Non-Coding RNA Search

Ss1.1-Pig4-TMW8060J19.3

Sequence:


               
               AGAATCGCCTCGGGTCCGGCCGCGAAGATGGCGTCCTCCGCGTCTGCTCGGCCTTCGGCC
GGGAAGCGAGTGGTGAATCAGGACGAATTGCGGAGGTTGATGAAAGAGAAGCAGCGTCTG
AGCACCAACCGAAAACGGATAGAATCTCCATTCGCGAAGTACAACCGTTTGGGGCAGCTG
AGTTGTGCCCTGTGTAACACCCCGGTTAAGAGCGAGCTCCTGTGGCAGACTCACGTCCTC
GGAAAGCAGCACCGAGAGAAAGTGGCCGAGCTGAAAGGCGCGAAGGAGGCCACCCAGGGT
CCGTCCGCCAAGAGGAAGGCACCAGATGCAGAGAGCCAAGATGCCAAAAGAGTGAAGGCC
TCTCCGGTGCCTCAGGTACAGCCCTCCACTTCCGCCTTGCCCACCAACTTTGACAAAACC
GGAAAGGAATCCACTAGAACGACCCTCAGTAAGTCTTCGGGACTCGGTTTACTCCCTGAT
TATGAAGATGAGGAAGAGGAGGAGGAGGAAGAGGGGCAGGGAGGAGGAGGAGAAGGGAAG
AAAGGGGATGCCAGTAAGCAGCCGTCCAACGTACCGAGCAAGGAACACTCACTTCCCTCC
TCGCGGGAGGCAAGTGGTAGTCGGCTGCCAAGCGGCTTTTCAGATACAAATCCTCCCAAG
GCCCCTTTAATTCCTCATTCGGGGTCAATTGAGAAAGCAGAGATACATGAAAAAGTAGTG
GAAAGGAGAGAAAACACTGCCGAAGCATTACCGGAAGGGTTTTTTGACGACCCTGAGATA
GATGCGAGGGTACGAAAGGTTGACGCCCCAAAGGATCAGATGGACAAAGAGTGGGACGAA
TTTCAAAAAGCCATGAGACAGGTGAACACTATTTCCGAAGCCATAGTTGCTGAAGAGGAT
GAGGAGGGACGGTTGGACCGGCAGATTGGAGAGATCGATGAGCAGATAGAGTGCTACCGT
CGGGTGGAAAAGCTGCGGAATCGCCAGGATGAAATAAAAAATAAGCTTAAAGAGGTGCTG
ACCATTAAAGAATTGCAGAAAAAGGAAGAGGAGAATGTTGACAGCGATGATGAGGGAGAG
CTACAGGATTTATTGTCTCAGGATTGGCGGGTGAAAGGGGCTTTGTTATAGGATTTCACA
GACGCAAGATTTCTACACCCTCTACGATTGTATAAAAAGTGCCGTCTCTCAATGTAACGT
TTACTCCATGCCTAGAGATTTGGTGACCTAACTGGGTTGTTGAGATACAAGGAGCCTGTG
AAGATACCGCTTTGGAAAACTGGTGTAAAATATTTTTGAGGTAAAAGTGTTTTTGAAGTT
TTTAAAGTATTATATACTAAAACGCCCACTTTTTCACACACAGATCTAAAGTTTGAGTTG
TAAAAGCTGTAAGCTGTAGATACTGTACATAGTTAAATATATATTTACTTAATTCTGCTT
TGAAGTTTGTAAATTAATAGAAGTCAGACCAATGGACAAGCTTTTAGATGAAAACCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCGCCTCGGGTCCGGCCGCGAAGATGGCGTCCTCCGCGTCTGCTCGGCCTTCGGCC
GGGAAGCGAGTGGTGAATCAGGACGAATTGCGGAGGTTGATGAAAGAGAAGCAGCGTCTG
AGCACCAACCGAAAACGGATAGAATCTCCATTCGCGAAGTACAACCGTTTGGGGCAGCTG
AGTTGTGCCCTGTGTAACACCCCGGTTAAGAGCGAGCTCCTGTGGCAGACTCACGTCCTC
GGAAAGCAGCACCGAGAGAAAGTGGCCGAGCTGAAAGGCGCGAAGGAGGCCACCCAGGGT
CCGTCCGCCAAGAGGAAGGCACCAGATGCAGAGAGCCAAGATGCCAAAAGAGTGAAGGCC
TCTCCGGTGCCTCAGGTACAGCCCTCCACTTCCGCCTTGCCCACCAACTTTGACAAAACC
GGAAAGGAATCCACTAGAACGACCCTCAGTAAGTCTTCGGGACTCGGTTTACTCCCTGAT
TATGAAGATGAGGAAGAGGAGGAGGAGGAAGAGGGGCAGGGAGGAGGAGGAGAAGGGAAG
AAAGGGGATGCCAGTAAGCAGCCGTCCAACGTACCGAGCAAGGAACACTCACTTCCCTCC
TCGCGGGAGGCAAGTGGTAGTCGGCTGCCAAGCGGCTTTTCAGATACAAATCCTCCCAAG
GCCCCTTTAATTCCTCATTCGGGGTCAATTGAGAAAGCAGAGATACATGAAAAAGTAGTG
GAAAGGAGAGAAAACACTGCCGAAGCATTACCGGAAGGGTTTTTTGACGACCCTGAGATA
GATGCGAGGGTACGAAAGGTTGACGCCCCAAAGGATCAGATGGACAAAGAGTGGGACGAA
TTTCAAAAAGCCATGAGACAGGTGAACACTATTTCCGAAGCCATAGTTGCTGAAGAGGAT
GAGGAGGGACGGTTGGACCGGCAGATTGGAGAGATCGATGAGCAGATAGAGTGCTACCGT
CGGGTGGAAAAGCTGCGGAATCGCCAGGATGAAATAAAAAATAAGCTTAAAGAGGTGCTG
ACCATTAAAGAATTGCAGAAAAAGGAAGAGGAGAATGTTGACAGCGATGATGAGGGAGAG
CTACAGGATTTATTGTCTCAGGATTGGCGGGTGAAAGGGGCTTTGTTATAGGATTTCACA
GACGCAAGATTTCTACACCCTCTACGATTGTATAAAAAGTGCCGTCTCTCAATGTAACGT
TTACTCCATGCCTAGAGATTTGGTGACCTAACTGGGTTGTTGAGATACAAGGAGCCTGTG
AAGATACCGCTTTGGAAAACTGGTGTAAAATATTTTTGAGGTAAAAGTGTTTTTGAAGTT
TTTAAAGTATTATATACTAAAACGCCCACTTTTTCACACACAGATCTAAAGTTTGAGTTG
TAAAAGCTGTAAGCTGTAGATACTGTACATAGTTAAATATATATTTACTTAATTCTGCTT
TGAAGTTTGTAAATTAATAGAAGTCAGACCAATGGACAAGCTTTTAGATGAAAACCAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96NB3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96NB3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               699-818, + strand, RNAz p=0.776331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               699-818, + strand, RNAz p=0.776331

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1498, gnl|bosTau2|chr19 (8856694-8858192)
               

               
               1-1498, gnl|Hg17|chr17 (30312672-30314191)
               

               
               1-1498, gnl|Mm7|chr11 (82845920-82847409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1498, gnl|bosTau2|chr19 (8856694-8858192)
               

               
               1-1498, gnl|Hg17|chr17 (30312672-30314191)
               

               
               1-1498, gnl|Mm7|chr11 (82845920-82847409)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cut (0.339847)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-1498, gnl\|bosTau2\|chr19 (8856694-8858192)
	1-1498, gnl\|Hg17\|chr17 (30312672-30314191)
	1-1498, gnl\|Mm7\|chr11 (82845920-82847409)

	cut (0.339847)
	mgp (0.230681)
	nms (0.213858)
	aor (0.195274)
	cmu (0.186393)
	sto (0.179824)
	fat (0.147427)
	pty (0.142714)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)