Ss1.1-Pig4-TMW8060K03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAACGTC AACGATTCTGTTACCAAACAGAAGTTTGATAACTTGTACTGCTGCCGAGAATCCATTTTG GATGGCCTGAAGAGGACCACAGATGTGATGTTTGGTGGGAAACAAGTGGTGGTGTGTGGC TACGGCGAGGTGGGAAAGGGCTGCTGTGCTGCTCTCAAGGCCCTTGGAGCAATTGTCTAT ATCACAGAAATTGACCCCATCTGTGCTCTGCAGGCCTGCATGGATGGTTTCAGAGTGGTA AAGCTAAATGAAGTTATCCGGCAAGTTGATGTCGTAATAACTTGCACGGGAAATAAGAAT GTGGTGACACGGGAGCATTTGGATCGCATGAAAAACAGTTGTATCGTGTGCAATATGGGC CACTCAAACACGGAAATTGATGTGACCAGCCTTCGAACTCCGGAGCTGACGTGGGAGCGA GTTCGTTCTCAGGTGGATCATGTCATCTGGCCAGACGGCAAGCGCGTCGTCCTTCTGGCA GAGGGTCGTCTGCTCAATCTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCACA GCTACGACACAGGCTTTGGCACTGATAGAGCTCTATAATGCGCCTGAGGGACGATACAAA CAAGACGTGTACTTGCTTCCTAAGAAAATGGATGAGTACGTGGCCAGCTTGCACCTGCCA TCATTTGATGCCCACCTGACCGAGCTGACAGATGACCAAGCAAAGTATCTGGGACTCAAC AAAAATGGGCCATTCAAACCCAATTATTACAGATACTAACGGACCAGATTACCAAGGACC AGTCCACCTGAACCACACGACTCTAAAAGAAATATTTTTAAGATAACTTTTATTTTCTCC TTAATCTTTTCCTCTTGATTTTTTTTTTTTCCTGTAATTTCTTTCTTGTTTTTTCATCTC ATTGTCCAAGTTCTTGCAGACCACACAGGAACTTGCTTCATGACTCTTTAGATGAAACTG AGATTCAAGGTTTCTCACCCTAGTGACTAAAGAAAGATTTTACTCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAACGTC AACGATTCTGTTACCAAACAGAAGTTTGATAACTTGTACTGCTGCCGAGAATCCATTTTG GATGGCCTGAAGAGGACCACAGATGTGATGTTTGGTGGGAAACAAGTGGTGGTGTGTGGC TACGGCGAGGTGGGAAAGGGCTGCTGTGCTGCTCTCAAGGCCCTTGGAGCAATTGTCTAT ATCACAGAAATTGACCCCATCTGTGCTCTGCAGGCCTGCATGGATGGTTTCAGAGTGGTA AAGCTAAATGAAGTTATCCGGCAAGTTGATGTCGTAATAACTTGCACGGGAAATAAGAAT GTGGTGACACGGGAGCATTTGGATCGCATGAAAAACAGTTGTATCGTGTGCAATATGGGC CACTCAAACACGGAAATTGATGTGACCAGCCTTCGAACTCCGGAGCTGACGTGGGAGCGA GTTCGTTCTCAGGTGGATCATGTCATCTGGCCAGACGGCAAGCGCGTCGTCCTTCTGGCA GAGGGTCGTCTGCTCAATCTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCACA GCTACGACACAGGCTTTGGCACTGATAGAGCTCTATAATGCGCCTGAGGGACGATACAAA CAAGACGTGTACTTGCTTCCTAAGAAAATGGATGAGTACGTGGCCAGCTTGCACCTGCCA TCATTTGATGCCCACCTGACCGAGCTGACAGATGACCAAGCAAAGTATCTGGGACTCAAC AAAAATGGGCCATTCAAACCCAATTATTACAGATACTAACGGACCAGATTACCAAGGACC AGTCCACCTGAACCACACGACTCTAAAAGAAATATTTTTAAGATAACTTTTATTTTCTCC TTAATCTTTTCCTCTTGATTTTTTTTTTTTCCTGTAATTTCTTTCTTGTTTTTTCATCTC ATTGTCCAAGTTCTTGCAGACCACACAGGAACTTGCTTCATGACTCTTTAGATGAAACTG AGATTCAAGGTTTCTCACCCTAGTGACTAAAGAAAGATTTTACTCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 161-280, - strand, RNAz p=0.56214 | |
| 934-1065, - strand, RNAz p=0.963194 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 161-280, - strand, RNAz p=0.56214 | |
| 934-1065, - strand, RNAz p=0.963194 |
| Aligned organism(s): 101 entry(ies) | More info |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
| 82-295, gnl|bosTau2|chr13 (47716375-47716588) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662487) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662484) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662484) | |
| 82-295, gnl|canFam2|chr32 (4662686-4662485) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531307) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531310) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531310) | |
| 82-295, gnl|danRer3|chr13 (11531107-11531309) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-562) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-548) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-548) | |
| 82-295, gnl|dasNov1|scaffold_30854 (363-554) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77855) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77858) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77858) | |
| 82-295, gnl|echTel1|scaffold_284529 (77656-77857) | |
| 82-295, gnl|fr1|chrUn (251058908-251059113) | |
| 82-295, gnl|fr1|chrUn (251058908-251059116) | |
| 82-295, gnl|fr1|chrUn (251058908-251059116) | |
| 82-295, gnl|fr1|chrUn (251058913-251059115) | |
| 82-295, gnl|galGal2|chr20 (1432717-1432922) | |
| 82-295, gnl|galGal2|chr20 (1432718-1432925) | |
| 82-295, gnl|galGal2|chr20 (1432718-1432925) | |
| 82-295, gnl|galGal2|chr20 (1432723-1432924) | |
| 82-295, gnl|hg17|chr10 (47064925-47065133) | |
| 82-295, gnl|hg17|chr11 (85246331-85246538) | |
| 82-295, gnl|hg17|chr15 (48497429-48497635) | |
| 82-295, gnl|Hg17|chr20 (32342402-32342189) | |
| 82-295, gnl|hg17|chr9 (120563071-120563272) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-229) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-226) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-226) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (429-227) | |
| 82-295, gnl|mm7|chr1 (7187068-7187276) | |
| 82-295, gnl|mm7|chr1 (7187068-7187276) | |
| 82-295, gnl|mm7|chr16 (45933377-45933172) | |
| 82-295, gnl|mm7|chr16 (45933371-45933170) | |
| 82-295, gnl|Mm7|chr2 (154805216-154805003) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146431) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146428) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146428) | |
| 82-295, gnl|monDom2|scaffold_251 (146630-146429) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30167) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30170) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30170) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29968-30169) | |
| 82-295, gnl|panTro1|chr11 (105299406-105299607) | |
| 82-295, gnl|panTro1|chr16 (48517458-48517664) | |
| 82-295, gnl|panTro1|chr8 (47764253-47764460) | |
| 82-295, gnl|panTro1|chr9 (86891727-86891930) | |
| 82-295, gnl|rheMac2|chr15 (15288817-15288616) | |
| 82-295, gnl|rheMac2|chr7 (28729825-28730034) | |
| 82-295, gnl|rheMac2|chr9 (49797693-49797901) | |
| 82-295, gnl|rheMac2|chr9 (49944128-49943921) | |
| 82-295, gnl|rn3|chr1 (20840936-20840731) | |
| 82-295, gnl|rn3|chr1 (20840936-20840728) | |
| 82-295, gnl|rn3|chr1 (20840936-20840728) | |
| 82-295, gnl|rn3|chr1 (20840930-20840729) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875269) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875266) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875266) | |
| 82-295, gnl|tetNig1|chrUn_random (11875469-11875267) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441328) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441331) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441331) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441129-1441330) | |
| 444-544, gnl|bosTau2|chr3 (25423218-25423118) | |
| 444-544, gnl|canFam2|chr6 (45010131-45010028) | |
| 444-544, gnl|danRer3|chrUn (128369366-128369263) | |
| 444-544, gnl|dasNov1|scaffold_11345 (6162-6265) | |
| 444-544, gnl|echTel1|scaffold_215178 (7379-7296) | |
| 444-544, gnl|fr1|chrUn (46077009-46076906) | |
| 444-544, gnl|galGal2|chr26 (12701-12804) | |
| 444-544, gnl|hg17|chr1 (110273214-110273317) | |
| 444-544, gnl|Hg17|chr1 (110273215-110273315) | |
| 444-544, gnl|loxAfr1|scaffold_8396 (61230-61333) | |
| 444-544, gnl|mm7|chr3 (107486457-107486354) | |
| 444-544, gnl|Mm7|chr3 (107486454-107486354) | |
| 444-544, gnl|monDom2|scaffold_0 (6389392-6389289) | |
| 444-544, gnl|oryCun1|scaffold_206963 (16118-16221) | |
| 444-544, gnl|panTro1|chr1_random (4944588-4944485) | |
| 444-544, gnl|rheMac2|chr1 (113079002-113079105) | |
| 444-544, gnl|rn3|chr2 (203178695-203178592) | |
| 444-544, gnl|tetNig1|chr11 (5921454-5921557) | |
| 444-544, gnl|xenTro1|scaffold_19 (2497152-2497255) | |
| 807-1065, gnl|bosTau2|chr3 (25420460-25420198) | |
| 807-1065, gnl|canFam2|chr6 (45007100-45006928) | |
| 807-1065, gnl|dasNov1|scaffold_158921 (4329-4499) | |
| 807-1065, gnl|echTel1|scaffold_249279 (6327-6133) | |
| 807-1065, gnl|galGal2|chr26 (15142-15353) | |
| 807-1065, gnl|hg17|chr1 (110276324-110276494) | |
| 807-1065, gnl|Hg17|chr1 (110276332-110276583) | |
| 807-1065, gnl|loxAfr1|scaffold_8396 (64357-64533) | |
| 807-1065, gnl|mm7|chr3 (107483416-107483246) | |
| 807-1065, gnl|Mm7|chr3 (107483407-107483157) | |
| 807-1065, gnl|monDom2|scaffold_0 (6385516-6385338) | |
| 807-1065, gnl|oryCun1|scaffold_206963 (19164-19329) | |
| 807-1065, gnl|panTro1|chr1_random (4941478-4941308) | |
| 807-1065, gnl|rheMac2|chr1 (113082438-113082609) | |
| 807-1065, gnl|rn3|chr2 (203175121-203174953) |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-295, gnl|bosTau2|chr13 (47716375-47716588) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662487) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662484) | |
| 82-295, gnl|canFam2|chr32 (4662692-4662484) | |
| 82-295, gnl|canFam2|chr32 (4662686-4662485) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531307) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531310) | |
| 82-295, gnl|danRer3|chr13 (11531102-11531310) | |
| 82-295, gnl|danRer3|chr13 (11531107-11531309) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-562) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-548) | |
| 82-295, gnl|dasNov1|scaffold_30854 (357-548) | |
| 82-295, gnl|dasNov1|scaffold_30854 (363-554) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77855) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77858) | |
| 82-295, gnl|echTel1|scaffold_284529 (77650-77858) | |
| 82-295, gnl|echTel1|scaffold_284529 (77656-77857) | |
| 82-295, gnl|fr1|chrUn (251058908-251059113) | |
| 82-295, gnl|fr1|chrUn (251058908-251059116) | |
| 82-295, gnl|fr1|chrUn (251058908-251059116) | |
| 82-295, gnl|fr1|chrUn (251058913-251059115) | |
| 82-295, gnl|galGal2|chr20 (1432717-1432922) | |
| 82-295, gnl|galGal2|chr20 (1432718-1432925) | |
| 82-295, gnl|galGal2|chr20 (1432718-1432925) | |
| 82-295, gnl|galGal2|chr20 (1432723-1432924) | |
| 82-295, gnl|hg17|chr10 (47064925-47065133) | |
| 82-295, gnl|hg17|chr11 (85246331-85246538) | |
| 82-295, gnl|hg17|chr15 (48497429-48497635) | |
| 82-295, gnl|Hg17|chr20 (32342402-32342189) | |
| 82-295, gnl|hg17|chr9 (120563071-120563272) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-229) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-226) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (435-226) | |
| 82-295, gnl|loxAfr1|scaffold_136474 (429-227) | |
| 82-295, gnl|mm7|chr1 (7187068-7187276) | |
| 82-295, gnl|mm7|chr1 (7187068-7187276) | |
| 82-295, gnl|mm7|chr16 (45933377-45933172) | |
| 82-295, gnl|mm7|chr16 (45933371-45933170) | |
| 82-295, gnl|Mm7|chr2 (154805216-154805003) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146431) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146428) | |
| 82-295, gnl|monDom2|scaffold_251 (146636-146428) | |
| 82-295, gnl|monDom2|scaffold_251 (146630-146429) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30167) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30170) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29962-30170) | |
| 82-295, gnl|oryCun1|scaffold_199339 (29968-30169) | |
| 82-295, gnl|panTro1|chr11 (105299406-105299607) | |
| 82-295, gnl|panTro1|chr16 (48517458-48517664) | |
| 82-295, gnl|panTro1|chr8 (47764253-47764460) | |
| 82-295, gnl|panTro1|chr9 (86891727-86891930) | |
| 82-295, gnl|rheMac2|chr15 (15288817-15288616) | |
| 82-295, gnl|rheMac2|chr7 (28729825-28730034) | |
| 82-295, gnl|rheMac2|chr9 (49797693-49797901) | |
| 82-295, gnl|rheMac2|chr9 (49944128-49943921) | |
| 82-295, gnl|rn3|chr1 (20840936-20840731) | |
| 82-295, gnl|rn3|chr1 (20840936-20840728) | |
| 82-295, gnl|rn3|chr1 (20840936-20840728) | |
| 82-295, gnl|rn3|chr1 (20840930-20840729) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875269) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875266) | |
| 82-295, gnl|tetNig1|chrUn_random (11875474-11875266) | |
| 82-295, gnl|tetNig1|chrUn_random (11875469-11875267) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441328) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441331) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441123-1441331) | |
| 82-295, gnl|xenTro1|scaffold_35 (1441129-1441330) | |
| 444-544, gnl|bosTau2|chr3 (25423218-25423118) | |
| 444-544, gnl|canFam2|chr6 (45010131-45010028) | |
| 444-544, gnl|danRer3|chrUn (128369366-128369263) | |
| 444-544, gnl|dasNov1|scaffold_11345 (6162-6265) | |
| 444-544, gnl|echTel1|scaffold_215178 (7379-7296) | |
| 444-544, gnl|fr1|chrUn (46077009-46076906) | |
| 444-544, gnl|galGal2|chr26 (12701-12804) | |
| 444-544, gnl|hg17|chr1 (110273214-110273317) | |
| 444-544, gnl|Hg17|chr1 (110273215-110273315) | |
| 444-544, gnl|loxAfr1|scaffold_8396 (61230-61333) | |
| 444-544, gnl|mm7|chr3 (107486457-107486354) | |
| 444-544, gnl|Mm7|chr3 (107486454-107486354) | |
| 444-544, gnl|monDom2|scaffold_0 (6389392-6389289) | |
| 444-544, gnl|oryCun1|scaffold_206963 (16118-16221) | |
| 444-544, gnl|panTro1|chr1_random (4944588-4944485) | |
| 444-544, gnl|rheMac2|chr1 (113079002-113079105) | |
| 444-544, gnl|rn3|chr2 (203178695-203178592) | |
| 444-544, gnl|tetNig1|chr11 (5921454-5921557) | |
| 444-544, gnl|xenTro1|scaffold_19 (2497152-2497255) | |
| 807-1065, gnl|bosTau2|chr3 (25420460-25420198) | |
| 807-1065, gnl|canFam2|chr6 (45007100-45006928) | |
| 807-1065, gnl|dasNov1|scaffold_158921 (4329-4499) | |
| 807-1065, gnl|echTel1|scaffold_249279 (6327-6133) | |
| 807-1065, gnl|galGal2|chr26 (15142-15353) | |
| 807-1065, gnl|hg17|chr1 (110276324-110276494) | |
| 807-1065, gnl|Hg17|chr1 (110276332-110276583) | |
| 807-1065, gnl|loxAfr1|scaffold_8396 (64357-64533) | |
| 807-1065, gnl|mm7|chr3 (107483416-107483246) | |
| 807-1065, gnl|Mm7|chr3 (107483407-107483157) | |
| 807-1065, gnl|monDom2|scaffold_0 (6385516-6385338) | |
| 807-1065, gnl|oryCun1|scaffold_206963 (19164-19329) | |
| 807-1065, gnl|panTro1|chr1_random (4941478-4941308) | |
| 807-1065, gnl|rheMac2|chr1 (113082438-113082609) | |
| 807-1065, gnl|rn3|chr2 (203175121-203174953) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| cbr (0.127975) |