Non-Coding RNA Search

Ss1.1-Pig4-TMW8060K13.5

Sequence:


               
               GAAATAGGAAAAGAGAGGAAAGTCAGTCAAGCTGTGGGATGGTCTCCACTTCTATTAACC
TAGGAACACATAGAGTATGAGATTTTTTTTTTTTTTAAGTTCTTAACAAATACACATTTC
ACATTTAATCATGTAGAACCTTGATGGGTCTTTGTTCCCAAGGACTCGCACATTTTTGCA
CGGATTATACTCCATCCCATTCACTTCTGCATTCCTTTAACTTTTAATCCCTGTGCTTGT
CTCACTTTTCATCTGGTTGAGTGGCTTTTTTCAGTGTGGTATTTGCTGTTGCAGTTTTTC
CTGGGTGATTCTGCCAACTCACAGGTGCTTTTAGGCTTGAAGTCTCCATCCTCACTTCCA
CATTGCCCGGGATCATAAAAAATAGCCATTTTCCTGTTTTTTGCAAAAATAGATCTTTCT
GTTGCTCTAAACTGATCATGTCTCTTGGGAAAACAATGCATAATTCTAAGTCAGGCTATA
AAGAATTTAACATGTAAATTACATAGGTTAAACCAAGCCCAGATTTAATTTACAGTCATC
CAAATTCAAAATCTATAATGACCAGTGGTTGGGGCTCATTTGAAAACTGATATTGGAGAG
AGAGAACCAAACTTCAATATTTTTCTAAAGAAATTATAGATGGAGTATTCTAGATAAAGC
ATTTTGAAGTTATATTTGAAAAGTTCATTATTACTGCAAAATATTATCTTGAGATTTTCC
TTTTCCACATTACCTGGACATGATAATACAAACTTTTTTTTCTCTCAAATACAACTTTTC
TAATACCGTGCCACTTTTTATATCAGAAATATTACCACTTTTTTTCTAATATCCAAACAA
AACTATCAAAATTGACTTTTTCCTCTAGAGGAAGATAGCTATAAAGAACAGTTTAAATTC
TTTTTTTTTTTTCCCCAAGCTTAAGTCCTTTTTGCCTGACAATTGAAAATCAGGGCACAT
AAAATTGTGTTAGTTTCATTTAGTTTACTTTTAAAAAGCAAGAAAGCTTGAAAAGATTGT
GAAACCACAGTTTCATTATTCTTATAATCCTTCTGCAACTCAAATTACATATTGCAGGAG
ACATTTTCATATCATTGATGTTACATTTACACCACACTTTCAAAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAGGAAAAGAGAGGAAAGTCAGTCAAGCTGTGGGATGGTCTCCACTTCTATTAACC
TAGGAACACATAGAGTATGAGATTTTTTTTTTTTTTAAGTTCTTAACAAATACACATTTC
ACATTTAATCATGTAGAACCTTGATGGGTCTTTGTTCCCAAGGACTCGCACATTTTTGCA
CGGATTATACTCCATCCCATTCACTTCTGCATTCCTTTAACTTTTAATCCCTGTGCTTGT
CTCACTTTTCATCTGGTTGAGTGGCTTTTTTCAGTGTGGTATTTGCTGTTGCAGTTTTTC
CTGGGTGATTCTGCCAACTCACAGGTGCTTTTAGGCTTGAAGTCTCCATCCTCACTTCCA
CATTGCCCGGGATCATAAAAAATAGCCATTTTCCTGTTTTTTGCAAAAATAGATCTTTCT
GTTGCTCTAAACTGATCATGTCTCTTGGGAAAACAATGCATAATTCTAAGTCAGGCTATA
AAGAATTTAACATGTAAATTACATAGGTTAAACCAAGCCCAGATTTAATTTACAGTCATC
CAAATTCAAAATCTATAATGACCAGTGGTTGGGGCTCATTTGAAAACTGATATTGGAGAG
AGAGAACCAAACTTCAATATTTTTCTAAAGAAATTATAGATGGAGTATTCTAGATAAAGC
ATTTTGAAGTTATATTTGAAAAGTTCATTATTACTGCAAAATATTATCTTGAGATTTTCC
TTTTCCACATTACCTGGACATGATAATACAAACTTTTTTTTCTCTCAAATACAACTTTTC
TAATACCGTGCCACTTTTTATATCAGAAATATTACCACTTTTTTTCTAATATCCAAACAA
AACTATCAAAATTGACTTTTTCCTCTAGAGGAAGATAGCTATAAAGAACAGTTTAAATTC
TTTTTTTTTTTTCCCCAAGCTTAAGTCCTTTTTGCCTGACAATTGAAAATCAGGGCACAT
AAAATTGTGTTAGTTTCATTTAGTTTACTTTTAAAAAGCAAGAAAGCTTGAAAAGATTGT
GAAACCACAGTTTCATTATTCTTATAATCCTTCTGCAACTCAAATTACATATTGCAGGAG
ACATTTTCATATCATTGATGTTACATTTACACCACACTTTCAAAGACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               973-1128, - strand, RNAz p=0.943465

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               973-1128, - strand, RNAz p=0.943465

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-823, gnl|bosTau2|chr1 (48988748-48989572)
               

               
               1-823, gnl|Hg17|chr3 (190075024-190075881)
               

               
               1-823, gnl|Mm7|chr16 (24639708-24640502)
               


               
               831-1128, gnl|bosTau2|chr1 (48989598-48989898)
               

               
               831-1128, gnl|Hg17|chr3 (190075889-190076190)
               

               
               831-1128, gnl|Mm7|chr16 (24640510-24640824)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-823, gnl|bosTau2|chr1 (48988748-48989572)
               

               
               1-823, gnl|Hg17|chr3 (190075024-190075881)
               

               
               1-823, gnl|Mm7|chr16 (24639708-24640502)
               


               
               831-1128, gnl|bosTau2|chr1 (48989598-48989898)
               

               
               831-1128, gnl|Hg17|chr3 (190075889-190076190)
               

               
               831-1128, gnl|Mm7|chr16 (24640510-24640824)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.259471)
               

               
               sin (0.174948)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-823, gnl\|bosTau2\|chr1 (48988748-48989572)
	1-823, gnl\|Hg17\|chr3 (190075024-190075881)
	1-823, gnl\|Mm7\|chr16 (24639708-24640502)

	831-1128, gnl\|bosTau2\|chr1 (48989598-48989898)
	831-1128, gnl\|Hg17\|chr3 (190075889-190076190)
	831-1128, gnl\|Mm7\|chr16 (24640510-24640824)