Ss1.1-Pig4-TMW8060K10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGTACCACGTTTTCCGGAGCCGGGCCTCAGGAGACGGCGGGCGGGAAAACCCGGCTC CCGGAAGCTTTTGCTTTCTTTGACGCAAGGGCTCGGGACTCAGCTGCCGTCTGCCGAGCG CCCGGCGAGGAGCGACCCCAGACGGATCCTTCTTAGTCCCTCCGCCCCCCACCTCGCCGG GTCCCGGAGCCTCCGTCCTTCTCGCCGCTCTCCGGGTGGCCATGGAGTGTCCGCACCTCA GCTCCAGCGTCTGCATCGCTCCGGACTCAGCCAAGTTCCCCAACGGCTCCCCGTCGTCCT GGTGCTGCAGCGTGTGCCGGTCCAACAAAAGCCCCTGGGTCTGTTTGACTTGTTCAAGTG TCCACTGTGGAAGGTATGTGAATGGCCATGCAAAAAAACATTATGAAGATGCACAAATAC CTTTAACCAATCATAAGAAATCAGAAAAGCAAGAAAAAGCTCAGCACACAGTGTGTATGG ATTGCAGTAGCTACAGTACATATTGTTATCGCTGTGATGATTTTGTGGTTAATGACACCA AGCTGGGACTGGTACAGAAAGTCAGAGAACACTTACAGAACTTGGAAAACTCAGCTTTCA CAGCTGACAGGCATAGGAAAAGAAAACTTTTGGAAAACTCATCACTAAACAGCAAGTTAT TAAAAGTAAATGGAAGTACCACTGCCATTTGTGCCACAGGTCTTCGAAATTTGGGGAACA CGTGTTTCATGAATGCCATCCTTCAGTCACTCAGTAACATTGAGCAGTTTTGCTGTTATT TCAAAGAACTACCCGCTGTGGAGTTAAGGAATGGGAAGACAGCAGGGAGGCGAACGTACC ACACCAGGAGCCAGGGGGACAACAACGTGTCTTTGGTAGAAGAGTTTAGGAAGACACTCT GTGCTTTATGGCAAGGGAGCCAGACTGCATTTAGCCCGGAATCCTTATTTTATGTTGTTT GGAAGATTATGCCAAATTTTAGGGGCTATCAGCAGCAGGATGCCCATGAATTCATGCGCT ACCTGTTAGACCACCTGCACTTGGAACTCCAGGGCGGTTTCAATGGGATCTCCCGCTCAT CAATTCTGCAAGAGAATTCCACTCTGTCTGCAAGTAACAAATGTTGCATAAATGGAGCAT CTACAGTTGTCACGGCTATATTCGGAGGCATTCTCCAAAATGAGGTTAACTGCCTCATAT GTGGGACAGAATCTAGAAAGTTTGATCCATTCCTAGACCTTTCATTAGATATTCCAAGTC AGTTCAGAAATAAGCGCTCTAAGAATCAAGAAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGTACCACGTTTTCCGGAGCCGGGCCTCAGGAGACGGCGGGCGGGAAAACCCGGCTC CCGGAAGCTTTTGCTTTCTTTGACGCAAGGGCTCGGGACTCAGCTGCCGTCTGCCGAGCG CCCGGCGAGGAGCGACCCCAGACGGATCCTTCTTAGTCCCTCCGCCCCCCACCTCGCCGG GTCCCGGAGCCTCCGTCCTTCTCGCCGCTCTCCGGGTGGCCATGGAGTGTCCGCACCTCA GCTCCAGCGTCTGCATCGCTCCGGACTCAGCCAAGTTCCCCAACGGCTCCCCGTCGTCCT GGTGCTGCAGCGTGTGCCGGTCCAACAAAAGCCCCTGGGTCTGTTTGACTTGTTCAAGTG TCCACTGTGGAAGGTATGTGAATGGCCATGCAAAAAAACATTATGAAGATGCACAAATAC CTTTAACCAATCATAAGAAATCAGAAAAGCAAGAAAAAGCTCAGCACACAGTGTGTATGG ATTGCAGTAGCTACAGTACATATTGTTATCGCTGTGATGATTTTGTGGTTAATGACACCA AGCTGGGACTGGTACAGAAAGTCAGAGAACACTTACAGAACTTGGAAAACTCAGCTTTCA CAGCTGACAGGCATAGGAAAAGAAAACTTTTGGAAAACTCATCACTAAACAGCAAGTTAT TAAAAGTAAATGGAAGTACCACTGCCATTTGTGCCACAGGTCTTCGAAATTTGGGGAACA CGTGTTTCATGAATGCCATCCTTCAGTCACTCAGTAACATTGAGCAGTTTTGCTGTTATT TCAAAGAACTACCCGCTGTGGAGTTAAGGAATGGGAAGACAGCAGGGAGGCGAACGTACC ACACCAGGAGCCAGGGGGACAACAACGTGTCTTTGGTAGAAGAGTTTAGGAAGACACTCT GTGCTTTATGGCAAGGGAGCCAGACTGCATTTAGCCCGGAATCCTTATTTTATGTTGTTT GGAAGATTATGCCAAATTTTAGGGGCTATCAGCAGCAGGATGCCCATGAATTCATGCGCT ACCTGTTAGACCACCTGCACTTGGAACTCCAGGGCGGTTTCAATGGGATCTCCCGCTCAT CAATTCTGCAAGAGAATTCCACTCTGTCTGCAAGTAACAAATGTTGCATAAATGGAGCAT CTACAGTTGTCACGGCTATATTCGGAGGCATTCTCCAAAATGAGGTTAACTGCCTCATAT GTGGGACAGAATCTAGAAAGTTTGATCCATTCCTAGACCTTTCATTAGATATTCCAAGTC AGTTCAGAAATAAGCGCTCTAAGAATCAAGAAAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1012-1129, - strand, RNAz p=0.70743 | |
| 1130-1236, + strand, RNAz p=0.750618 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1012-1129, - strand, RNAz p=0.70743 | |
| 1130-1236, + strand, RNAz p=0.750618 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-312, gnl|bosTau2|chr10 (31422593-31422900) | |
| 1-312, gnl|Hg17|chr15 (61583772-61584082) | |
| 1-312, gnl|Mm7|chr9 (66623409-66623112) | |
| 368-527, gnl|bosTau2|chr10 (31453998-31454155) | |
| 368-527, gnl|Hg17|chr15 (61616271-61616426) | |
| 368-527, gnl|Mm7|chr9 (66593018-66592864) | |
| 753-870, gnl|bosTau2|chr10 (31506749-31506866) | |
| 753-870, gnl|canFam2|chr30 (31132044-31132212) | |
| 753-870, gnl|danRer3|chr25 (22533059-22533182) | |
| 753-870, gnl|dasNov1|scaffold_175142 (4087-3928) | |
| 753-870, gnl|echTel1|scaffold_193555 (4371-4206) | |
| 753-870, gnl|fr1|chrUn (157794183-157794034) | |
| 753-870, gnl|galGal2|chr10 (4836592-4836432) | |
| 753-870, gnl|hg17|chr15 (61639074-61639236) | |
| 753-870, gnl|Hg17|chr15 (61639107-61639224) | |
| 753-870, gnl|loxAfr1|scaffold_1012 (65805-65966) | |
| 753-870, gnl|mm7|chr9 (66572995-66572829) | |
| 753-870, gnl|Mm7|chr9 (66572956-66572839) | |
| 753-870, gnl|monDom2|scaffold_12 (50040321-50040148) | |
| 753-870, gnl|oryCun1|scaffold_202462 (15503-15669) | |
| 753-870, gnl|panTro1|chr16 (62098244-62098406) | |
| 753-870, gnl|rheMac2|chr7 (41940412-41940574) | |
| 753-870, gnl|rn3|chr8 (70867673-70867507) | |
| 753-870, gnl|tetNig1|chr13 (7367950-7367828) | |
| 753-870, gnl|xenTro1|scaffold_62 (1235713-1235886) | |
| 981-1129, gnl|bosTau2|chr10 (31516800-31516948) | |
| 981-1129, gnl|canFam2|chr30 (31143090-31143198) | |
| 981-1129, gnl|danRer3|chr25 (22535050-22535151) | |
| 981-1129, gnl|dasNov1|scaffold_10536 (111-4) | |
| 981-1129, gnl|echTel1|scaffold_49319 (4016-3908) | |
| 981-1129, gnl|fr1|chrUn (157793332-157793232) | |
| 981-1129, gnl|galGal2|chr10 (4833057-4832950) | |
| 981-1129, gnl|hg17|chr15 (61649676-61649783) | |
| 981-1129, gnl|Hg17|chr15 (61649684-61649831) | |
| 981-1129, gnl|loxAfr1|scaffold_1012 (75670-75780) | |
| 981-1129, gnl|mm7|chr9 (66560730-66560622) | |
| 981-1129, gnl|Mm7|chr9 (66560720-66560572) | |
| 981-1129, gnl|monDom2|scaffold_12 (50030654-50030546) | |
| 981-1129, gnl|oryCun1|scaffold_177047 (41879-41987) | |
| 981-1129, gnl|panTro1|chr16 (62108789-62108896) | |
| 981-1129, gnl|rheMac2|chr7 (41949008-41949115) | |
| 981-1129, gnl|tetNig1|chr13 (7367180-7367081) | |
| 981-1129, gnl|xenTro1|scaffold_62 (1239048-1239150) | |
| 1130-1236, gnl|bosTau2|chr10 (31520207-31520313) | |
| 1130-1236, gnl|canFam2|chr30 (31146533-31146655) | |
| 1130-1236, gnl|danRer3|chr25 (22537376-22537497) | |
| 1130-1236, gnl|dasNov1|scaffold_41793 (1839-1963) | |
| 1130-1236, gnl|echTel1|scaffold_49319 (893-771) | |
| 1130-1236, gnl|fr1|chrUn (157793081-157792961) | |
| 1130-1236, gnl|galGal2|chr10 (4831603-4831481) | |
| 1130-1236, gnl|hg17|chr15 (61653290-61653412) | |
| 1130-1236, gnl|Hg17|chr15 (61653298-61653404) | |
| 1130-1236, gnl|loxAfr1|scaffold_1012 (80571-80693) | |
| 1130-1236, gnl|mm7|chr9 (66557559-66557437) | |
| 1130-1236, gnl|Mm7|chr9 (66557549-66557443) | |
| 1130-1236, gnl|monDom2|scaffold_12 (50027941-50027820) | |
| 1130-1236, gnl|oryCun1|scaffold_177047 (46087-46209) | |
| 1130-1236, gnl|panTro1|chr16 (62112408-62112530) | |
| 1130-1236, gnl|rheMac2|chr7 (41952669-41952791) | |
| 1130-1236, gnl|rn3|chr8 (70855350-70855228) | |
| 1130-1236, gnl|tetNig1|chr13 (7366918-7366797) | |
| 1130-1236, gnl|xenTro1|scaffold_62 (1239767-1239889) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-312, gnl|bosTau2|chr10 (31422593-31422900) | |
| 1-312, gnl|Hg17|chr15 (61583772-61584082) | |
| 1-312, gnl|Mm7|chr9 (66623409-66623112) | |
| 368-527, gnl|bosTau2|chr10 (31453998-31454155) | |
| 368-527, gnl|Hg17|chr15 (61616271-61616426) | |
| 368-527, gnl|Mm7|chr9 (66593018-66592864) | |
| 753-870, gnl|bosTau2|chr10 (31506749-31506866) | |
| 753-870, gnl|canFam2|chr30 (31132044-31132212) | |
| 753-870, gnl|danRer3|chr25 (22533059-22533182) | |
| 753-870, gnl|dasNov1|scaffold_175142 (4087-3928) | |
| 753-870, gnl|echTel1|scaffold_193555 (4371-4206) | |
| 753-870, gnl|fr1|chrUn (157794183-157794034) | |
| 753-870, gnl|galGal2|chr10 (4836592-4836432) | |
| 753-870, gnl|hg17|chr15 (61639074-61639236) | |
| 753-870, gnl|Hg17|chr15 (61639107-61639224) | |
| 753-870, gnl|loxAfr1|scaffold_1012 (65805-65966) | |
| 753-870, gnl|mm7|chr9 (66572995-66572829) | |
| 753-870, gnl|Mm7|chr9 (66572956-66572839) | |
| 753-870, gnl|monDom2|scaffold_12 (50040321-50040148) | |
| 753-870, gnl|oryCun1|scaffold_202462 (15503-15669) | |
| 753-870, gnl|panTro1|chr16 (62098244-62098406) | |
| 753-870, gnl|rheMac2|chr7 (41940412-41940574) | |
| 753-870, gnl|rn3|chr8 (70867673-70867507) | |
| 753-870, gnl|tetNig1|chr13 (7367950-7367828) | |
| 753-870, gnl|xenTro1|scaffold_62 (1235713-1235886) | |
| 981-1129, gnl|bosTau2|chr10 (31516800-31516948) | |
| 981-1129, gnl|canFam2|chr30 (31143090-31143198) | |
| 981-1129, gnl|danRer3|chr25 (22535050-22535151) | |
| 981-1129, gnl|dasNov1|scaffold_10536 (111-4) | |
| 981-1129, gnl|echTel1|scaffold_49319 (4016-3908) | |
| 981-1129, gnl|fr1|chrUn (157793332-157793232) | |
| 981-1129, gnl|galGal2|chr10 (4833057-4832950) | |
| 981-1129, gnl|hg17|chr15 (61649676-61649783) | |
| 981-1129, gnl|Hg17|chr15 (61649684-61649831) | |
| 981-1129, gnl|loxAfr1|scaffold_1012 (75670-75780) | |
| 981-1129, gnl|mm7|chr9 (66560730-66560622) | |
| 981-1129, gnl|Mm7|chr9 (66560720-66560572) | |
| 981-1129, gnl|monDom2|scaffold_12 (50030654-50030546) | |
| 981-1129, gnl|oryCun1|scaffold_177047 (41879-41987) | |
| 981-1129, gnl|panTro1|chr16 (62108789-62108896) | |
| 981-1129, gnl|rheMac2|chr7 (41949008-41949115) | |
| 981-1129, gnl|tetNig1|chr13 (7367180-7367081) | |
| 981-1129, gnl|xenTro1|scaffold_62 (1239048-1239150) | |
| 1130-1236, gnl|bosTau2|chr10 (31520207-31520313) | |
| 1130-1236, gnl|canFam2|chr30 (31146533-31146655) | |
| 1130-1236, gnl|danRer3|chr25 (22537376-22537497) | |
| 1130-1236, gnl|dasNov1|scaffold_41793 (1839-1963) | |
| 1130-1236, gnl|echTel1|scaffold_49319 (893-771) | |
| 1130-1236, gnl|fr1|chrUn (157793081-157792961) | |
| 1130-1236, gnl|galGal2|chr10 (4831603-4831481) | |
| 1130-1236, gnl|hg17|chr15 (61653290-61653412) | |
| 1130-1236, gnl|Hg17|chr15 (61653298-61653404) | |
| 1130-1236, gnl|loxAfr1|scaffold_1012 (80571-80693) | |
| 1130-1236, gnl|mm7|chr9 (66557559-66557437) | |
| 1130-1236, gnl|Mm7|chr9 (66557549-66557443) | |
| 1130-1236, gnl|monDom2|scaffold_12 (50027941-50027820) | |
| 1130-1236, gnl|oryCun1|scaffold_177047 (46087-46209) | |
| 1130-1236, gnl|panTro1|chr16 (62112408-62112530) | |
| 1130-1236, gnl|rheMac2|chr7 (41952669-41952791) | |
| 1130-1236, gnl|rn3|chr8 (70855350-70855228) | |
| 1130-1236, gnl|tetNig1|chr13 (7366918-7366797) | |
| 1130-1236, gnl|xenTro1|scaffold_62 (1239767-1239889) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) |