Ss1.1-Pig4-TMW8060I09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGGATTTTGTGTGTCTGTGGGTGGTTTTTGATTTGTTTCTTTTCTTTTTTTTGTAGT TGTCTAACTTTCCTTAAGTGCTTTTTTTTTTTTTTTTTTTTTTAATTTTAAAGTAAGCTG CAGGCTTTGGCTTGGAAAACCCCAGGGGAGTAGGGGGCAGAAACCTGAGGCTGCTGCCCC TTTATCTGCCTTCACGGTACTGTCCCCTTCCCTCAGCTCCTCCCTAACCCTGTGAGCCAG GCCTCAGACCTTCCAGCTAACCGCTTCCCATGAGCCACTACTCTGATGTCAGCCTATAAC CAAAGGAGCTGGGGGTCTGGGCCTGGTGACCAACCCTTCTCCGCCCACTCAATCAGGGTG CTCCCCACCTGCAGGCAGGAGGCAACACCCTATCTGCTACCATCAGCCCCTTCCAGAGCC CACTGCCCCGCCCTGCCCTGTCTAGCCCAGCCGTACCCTGCTCTGCCCCATCTGGGGATG CTCTGCTCAGGGATGGGCCGGCGGGGCTGCCCCAGCCTCCCTGGTAGGCAGAGACTCTGG AAACCTTTGGGGGCCAGTTTTTGGCCATGTGATCCCAGGGGTGCACATGGGCCCCTTGGG AATCTGAACAGAAGGGCGCGGGAGGGAGGGGCGCACCCCTGCGGTCCTGCTCTGCTGGTC TAGCGGGCAGCTGCCCACCCTACCCCACCCCGCACCGCGGGCTCCTGAGTCGGCAGATTA AGCATTTTATAAATTGTATTTTAAATACATGTTTTAAACTCGCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGGATTTTGTGTGTCTGTGGGTGGTTTTTGATTTGTTTCTTTTCTTTTTTTTGTAGT TGTCTAACTTTCCTTAAGTGCTTTTTTTTTTTTTTTTTTTTTTAATTTTAAAGTAAGCTG CAGGCTTTGGCTTGGAAAACCCCAGGGGAGTAGGGGGCAGAAACCTGAGGCTGCTGCCCC TTTATCTGCCTTCACGGTACTGTCCCCTTCCCTCAGCTCCTCCCTAACCCTGTGAGCCAG GCCTCAGACCTTCCAGCTAACCGCTTCCCATGAGCCACTACTCTGATGTCAGCCTATAAC CAAAGGAGCTGGGGGTCTGGGCCTGGTGACCAACCCTTCTCCGCCCACTCAATCAGGGTG CTCCCCACCTGCAGGCAGGAGGCAACACCCTATCTGCTACCATCAGCCCCTTCCAGAGCC CACTGCCCCGCCCTGCCCTGTCTAGCCCAGCCGTACCCTGCTCTGCCCCATCTGGGGATG CTCTGCTCAGGGATGGGCCGGCGGGGCTGCCCCAGCCTCCCTGGTAGGCAGAGACTCTGG AAACCTTTGGGGGCCAGTTTTTGGCCATGTGATCCCAGGGGTGCACATGGGCCCCTTGGG AATCTGAACAGAAGGGCGCGGGAGGGAGGGGCGCACCCCTGCGGTCCTGCTCTGCTGGTC TAGCGGGCAGCTGCCCACCCTACCCCACCCCGCACCGCGGGCTCCTGAGTCGGCAGATTA AGCATTTTATAAATTGTATTTTAAATACATGTTTTAAACTCGCCAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 426-580, - strand, RNAz p=0.980516 | |
| 644-767, - strand, RNAz p=0.894922 | |
| 650-767, - strand, RNAz p=0.505517 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 426-580, - strand, RNAz p=0.980516 | |
| 644-767, - strand, RNAz p=0.894922 | |
| 650-767, - strand, RNAz p=0.505517 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 389-580, gnl|bosTau2|chr2 (86010995-86010812) | |
| 389-580, gnl|Hg17|chr1 (16469566-16469780) | |
| 389-580, gnl|Mm7|chr4 (140491828-140491633) | |
| 586-767, gnl|bosTau2|chr2 (86010826-86010654) | |
| 586-767, gnl|canFam2|chr2 (84221643-84221488) | |
| 586-767, gnl|canFam2|chr2 (84221643-84221488) | |
| 586-767, gnl|canFam2|chr2 (84221488-84221643) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33292-33449) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33292-33449) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33449-33292) | |
| 586-767, gnl|echTel1|scaffold_289908 (42626-42768) | |
| 586-767, gnl|echTel1|scaffold_289908 (42626-42768) | |
| 586-767, gnl|echTel1|scaffold_289908 (42768-42626) | |
| 586-767, gnl|Hg17|chr1 (16469746-16469948) | |
| 586-767, gnl|hg17|chr16 (16225428-16225584) | |
| 586-767, gnl|hg17|chr16 (14826663-14826819) | |
| 586-767, gnl|hg17|chr16 (18489309-18489465) | |
| 586-767, gnl|mm7|chr4 (140491641-140491494) | |
| 586-767, gnl|mm7|chr4 (140491641-140491494) | |
| 586-767, gnl|mm7|chr4 (140491494-140491641) | |
| 586-767, gnl|Mm7|chr4 (140491647-140491454) | |
| 586-767, gnl|monDom2|scaffold_109 (2564215-2564068) | |
| 586-767, gnl|monDom2|scaffold_109 (2564215-2564068) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3570-3415) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3570-3415) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3415-3570) | |
| 586-767, gnl|panTro1|chr18_random (4597569-4597725) | |
| 586-767, gnl|panTro1|chr18_random (4597569-4597725) | |
| 586-767, gnl|panTro1|chr18_random (4597725-4597569) | |
| 586-767, gnl|rheMac2|chr1 (19193166-19193300) | |
| 586-767, gnl|rheMac2|chr1 (19193166-19193300) | |
| 586-767, gnl|rheMac2|chr1 (19193300-19193166) | |
| 586-767, gnl|rn3|chr5 (159983459-159983317) | |
| 586-767, gnl|rn3|chr5 (159983459-159983317) | |
| 586-767, gnl|rn3|chr5 (159983317-159983459) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 389-580, gnl|bosTau2|chr2 (86010995-86010812) | |
| 389-580, gnl|Hg17|chr1 (16469566-16469780) | |
| 389-580, gnl|Mm7|chr4 (140491828-140491633) | |
| 586-767, gnl|bosTau2|chr2 (86010826-86010654) | |
| 586-767, gnl|canFam2|chr2 (84221643-84221488) | |
| 586-767, gnl|canFam2|chr2 (84221643-84221488) | |
| 586-767, gnl|canFam2|chr2 (84221488-84221643) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33292-33449) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33292-33449) | |
| 586-767, gnl|dasNov1|scaffold_14227 (33449-33292) | |
| 586-767, gnl|echTel1|scaffold_289908 (42626-42768) | |
| 586-767, gnl|echTel1|scaffold_289908 (42626-42768) | |
| 586-767, gnl|echTel1|scaffold_289908 (42768-42626) | |
| 586-767, gnl|Hg17|chr1 (16469746-16469948) | |
| 586-767, gnl|hg17|chr16 (16225428-16225584) | |
| 586-767, gnl|hg17|chr16 (14826663-14826819) | |
| 586-767, gnl|hg17|chr16 (18489309-18489465) | |
| 586-767, gnl|mm7|chr4 (140491641-140491494) | |
| 586-767, gnl|mm7|chr4 (140491641-140491494) | |
| 586-767, gnl|mm7|chr4 (140491494-140491641) | |
| 586-767, gnl|Mm7|chr4 (140491647-140491454) | |
| 586-767, gnl|monDom2|scaffold_109 (2564215-2564068) | |
| 586-767, gnl|monDom2|scaffold_109 (2564215-2564068) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3570-3415) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3570-3415) | |
| 586-767, gnl|oryCun1|scaffold_184004 (3415-3570) | |
| 586-767, gnl|panTro1|chr18_random (4597569-4597725) | |
| 586-767, gnl|panTro1|chr18_random (4597569-4597725) | |
| 586-767, gnl|panTro1|chr18_random (4597725-4597569) | |
| 586-767, gnl|rheMac2|chr1 (19193166-19193300) | |
| 586-767, gnl|rheMac2|chr1 (19193166-19193300) | |
| 586-767, gnl|rheMac2|chr1 (19193300-19193166) | |
| 586-767, gnl|rn3|chr5 (159983459-159983317) | |
| 586-767, gnl|rn3|chr5 (159983459-159983317) | |
| 586-767, gnl|rn3|chr5 (159983317-159983459) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nep (0.183925) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |