Non-Coding RNA Search

Ss1.1-Pig4-TMW8060K12.3

Sequence:


               
               TGAGCAGCTACGAGAAGACCCAGAGCTACCCCACGGACTGGTCAGACGATGAGTCCAACA
ACCCGTTCTCCTCCACCGACGCCAATGGGGACTCAAATCCGTTTGACGAGGACGCCACCT
CGGGGACAGAAGTGCGGGTCCGGGCCCTTTACGACTACGAAGGGCAGGAGCACGATGAGC
TGAGCTTCAAGGCCGGGGACGAGCTGACCAAGATAGAGGACGAGGATGAGCAGGGCTGGT
GCAAGGGGCGCTTGGACAACGGGCAGGTTGGCCTGTACCCAGCGAATTACGTCGAGGCCA
TCCCGTGACAGGCCAGTGGGCTGGCTGGCAGAGGGATGGAGGCGGAGGTCCCAGGAGCTC
TGTTAGCCATAGGCCCCGGGCAGCGGCGCCTCCGGCCAGCCGTGGGGGCATCCACTCCTT
TTCCTGCAAAAGATGATGGTTCCATTGCTCTTGGCTCCATAGTGTCTCTTGAAGGCAGAC
GAGCGGGTCCTTTCAGCTGGGACTCGGTGCAGATGGAGAGATCTGAGCACAGGAAGAAAG
ACAGCACAGCAGACATGGCTGGGCCCCTCCCTGCCCCCGCTCCCCCGCGCCGTGTGCTGG
CTTATCATGGATCTGTATGTTCTTGGCCTTGTCCTTCCACCTCTCTTCCCAGCCAGCGGT
GGGCTACACTGATTCTGGTTCCACCAGTTATTTTCTCTGACAAGTCCCATCACCTGCAAC
TTAAATGAACAAACTTACATGCCGTTTTCTGAATGAAGACTTGGAGGTTTTTAATTTAAA
GGCTGTGTACAGTTATAGTTTTTTATGTACCTGTTCTTCCATTCATTTATCCTTAAATTA
TGGCACAGATCGATGTACACGAGTCTTGAGGAAACAGCTCTATTTCCATGCTGTACTGTC
AACCAGCCGTGCCACTGCCTGGGGCGAGCTGCAAGAGCTGGGAGCTCGCTCGGACAGACG
ATGTTTAGGCCAGAGAGTGCACGGGAAGGCCGGAACACATGGCTGGGTTTCTGTTGCGAT
GCTCTCCGTATGTGGGGGGTCCAAATGGCATTTCCGGAAGTAACTTACCTAGTGCTCGCT
AAAGTCGCCGTATTTAAAAACTATTTTCACTCTTACTTGTGCTTAATACTTTACTCTTAC
AAATTAACGATTTCATCAGTGATCTGAAAGGTTAAAAATAAAAAATAAGAAGACTAACTT
TGCAAGCAAATGCATCTGTAGTTGAGATGCTTTGTACCAGGCTCTCGTGTCTTGGTGTAT
ATCTGTACATGTTATTTGATATTCAGAGAATCTAAAGAGCTCGTCTACTGTGTTAATGAG
ATTTAACAGCTTTTGACAGTGGGTTTAATTTGTAAACTGCTTGAAGACCGTGCGTTCATG
CCCAGGCGCTCGGGCTCCATGCCTCGGAAGCGGAGCCCGCTGTCGGGAGACCTGTCCTCA
CTGCCCAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCAGCTACGAGAAGACCCAGAGCTACCCCACGGACTGGTCAGACGATGAGTCCAACA
ACCCGTTCTCCTCCACCGACGCCAATGGGGACTCAAATCCGTTTGACGAGGACGCCACCT
CGGGGACAGAAGTGCGGGTCCGGGCCCTTTACGACTACGAAGGGCAGGAGCACGATGAGC
TGAGCTTCAAGGCCGGGGACGAGCTGACCAAGATAGAGGACGAGGATGAGCAGGGCTGGT
GCAAGGGGCGCTTGGACAACGGGCAGGTTGGCCTGTACCCAGCGAATTACGTCGAGGCCA
TCCCGTGACAGGCCAGTGGGCTGGCTGGCAGAGGGATGGAGGCGGAGGTCCCAGGAGCTC
TGTTAGCCATAGGCCCCGGGCAGCGGCGCCTCCGGCCAGCCGTGGGGGCATCCACTCCTT
TTCCTGCAAAAGATGATGGTTCCATTGCTCTTGGCTCCATAGTGTCTCTTGAAGGCAGAC
GAGCGGGTCCTTTCAGCTGGGACTCGGTGCAGATGGAGAGATCTGAGCACAGGAAGAAAG
ACAGCACAGCAGACATGGCTGGGCCCCTCCCTGCCCCCGCTCCCCCGCGCCGTGTGCTGG
CTTATCATGGATCTGTATGTTCTTGGCCTTGTCCTTCCACCTCTCTTCCCAGCCAGCGGT
GGGCTACACTGATTCTGGTTCCACCAGTTATTTTCTCTGACAAGTCCCATCACCTGCAAC
TTAAATGAACAAACTTACATGCCGTTTTCTGAATGAAGACTTGGAGGTTTTTAATTTAAA
GGCTGTGTACAGTTATAGTTTTTTATGTACCTGTTCTTCCATTCATTTATCCTTAAATTA
TGGCACAGATCGATGTACACGAGTCTTGAGGAAACAGCTCTATTTCCATGCTGTACTGTC
AACCAGCCGTGCCACTGCCTGGGGCGAGCTGCAAGAGCTGGGAGCTCGCTCGGACAGACG
ATGTTTAGGCCAGAGAGTGCACGGGAAGGCCGGAACACATGGCTGGGTTTCTGTTGCGAT
GCTCTCCGTATGTGGGGGGTCCAAATGGCATTTCCGGAAGTAACTTACCTAGTGCTCGCT
AAAGTCGCCGTATTTAAAAACTATTTTCACTCTTACTTGTGCTTAATACTTTACTCTTAC
AAATTAACGATTTCATCAGTGATCTGAAAGGTTAAAAATAAAAAATAAGAAGACTAACTT
TGCAAGCAAATGCATCTGTAGTTGAGATGCTTTGTACCAGGCTCTCGTGTCTTGGTGTAT
ATCTGTACATGTTATTTGATATTCAGAGAATCTAAAGAGCTCGTCTACTGTGTTAATGAG
ATTTAACAGCTTTTGACAGTGGGTTTAATTTGTAAACTGCTTGAAGACCGTGCGTTCATG
CCCAGGCGCTCGGGCTCCATGCCTCGGAAGCGGAGCCCGCTGTCGGGAGACCTGTCCTCA
CTGCCCAGCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|9367875|emb|CAB97538.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|9367875|emb|CAB97538.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-199, gnl|bosTau2|chr23 (6734394-6734581)
               

               
               3-199, gnl|Hg17|chr6 (34607359-34607546)
               

               
               3-199, gnl|Mm7|chr17 (25893515-25893702)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-199, gnl|bosTau2|chr23 (6734394-6734581)
               

               
               3-199, gnl|Hg17|chr6 (34607359-34607546)
               

               
               3-199, gnl|Mm7|chr17 (25893515-25893702)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cki (0.330469)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

	3-199, gnl\|bosTau2\|chr23 (6734394-6734581)
	3-199, gnl\|Hg17\|chr6 (34607359-34607546)
	3-199, gnl\|Mm7\|chr17 (25893515-25893702)

	cki (0.330469)
	med (0.232504)
	tes (0.207814)
	ill (0.175593)
	spl (0.143184)
	cst (0.140036)
	pla (0.133672)
	ova (0.129132)
	eje (0.0988338)