Ss1.1-Pig4-TMW8060K02.5
|
GACCGAAGATCTCCCCTTCGAGCCCGCAGCGGGCACCCGCTTCTTCTGCACCGCGAGCCG
CGGCCTGGAGCCCTTCCTGCTGCGGGAGGTGCGGACGCGGCTGAGGGCCACGCAGGTGAG
TCGGCATCGACGCGTGCCCGGGCAGGAAGCAAGGCACCTCCCCGCCGGGTCCGTCTCAGA
TCCCGGAAAATGACGCGAAGAACCGCGCGCTCGGCTTCCGAACCCACCGAGGCGACGTCC
CAGCCCTCGGAGTTCTACTGGCGTATAAATATCCAATGTGCTGTAGTATATAGTGTGTAG
CGTACTTTAAGCAAATATATTGGGTAAAATTAAGCTTTATTTTGTAATAATGTTTAATAT
ACTAAACACTGCTACTTATTATAATAAAGGTAGGAACAGTAATTTTTAAGATACAATTCA
ACATACTAGAGGTGTCCCTAATGCCAGCTGGACAGAGGCCCTGTCTGATTAGTTGACCTT
TATCAACCCATCTAGAAAAGATAACATTAACTCAAGTCCTGATAAGCCACCCAATTTTTA
CTTTTTAGTGGGTCATGATGATAGAGGGTAGTGGGGTTCAGCTAGGAAGATAGTCACGTT
CTTAGTTATTTAATGGGATGACTGCATAAGAGTTTATTGGGGGTTTTTTTGTTTTGTTTT
TTGAAGATTCTCTGCTCCTCGTAGACTGGATACCTTTTTAAGAATTAAAATATATTTTTT
AATTCTCCTAAAATGAACCAAAAAAGCTCACACACCACCTCAACCCTTCACTTAGCACTT
TAAAATTAATTCCGAAATTAAATGGCATCCGTAGAATAAGGAAAAATTCGGTATCTCCTT
ATGTTACTATACATTACGATTTTGCCTGGGCTTAAGCTTTTCATCTTTGTGTTACACTTG
AATACCTGAACTTTAAAAGAAAGGCAAAATGCTAACTGCTTAGACATGTTAGCGGATAAT
AAAGCTGTTTTTACTTTAATAAAGGCTGTTATTTTATCTTCTGAAGTGTTAGACATAAAA
TCAGCTGGCTTTAGACACTTTGTTATGGTTTAATTCCAAATGGAAAAAGCATATTGTATA
TATAAATAAATTTTCAAGTAATAAATTCTAGGATGAAATATTCTAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GACCGAAGATCTCCCCTTCGAGCCCGCAGCGGGCACCCGCTTCTTCTGCACCGCGAGCCG
CGGCCTGGAGCCCTTCCTGCTGCGGGAGGTGCGGACGCGGCTGAGGGCCACGCAGGTGAG
TCGGCATCGACGCGTGCCCGGGCAGGAAGCAAGGCACCTCCCCGCCGGGTCCGTCTCAGA
TCCCGGAAAATGACGCGAAGAACCGCGCGCTCGGCTTCCGAACCCACCGAGGCGACGTCC
CAGCCCTCGGAGTTCTACTGGCGTATAAATATCCAATGTGCTGTAGTATATAGTGTGTAG
CGTACTTTAAGCAAATATATTGGGTAAAATTAAGCTTTATTTTGTAATAATGTTTAATAT
ACTAAACACTGCTACTTATTATAATAAAGGTAGGAACAGTAATTTTTAAGATACAATTCA
ACATACTAGAGGTGTCCCTAATGCCAGCTGGACAGAGGCCCTGTCTGATTAGTTGACCTT
TATCAACCCATCTAGAAAAGATAACATTAACTCAAGTCCTGATAAGCCACCCAATTTTTA
CTTTTTAGTGGGTCATGATGATAGAGGGTAGTGGGGTTCAGCTAGGAAGATAGTCACGTT
CTTAGTTATTTAATGGGATGACTGCATAAGAGTTTATTGGGGGTTTTTTTGTTTTGTTTT
TTGAAGATTCTCTGCTCCTCGTAGACTGGATACCTTTTTAAGAATTAAAATATATTTTTT
AATTCTCCTAAAATGAACCAAAAAAGCTCACACACCACCTCAACCCTTCACTTAGCACTT
TAAAATTAATTCCGAAATTAAATGGCATCCGTAGAATAAGGAAAAATTCGGTATCTCCTT
ATGTTACTATACATTACGATTTTGCCTGGGCTTAAGCTTTTCATCTTTGTGTTACACTTG
AATACCTGAACTTTAAAAGAAAGGCAAAATGCTAACTGCTTAGACATGTTAGCGGATAAT
AAAGCTGTTTTTACTTTAATAAAGGCTGTTATTTTATCTTCTGAAGTGTTAGACATAAAA
TCAGCTGGCTTTAGACACTTTGTTATGGTTTAATTCCAAATGGAAAAAGCATATTGTATA
TATAAATAAATTTTCAAGTAATAAATTCTAGGATGAAATATTCTAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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3-155, gnl|bosTau2|chr11 (17064144-17063992) |
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3-155, gnl|canFam2|chr17 (34842853-34843105) |
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3-155, gnl|dasNov1|scaffold_27152 (40178-39963) |
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3-155, gnl|galGal2|chr3 (13062968-13063191) |
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3-155, gnl|hg17|chr2 (39917821-39918061) |
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3-155, gnl|Hg17|chr2 (39918017-39917869) |
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3-155, gnl|mm7|chr17 (79361968-79362207) |
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3-155, gnl|Mm7|chr17 (79362166-79362024) |
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3-155, gnl|monDom2|scaffold_23 (43383724-43384027) |
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3-155, gnl|oryCun1|scaffold_191289 (110686-110901) |
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3-155, gnl|panTro1|chr12 (41416582-41416822) |
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3-155, gnl|rheMac2|chr13 (39768180-39768425) |
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3-155, gnl|rn3|chr6 (4026663-4026900) |
| |
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261-499, gnl|bosTau2|chr11 (17062534-17062293) |
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261-499, gnl|Hg17|chr2 (39915005-39914764) |
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261-499, gnl|Mm7|chr17 (79355927-79355725) |
| |
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665-1128, gnl|bosTau2|chr11 (17062209-17061736) |
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665-1128, gnl|Hg17|chr2 (39914591-39913536) |
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665-1128, gnl|Mm7|chr17 (79355587-79355175) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-155, gnl|bosTau2|chr11 (17064144-17063992) |
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3-155, gnl|canFam2|chr17 (34842853-34843105) |
|
3-155, gnl|dasNov1|scaffold_27152 (40178-39963) |
|
3-155, gnl|galGal2|chr3 (13062968-13063191) |
|
3-155, gnl|hg17|chr2 (39917821-39918061) |
|
3-155, gnl|Hg17|chr2 (39918017-39917869) |
|
3-155, gnl|mm7|chr17 (79361968-79362207) |
|
3-155, gnl|Mm7|chr17 (79362166-79362024) |
|
3-155, gnl|monDom2|scaffold_23 (43383724-43384027) |
|
3-155, gnl|oryCun1|scaffold_191289 (110686-110901) |
|
3-155, gnl|panTro1|chr12 (41416582-41416822) |
|
3-155, gnl|rheMac2|chr13 (39768180-39768425) |
|
3-155, gnl|rn3|chr6 (4026663-4026900) |
| |
|
261-499, gnl|bosTau2|chr11 (17062534-17062293) |
|
261-499, gnl|Hg17|chr2 (39915005-39914764) |
|
261-499, gnl|Mm7|chr17 (79355927-79355725) |
| |
|
665-1128, gnl|bosTau2|chr11 (17062209-17061736) |
|
665-1128, gnl|Hg17|chr2 (39914591-39913536) |
|
665-1128, gnl|Mm7|chr17 (79355587-79355175) |
|
lin (0.291206) |
|
duo (0.172801) |
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nje (0.16592) |
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eli (0.151814) |
|
fat (0.147427) |
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lnt (0.142308) |
|
thg (0.126791) |
|
tra (0.123092) |
|
lin (0.291206) |
|
duo (0.172801) |
|
nje (0.16592) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
thg (0.126791) |
|
tra (0.123092) |
