Non-Coding RNA Search

Ss1.1-Pig4-TMW8060J17.5

Sequence:


               
               GCCCCCGCCGGCGGCTACTTAAGGCAGAGGGGCGGCGGCGGGCAGCAGCTGCGCTTCGGC
TGCTCTGGGAAGAGTGGAAGGGGCAAAAATCCCGATCATGATCCCCCACAGGCTGCTGCC
GCCACTGCTGCTAACTCTGTTGCTCGCTGCCCGCCCAGGAGGCGCCCTGGCACAGTGCCC
GGGCTGTGGGCAGGGGGTGCAGACGGGTTGTCCAGGGGGCTGCGCGGAGGAGGAGGACGG
GGGACCGCCAACGGAGGGCTGTGCGGAAGCTGGGGGCTGTCTCAGGAGGGAAGGGCAGCA
GTGCGGGGTCTACACTCCTAACTGCGCTCCAGGACTGCAGTGCCAGCCGCCGGAGGAAGA
TCAGGCGCCTTTGCGGGCGCTGCTGCTGGGCCGGGGCCGCTGTCGCCGGGCTCGCACGCC
CTCGGGGGAGAATCCTAAGGAGAGTAAGCCCCAAGCAGGGACCACGCGCTCGCAGGACGT
GAACCGCAGGGACCCACAGAAGAGTCCGGGGACCTCTACCACTCCCTCCCGGCCCAATCC
TGGGGGCGTCCAAGACACTGAGATGGGCCCTTGCCGCAGACATCTGGACTCAGTGCTGCA
GCAACTCCAGACCGAGGTCTTCCGAGGGGCCCACACCCTCTACGTGCCTAATTGTGACCA
CCGGGGCTTCTATCGGAAGCGGCAGTGCCGCTCCTCCCAGGGACAGCGCCGAGGTCCCTG
CTGGTGTGTGGATCGGATGGGCCAGCCCCTGGCCGGGTCCCCAGATGGTGATGGAAACGC
CCCCTGCCCCTCCGGGAGCAGCGGCTAAGGCTGGGTGGGAGGCTGCAGGGCCACCGGCAG
GAGCGTGGGGCCATCATCTTGGGTTATTTGTTGAGTGATGAGTAACTCGGAGGCCCAGCA
CTCTACCTTCTGGCCCTGCCACATTGTCCCCCTCACCCCAGGACCTCACGCATGGAAAGA
TTGTTGGTGTTGGCGTGGGGTATTAATAAAGCCGTGTTGGGGTCTCTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCCGCCGGCGGCTACTTAAGGCAGAGGGGCGGCGGCGGGCAGCAGCTGCGCTTCGGC
TGCTCTGGGAAGAGTGGAAGGGGCAAAAATCCCGATCATGATCCCCCACAGGCTGCTGCC
GCCACTGCTGCTAACTCTGTTGCTCGCTGCCCGCCCAGGAGGCGCCCTGGCACAGTGCCC
GGGCTGTGGGCAGGGGGTGCAGACGGGTTGTCCAGGGGGCTGCGCGGAGGAGGAGGACGG
GGGACCGCCAACGGAGGGCTGTGCGGAAGCTGGGGGCTGTCTCAGGAGGGAAGGGCAGCA
GTGCGGGGTCTACACTCCTAACTGCGCTCCAGGACTGCAGTGCCAGCCGCCGGAGGAAGA
TCAGGCGCCTTTGCGGGCGCTGCTGCTGGGCCGGGGCCGCTGTCGCCGGGCTCGCACGCC
CTCGGGGGAGAATCCTAAGGAGAGTAAGCCCCAAGCAGGGACCACGCGCTCGCAGGACGT
GAACCGCAGGGACCCACAGAAGAGTCCGGGGACCTCTACCACTCCCTCCCGGCCCAATCC
TGGGGGCGTCCAAGACACTGAGATGGGCCCTTGCCGCAGACATCTGGACTCAGTGCTGCA
GCAACTCCAGACCGAGGTCTTCCGAGGGGCCCACACCCTCTACGTGCCTAATTGTGACCA
CCGGGGCTTCTATCGGAAGCGGCAGTGCCGCTCCTCCCAGGGACAGCGCCGAGGTCCCTG
CTGGTGTGTGGATCGGATGGGCCAGCCCCTGGCCGGGTCCCCAGATGGTGATGGAAACGC
CCCCTGCCCCTCCGGGAGCAGCGGCTAAGGCTGGGTGGGAGGCTGCAGGGCCACCGGCAG
GAGCGTGGGGCCATCATCTTGGGTTATTTGTTGAGTGATGAGTAACTCGGAGGCCCAGCA
CTCTACCTTCTGGCCCTGCCACATTGTCCCCCTCACCCCAGGACCTCACGCATGGAAAGA
TTGTTGGTGTTGGCGTGGGGTATTAATAAAGCCGTGTTGGGGTCTCTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|28630915|gb|AAO45612.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|28630915|gb|AAO45612.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-430, gnl|bosTau2|chr5 (20535846-20536275)
               

               
               1-430, gnl|Hg17|chr12 (51777671-51778107)
               

               
               1-430, gnl|Mm7|chr15 (102130617-102131046)
               


               
               683-1007, gnl|bosTau2|chr5 (20539428-20539740)
               

               
               683-1007, gnl|Hg17|chr12 (51782093-51782392)
               

               
               683-1007, gnl|Mm7|chr15 (102135334-102135661)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-430, gnl|bosTau2|chr5 (20535846-20536275)
               

               
               1-430, gnl|Hg17|chr12 (51777671-51778107)
               

               
               1-430, gnl|Mm7|chr15 (102130617-102131046)
               


               
               683-1007, gnl|bosTau2|chr5 (20539428-20539740)
               

               
               683-1007, gnl|Hg17|chr12 (51782093-51782392)
               

               
               683-1007, gnl|Mm7|chr15 (102135334-102135661)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               jca (1.7094)
               

               
               cga (0.558191)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (1.7094)
               

               
               cga (0.558191)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	1-430, gnl\|bosTau2\|chr5 (20535846-20536275)
	1-430, gnl\|Hg17\|chr12 (51777671-51778107)
	1-430, gnl\|Mm7\|chr15 (102130617-102131046)

	683-1007, gnl\|bosTau2\|chr5 (20539428-20539740)
	683-1007, gnl\|Hg17\|chr12 (51782093-51782392)
	683-1007, gnl\|Mm7\|chr15 (102135334-102135661)

	jca (1.7094)
	cga (0.558191)
	nca (0.273748)
	cov (0.264306)
	eep (0.245128)
	cly (0.241284)
	eru (0.240096)
	med (0.232504)
	mas (0.210305)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	eye (0.170503)
	nco (0.161734)
	pla (0.133672)
	ese (0.126502)