Ss1.1-Pig4-TMW8060K19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGTTCTTCCGCTCTGGCAAAAAGAAGTGCTTCCGGGTTGCCGCCGGCTGCCGCCTCC CGGCGCGTCTAGGAGCCATGTCCACCTTGTTCCCCTCACTCTTCCCCCGTGTGACTGAGA CACTCTGGTTTAATCTGGATCGACCCTGTGTGGAGGAGACGGAGCTGCAGCAACAAGAAC AGCAGCATCAGGCCTGGCTCCAGAGCATCGCAGAGAAAGACAACAACCTGGTACCTATCG GCAAGCCGGCCTCAGAGCACTACGACGACGAGGAAGAGGAAGATGAAGACGATGATGAGG ACAGCGAGGAGGACTCAGAGGACGACGAGGACATGCAGGACATGGATGAGATGAACGACT ACAACGAGTCACCTGATGACGGAGAGGTCAATGAGGTGGACATGGAAGGCAATGAACAGG ATCAGGACCAGTGGATGATCTAGGTAGACAAGGCAGAGTGGTCTCAGGGAGATTCCAGGT CAGCCCACCCCGCCCTGGACCCCCTGCAGAACCAGCCGATCACCCCCAGGGCTGGAAAGC TCACCCTTGGGCGCCTTCTCAGCTGCTGCAGGACCTGGCCTCCGTGGCCCCTCCTAGGCC ATCCGTTTGCCCTTGAATCCCCAAGGCCTGAGCCACCCCACCGTTCTGGCCAGCACCTCA CCCCTTGGTTGCTGATCTAGTTTCTTTCTAATTCTTTAATAAAGACACAGTACTGATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGTTCTTCCGCTCTGGCAAAAAGAAGTGCTTCCGGGTTGCCGCCGGCTGCCGCCTCC CGGCGCGTCTAGGAGCCATGTCCACCTTGTTCCCCTCACTCTTCCCCCGTGTGACTGAGA CACTCTGGTTTAATCTGGATCGACCCTGTGTGGAGGAGACGGAGCTGCAGCAACAAGAAC AGCAGCATCAGGCCTGGCTCCAGAGCATCGCAGAGAAAGACAACAACCTGGTACCTATCG GCAAGCCGGCCTCAGAGCACTACGACGACGAGGAAGAGGAAGATGAAGACGATGATGAGG ACAGCGAGGAGGACTCAGAGGACGACGAGGACATGCAGGACATGGATGAGATGAACGACT ACAACGAGTCACCTGATGACGGAGAGGTCAATGAGGTGGACATGGAAGGCAATGAACAGG ATCAGGACCAGTGGATGATCTAGGTAGACAAGGCAGAGTGGTCTCAGGGAGATTCCAGGT CAGCCCACCCCGCCCTGGACCCCCTGCAGAACCAGCCGATCACCCCCAGGGCTGGAAAGC TCACCCTTGGGCGCCTTCTCAGCTGCTGCAGGACCTGGCCTCCGTGGCCCCTCCTAGGCC ATCCGTTTGCCCTTGAATCCCCAAGGCCTGAGCCACCCCACCGTTCTGGCCAGCACCTCA CCCCTTGGTTGCTGATCTAGTTTCTTTCTAATTCTTTAATAAAGACACAGTACTGATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 394-512, - strand, RNAz p=0.533229 | |
| 473-650, - strand, RNAz p=0.998703 | |
| 537-652, + strand, RNAz p=0.842797 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-512, - strand, RNAz p=0.533229 | |
| 473-650, - strand, RNAz p=0.998703 | |
| 537-652, + strand, RNAz p=0.842797 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 67-197, gnl|bosTau2|chr15 (29937061-29937191) | |
| 67-197, gnl|canFam2|chr21 (28978171-28978024) | |
| 67-197, gnl|canFam2|chr21 (28978151-28978011) | |
| 67-197, gnl|danRer3|chrNA (234102109-234102240) | |
| 67-197, gnl|danRer3|chrNA (234102117-234102236) | |
| 67-197, gnl|dasNov1|scaffold_92109 (586-733) | |
| 67-197, gnl|dasNov1|scaffold_92109 (606-740) | |
| 67-197, gnl|echTel1|scaffold_313942 (81301-81445) | |
| 67-197, gnl|echTel1|scaffold_315832 (5127-5256) | |
| 67-197, gnl|fr1|chrUn (265379276-265379144) | |
| 67-197, gnl|fr1|chrUn (265379271-265379141) | |
| 67-197, gnl|galGal2|chrUn (20961068-20960936) | |
| 67-197, gnl|hg17|chr11 (71499832-71499979) | |
| 67-197, gnl|Hg17|chr11 (71499981-71499851) | |
| 67-197, gnl|hg17|chrX (8634685-8634825) | |
| 67-197, gnl|loxAfr1|scaffold_12984 (37508-37655) | |
| 67-197, gnl|loxAfr1|scaffold_12984 (37528-37657) | |
| 67-197, gnl|mm7|chr7 (97944328-97944181) | |
| 67-197, gnl|mm7|chr7 (97944307-97944174) | |
| 67-197, gnl|Mm7|chr7 (97944177-97944307) | |
| 67-197, gnl|monDom2|scaffold_74 (6424228-6424095) | |
| 67-197, gnl|oryCun1|scaffold_211552 (73722-73575) | |
| 67-197, gnl|oryCun1|scaffold_27513 (1583-1443) | |
| 67-197, gnl|panTro1|chr9 (72768148-72768295) | |
| 67-197, gnl|panTro1|chrX (8900030-8900170) | |
| 67-197, gnl|rheMac2|chr14 (70153325-70153472) | |
| 67-197, gnl|rheMac2|chrX (6454162-6454301) | |
| 67-197, gnl|rn3|chr1 (159438485-159438338) | |
| 67-197, gnl|rn3|chr1 (159438464-159438336) | |
| 67-197, gnl|tetNig1|chrUn_random (89906009-89906157) | |
| 67-197, gnl|tetNig1|chrUn_random (89906030-89906149) | |
| 67-197, gnl|xenTro1|scaffold_298 (70793-70654) | |
| 67-197, gnl|xenTro1|scaffold_298 (70773-70644) | |
| 394-720, gnl|bosTau2|chr15 (29938327-29938669) | |
| 394-720, gnl|canFam2|chr21 (28979641-28979415) | |
| 394-720, gnl|echTel1|scaffold_315832 (4605-4822) | |
| 394-720, gnl|Hg17|chr11 (71498624-71498284) | |
| 394-720, gnl|hg17|chrX (8634126-8634378) | |
| 394-720, gnl|mm7|chr7 (97945793-97945538) | |
| 394-720, gnl|Mm7|chr7 (97945428-97945773) | |
| 394-720, gnl|oryCun1|scaffold_27513 (2114-1891) | |
| 394-720, gnl|panTro1|chrX (8899470-8899722) | |
| 394-720, gnl|rheMac2|chrX (6453602-6453854) | |
| 394-720, gnl|rn3|chr1 (159440389-159440131) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-197, gnl|bosTau2|chr15 (29937061-29937191) | |
| 67-197, gnl|canFam2|chr21 (28978171-28978024) | |
| 67-197, gnl|canFam2|chr21 (28978151-28978011) | |
| 67-197, gnl|danRer3|chrNA (234102109-234102240) | |
| 67-197, gnl|danRer3|chrNA (234102117-234102236) | |
| 67-197, gnl|dasNov1|scaffold_92109 (586-733) | |
| 67-197, gnl|dasNov1|scaffold_92109 (606-740) | |
| 67-197, gnl|echTel1|scaffold_313942 (81301-81445) | |
| 67-197, gnl|echTel1|scaffold_315832 (5127-5256) | |
| 67-197, gnl|fr1|chrUn (265379276-265379144) | |
| 67-197, gnl|fr1|chrUn (265379271-265379141) | |
| 67-197, gnl|galGal2|chrUn (20961068-20960936) | |
| 67-197, gnl|hg17|chr11 (71499832-71499979) | |
| 67-197, gnl|Hg17|chr11 (71499981-71499851) | |
| 67-197, gnl|hg17|chrX (8634685-8634825) | |
| 67-197, gnl|loxAfr1|scaffold_12984 (37508-37655) | |
| 67-197, gnl|loxAfr1|scaffold_12984 (37528-37657) | |
| 67-197, gnl|mm7|chr7 (97944328-97944181) | |
| 67-197, gnl|mm7|chr7 (97944307-97944174) | |
| 67-197, gnl|Mm7|chr7 (97944177-97944307) | |
| 67-197, gnl|monDom2|scaffold_74 (6424228-6424095) | |
| 67-197, gnl|oryCun1|scaffold_211552 (73722-73575) | |
| 67-197, gnl|oryCun1|scaffold_27513 (1583-1443) | |
| 67-197, gnl|panTro1|chr9 (72768148-72768295) | |
| 67-197, gnl|panTro1|chrX (8900030-8900170) | |
| 67-197, gnl|rheMac2|chr14 (70153325-70153472) | |
| 67-197, gnl|rheMac2|chrX (6454162-6454301) | |
| 67-197, gnl|rn3|chr1 (159438485-159438338) | |
| 67-197, gnl|rn3|chr1 (159438464-159438336) | |
| 67-197, gnl|tetNig1|chrUn_random (89906009-89906157) | |
| 67-197, gnl|tetNig1|chrUn_random (89906030-89906149) | |
| 67-197, gnl|xenTro1|scaffold_298 (70793-70654) | |
| 67-197, gnl|xenTro1|scaffold_298 (70773-70644) | |
| 394-720, gnl|bosTau2|chr15 (29938327-29938669) | |
| 394-720, gnl|canFam2|chr21 (28979641-28979415) | |
| 394-720, gnl|echTel1|scaffold_315832 (4605-4822) | |
| 394-720, gnl|Hg17|chr11 (71498624-71498284) | |
| 394-720, gnl|hg17|chrX (8634126-8634378) | |
| 394-720, gnl|mm7|chr7 (97945793-97945538) | |
| 394-720, gnl|Mm7|chr7 (97945428-97945773) | |
| 394-720, gnl|oryCun1|scaffold_27513 (2114-1891) | |
| 394-720, gnl|panTro1|chrX (8899470-8899722) | |
| 394-720, gnl|rheMac2|chrX (6453602-6453854) | |
| 394-720, gnl|rn3|chr1 (159440389-159440131) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| che (0.272628) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |