Non-Coding RNA Search

Ss1.1-Pig4-TMW8060J07.3

Sequence:


               
               TCACCAGTGCTAGACGCGAAGCGGTCCTTCCTGTGCCGAGAGTCGCTGAGTGGCCAGGCC
GCGGGCCGGCCTTTGGTTGCCTCCGTAGGCCTCAATGTTCCTGCTTCTGTTCGTTATTCG
CACACGGATATCAGAGTGCCTGACTTCTCTGACTATCGTCGCGCTGAAGTGTTAGATAGT
ACAAAGTCCTCAAAAGAGAGCAGTGATGCTAGAAAAGGTTTCTCCTATTTGATAACTGCA
ACGACTACTGTGGGTGTTGCATATGCTGCCAAGAATGCCGTCTCCCAGTTTGTTTCCAGC
ATGAGTGCTTCTGCTGATGTGTTGGCCATGTCGAAAATTGAAATCAAGTTATCTGATATT
CCAGAGGGCAAGAACATGGCTTTCAAATGGAGAGGCAAACCTCTGTTTGTGCGTCACAGA
ACCAAGAAGGAAATTGACCAGGAGGCTGCAGTTGAAGTGTCCCAGTTGAGGGACCCACAG
CATGATTTAGAACGAGTTAAGAAACCTGAATGGGTTATCTTGATAGGTGTTTGTACTCAT
CTTGGTTGTGTGCCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCCTGCCAT
GGGTCACACTATGATGCATCTGGCAGGATCAGGAAGGGGCCTGCACCTCTCAACCTTGAA
GTACCCACATATGAGTTCACCAGTGATGATTTAGTAATTGTTGGTTAGAGACCTGGACTC
AAGTCATAGGCTTCTTTCAGTCTTTGTCTCACCGCAGAAGAGTTATTTGAGAACAAACCT
TCTGTTCTTAGAGTTAGTCGACTTGAAATATTTAAGAATTGCTGATAATGTATTTGCAAA
CATGTGAAGTAAATTGAATATGTTGCAAACTTTCAAGCATTCACCTAATAAAACCACTCT
TAAACATTGTTATGCTCAGAGATGTCAGAGGTGCAGTGTCTTTGATAGCTAGTTCTAATT
AAAAACTTTAGACCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCAGTGCTAGACGCGAAGCGGTCCTTCCTGTGCCGAGAGTCGCTGAGTGGCCAGGCC
GCGGGCCGGCCTTTGGTTGCCTCCGTAGGCCTCAATGTTCCTGCTTCTGTTCGTTATTCG
CACACGGATATCAGAGTGCCTGACTTCTCTGACTATCGTCGCGCTGAAGTGTTAGATAGT
ACAAAGTCCTCAAAAGAGAGCAGTGATGCTAGAAAAGGTTTCTCCTATTTGATAACTGCA
ACGACTACTGTGGGTGTTGCATATGCTGCCAAGAATGCCGTCTCCCAGTTTGTTTCCAGC
ATGAGTGCTTCTGCTGATGTGTTGGCCATGTCGAAAATTGAAATCAAGTTATCTGATATT
CCAGAGGGCAAGAACATGGCTTTCAAATGGAGAGGCAAACCTCTGTTTGTGCGTCACAGA
ACCAAGAAGGAAATTGACCAGGAGGCTGCAGTTGAAGTGTCCCAGTTGAGGGACCCACAG
CATGATTTAGAACGAGTTAAGAAACCTGAATGGGTTATCTTGATAGGTGTTTGTACTCAT
CTTGGTTGTGTGCCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCCTGCCAT
GGGTCACACTATGATGCATCTGGCAGGATCAGGAAGGGGCCTGCACCTCTCAACCTTGAA
GTACCCACATATGAGTTCACCAGTGATGATTTAGTAATTGTTGGTTAGAGACCTGGACTC
AAGTCATAGGCTTCTTTCAGTCTTTGTCTCACCGCAGAAGAGTTATTTGAGAACAAACCT
TCTGTTCTTAGAGTTAGTCGACTTGAAATATTTAAGAATTGCTGATAATGTATTTGCAAA
CATGTGAAGTAAATTGAATATGTTGCAAACTTTCAAGCATTCACCTAATAAAACCACTCT
TAAACATTGTTATGCTCAGAGATGTCAGAGGTGCAGTGTCTTTGATAGCTAGTTCTAATT
AAAAACTTTAGACCAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q69BI8_NYCCO

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q69BI8_NYCCO

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               429-628, + strand, RNAz p=0.925756

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-628, + strand, RNAz p=0.925756

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               1-918, gnl|bosTau2|chr18 (19215-20129)
               

               
               1-918, gnl|Hg17|chr22 (38595912-38596829)
               

               
               1-918, gnl|Mm7|chr13 (29910677-29906065)
               


               
               190-438, gnl|bosTau2|chr17 (15385539-15385786)
               

               
               190-438, gnl|Hg17|chr7 (137843902-137844150)
               

               
               190-438, gnl|Mm7|chr13 (29906796-29906548)
               


               
               726-835, gnl|bosTau2|chr12 (30346690-30346583)
               

               
               726-835, gnl|Hg17|chr7 (137845086-137845181)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-918, gnl|bosTau2|chr18 (19215-20129)
               

               
               1-918, gnl|Hg17|chr22 (38595912-38596829)
               

               
               1-918, gnl|Mm7|chr13 (29910677-29906065)
               


               
               190-438, gnl|bosTau2|chr17 (15385539-15385786)
               

               
               190-438, gnl|Hg17|chr7 (137843902-137844150)
               

               
               190-438, gnl|Mm7|chr13 (29906796-29906548)
               


               
               726-835, gnl|bosTau2|chr12 (30346690-30346583)
               

               
               726-835, gnl|Hg17|chr7 (137845086-137845181)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

Help | Less info


               
               sto (1.07894)
               

               
               nms (0.855432)
               

               
               tbr (0.770891)
               

               
               ste (0.676041)
               

               
               vin (0.665115)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               hlv (0.557025)
               

               
               ssp (0.542079)
               

               
               cmu (0.372787)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (1.07894)
               

               
               nms (0.855432)
               

               
               tbr (0.770891)
               

               
               ste (0.676041)
               

               
               vin (0.665115)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               hlv (0.557025)
               

               
               ssp (0.542079)
               

               
               cmu (0.372787)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-918, gnl\|bosTau2\|chr18 (19215-20129)
	1-918, gnl\|Hg17\|chr22 (38595912-38596829)
	1-918, gnl\|Mm7\|chr13 (29910677-29906065)

	190-438, gnl\|bosTau2\|chr17 (15385539-15385786)
	190-438, gnl\|Hg17\|chr7 (137843902-137844150)
	190-438, gnl\|Mm7\|chr13 (29906796-29906548)

	726-835, gnl\|bosTau2\|chr12 (30346690-30346583)
	726-835, gnl\|Hg17\|chr7 (137845086-137845181)

	sto (1.07894)
	nms (0.855432)
	tbr (0.770891)
	ste (0.676041)
	vin (0.665115)
	sme (0.610874)
	isp (0.601504)
	fcc (0.593354)
	hlv (0.557025)
	ssp (0.542079)
	cmu (0.372787)
	fbs (0.350693)
	fco (0.314416)
	bfe (0.299715)
	ldo (0.291008)
	che (0.272628)
	spc (0.226732)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	nbm (0.198649)
	ton (0.1755)
	mga (0.160205)
	fat (0.147427)
	cst (0.140036)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	med (0.116252)