scaffold_160 (982323-982529) | |
| 1212-1352, gnl|bosTau2|chr3 (3922132-3922272) | |
| 1212-1352, gnl|Hg17|chr1 (162368343-162368203) | |
| 1212-1352, gnl|Mm7|chr1 (167339696-167339836) | |
| 1461-2015, gnl|bosTau2|chr3 (3927034-3927571) | |
| 1461-2015, gnl|Hg17|chr1 (162364043-162363331) | |
| 1461-2015, gnl|Mm7|chr1 (167342587-167343066) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-330, gnl|bosTau2|chr3 (3900854-3901001) | |
| 183-330, gnl|canFam2|chr38 (20646673-20646507) | |
| 183-330, gnl|danRer3|chrUn (141260116-141260277) | |
| 183-330, gnl|dasNov1|scaffold_131752 (4185-4355) | |
| 183-330, gnl|echTel1|scaffold_309730 (76259-76426) | |
| 183-330, gnl|fr1|chrUn (88642825-88642662) | |
| 183-330, gnl|galGal2|chr8 (5545516-5545685) | |
| 183-330, gnl|hg17|chr1 (162396142-162396312) | |
| 183-330, gnl|Hg17|chr1 (162396293-162396146) | |
| 183-330, gnl|mm7|chr1 (167327858-167327688) | |
| 183-330, gnl|Mm7|chr1 (167327705-167327852) | |
| 183-330, gnl|monDom2|scaffold_16 (16106361-16106540) | |
| 183-330, gnl|oryCun1|scaffold_181225 (5806-5974) | |
| 183-330, gnl|rheMac2|chr1 (195541562-195541732) | |
| 183-330, gnl|rn3|chr13 (83033494-83033324) | |
| 183-330, gnl|xenTro1|scaffold_160 (989514-989683) | |
| 594-791, gnl|bosTau2|chr3 (3913723-3913920) | |
| 594-791, gnl|Hg17|chr1 (162381579-162381382) | |
| 594-791, gnl|Mm7|chr1 (167331715-167331912) | |
| 931-1122, gnl|bosTau2|chr3 (3917983-3918174) | |
| 931-1122, gnl|canFam2|chr38 (20655073-20654865) | |
| 931-1122, gnl|danRer3|chrUn (141255945-141256150) | |
| 931-1122, gnl|fr1|chrUn (45731965-45732174) | |
| 931-1122, gnl|galGal2|chr8 (5541764-5541968) | |
| 931-1122, gnl|hg17|chr1 (162370154-162370369) | |
| 931-1122, gnl|Hg17|chr1 (162370347-162370156) | |
| 931-1122, gnl|loxAfr1|scaffold_7526 (36364-36150) | |
| 931-1122, gnl|mm7|chr1 (167336782-167336569) | |
| 931-1122, gnl|Mm7|chr1 (167336587-167336778) | |
| 931-1122, gnl|monDom2|scaffold_16 (16093847-16094071) | |
| 931-1122, gnl|oryCun1|scaffold_199846 (12767-12554) | |
| 931-1122, gnl|rheMac2|chr1 (195512194-195512409) | |
| 931-1122, gnl|rn3|chr13 (83042306-83042093) | |
| 931-1122, gnl|tetNig1|chr15 (3504803-3504997) | |
| 931-1122, gnl|xenTro1|scaffold_160 (982323-982529) | |
| 1212-1352, gnl|bosTau2|chr3 (3922132-3922272) | |
| 1212-1352, gnl|Hg17|chr1 (162368343-162368203) | |
| 1212-1352, gnl|Mm7|chr1 (167339696-167339836) | |
| 1461-2015, gnl|bosTau2|chr3 (3927034-3927571) | |
| 1461-2015, gnl|Hg17|chr1 (162364043-162363331) | |
| 1461-2015, gnl|Mm7|chr1 (167342587-167343066) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| cki (3.63516) | |
| cje (2.80899) | |
| cmu (1.67754) | |
| lun (1.65538) | |
| kid (1.55682) | |
| cut (0.849618) | |
| cty (0.832639) | |
| cli (0.764059) | |
| fat (0.737137) | |
| sin (0.524843) | |
| pro (0.512033) | |
| lin (0.436808) | |
| spl (0.429553) | |
| ste (0.405625) | |
| nep (0.36785) | |
| sto (0.359648) | |
| gul (0.355177) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| che (0.272628) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| thg (0.253582) | |
| eep (0.245128) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (3.63516) | |
| cje (2.80899) | |
| cmu (1.67754) | |
| lun (1.65538) | |
| kid (1.55682) | |
| cut (0.849618) | |
| cty (0.832639) | |
| cli (0.764059) | |
| fat (0.737137) | |
| sin (0.524843) | |
| pro (0.512033) | |
| lin (0.436808) | |
| spl (0.429553) | |
| ste (0.405625) | |
| nep (0.36785) | |
| sto (0.359648) | |
| gul (0.355177) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| che (0.272628) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| thg (0.253582) | |
| eep (0.245128) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| eje (0.0988338) |