Non-Coding RNA Search

Ss1.1-Pig4-TMW8060I15.3

Sequence:


               
               AGCAGCCTCCAGCCAGAGACCTTGGGTGGAATTAAGGGACTCGTGACTTGGGGACCTGTC
CCTGTGAGGGGCGCACTTGCCCCTCTTTCTCTGTTTGGGGCTCAGGAGTGCGCAAAGCAG
TAAGAGCTCTAAGCGAAGCCAGGAGTTTATTTTGCTTTTGATGCAAAGGAAGCAGGAACC
ACAAAGCTTCCGCTCAGGGTCTTTCTTCCCCCAAGTCTCCAAAGGCTCTTCAGCGTCACA
AGCCAGCAACTCTCTTTGCATGAAAATTTCAAAGTTTAATTAATATAATTAAAGGCAACA
GCAAGCAGCAGCCTGTGAAGATTTTGCTCATCTTTTTTATGCCTTTTGACATTGAATGAC
CTATTACTGTATGAGCATTGCTCGGAGTTTGAGGGGCACCCCACCTTGGTTGTGAGTCCT
AGAGGGAGAACAAAGCACTCCCCCCATCAATTTGGAAATTAAATTTTCAGGCGGGTCGAT
CACCGCAAAATAGCGAAAATGTACGTATGATCATTTTTTTGAAGAAGAGCCACCCTCGTG
TCACGTCGACGGTGCCAAATTGTGTTAGCGGGAGCGGAAGCACTGTGGGGGAGGACGGAG
GCAGCAGCCGAAGGAAAAAGCTCAGAGGATCCAGTCACTTTCGATACTGTCCTTCAGAGG
CGAAATGGATATTCGACTGGAGACCTGACACAGCGCGCCTGCTTTGATGGGAACTGGTAT
AGACAATGACCAGTGGCTGGGTCAGTGGGATGTCTCTCTGTGCGCACAGAGGCTTATCAA
ATGACACTAAAAATAAGTTCAACAACCATCACACTGGAAGGGAGAAGGCGGACATTGCAT
GTTTGGCGGGCATGTGAGTGCACGAGACGGAAACAGCGGTGGGGAGCAGCCGGTGTAATT
GCCCCCATTGTGCTCGCAATGGAAATTTCAAAGGACGCAGTGATTCGGATGGTTGGTGTC
CGGATTTGTGGCACTGCTCCAAGAAGCCTTACTCACGCACCGATTTTTCTATATAGCTCT
CTATAGATATAGCCATGTGTATCCTCTCGCTTGAATCCTTGGCTCAAGTTTATTTATATC
ACTGGCTGGCTGGATCCACAGTCATGTGTTTACCTATTCATAAATAAAATTTTACCTGTG
AAAAAAAAAAAATTTTCTTTAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCCTCCAGCCAGAGACCTTGGGTGGAATTAAGGGACTCGTGACTTGGGGACCTGTC
CCTGTGAGGGGCGCACTTGCCCCTCTTTCTCTGTTTGGGGCTCAGGAGTGCGCAAAGCAG
TAAGAGCTCTAAGCGAAGCCAGGAGTTTATTTTGCTTTTGATGCAAAGGAAGCAGGAACC
ACAAAGCTTCCGCTCAGGGTCTTTCTTCCCCCAAGTCTCCAAAGGCTCTTCAGCGTCACA
AGCCAGCAACTCTCTTTGCATGAAAATTTCAAAGTTTAATTAATATAATTAAAGGCAACA
GCAAGCAGCAGCCTGTGAAGATTTTGCTCATCTTTTTTATGCCTTTTGACATTGAATGAC
CTATTACTGTATGAGCATTGCTCGGAGTTTGAGGGGCACCCCACCTTGGTTGTGAGTCCT
AGAGGGAGAACAAAGCACTCCCCCCATCAATTTGGAAATTAAATTTTCAGGCGGGTCGAT
CACCGCAAAATAGCGAAAATGTACGTATGATCATTTTTTTGAAGAAGAGCCACCCTCGTG
TCACGTCGACGGTGCCAAATTGTGTTAGCGGGAGCGGAAGCACTGTGGGGGAGGACGGAG
GCAGCAGCCGAAGGAAAAAGCTCAGAGGATCCAGTCACTTTCGATACTGTCCTTCAGAGG
CGAAATGGATATTCGACTGGAGACCTGACACAGCGCGCCTGCTTTGATGGGAACTGGTAT
AGACAATGACCAGTGGCTGGGTCAGTGGGATGTCTCTCTGTGCGCACAGAGGCTTATCAA
ATGACACTAAAAATAAGTTCAACAACCATCACACTGGAAGGGAGAAGGCGGACATTGCAT
GTTTGGCGGGCATGTGAGTGCACGAGACGGAAACAGCGGTGGGGAGCAGCCGGTGTAATT
GCCCCCATTGTGCTCGCAATGGAAATTTCAAAGGACGCAGTGATTCGGATGGTTGGTGTC
CGGATTTGTGGCACTGCTCCAAGAAGCCTTACTCACGCACCGATTTTTCTATATAGCTCT
CTATAGATATAGCCATGTGTATCCTCTCGCTTGAATCCTTGGCTCAAGTTTATTTATATC
ACTGGCTGGCTGGATCCACAGTCATGTGTTTACCTATTCATAAATAAAATTTTACCTGTG
AAAAAAAAAAAATTTTCTTTAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-279, - strand, RNAz p=0.778164

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-279, - strand, RNAz p=0.778164

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1164, gnl|bosTau2|chr6 (52508285-52507122)
               

               
               3-1164, gnl|Hg17|chr4 (81185018-81183881)
               

               
               3-1164, gnl|Mm7|chr5 (97099155-97098014)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1164, gnl|bosTau2|chr6 (52508285-52507122)
               

               
               3-1164, gnl|Hg17|chr4 (81185018-81183881)
               

               
               3-1164, gnl|Mm7|chr5 (97099155-97098014)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               bla (0.497389)
               

               
               cst (0.420109)
               

               
               sto (0.359648)
               

               
               che (0.272628)
               

               
               ese (0.253004)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.497389)
               

               
               cst (0.420109)
               

               
               sto (0.359648)
               

               
               che (0.272628)
               

               
               ese (0.253004)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	3-1164, gnl\|bosTau2\|chr6 (52508285-52507122)
	3-1164, gnl\|Hg17\|chr4 (81185018-81183881)
	3-1164, gnl\|Mm7\|chr5 (97099155-97098014)

	bla (0.497389)
	cst (0.420109)
	sto (0.359648)
	che (0.272628)
	ese (0.253004)
	fty (0.17584)
	cut (0.169924)
	lun (0.150489)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	cly (0.120642)
	jej (0.0989218)
	eje (0.0988338)