Ss1.1-Pig4-TMW8060L05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGACTAGGCCCAATGGAAGCACAATGATGGGAGAGGTGGGACCAGGCCCACGGACTC CGTGGAGCGGCTGGCGCCGCTAGAGCCGGGAAGATGGCGGTTCTCGCGCCTTTAATTGCT CTTATTTATTCGATACCTCGACTATCACGATGGCTGGCCCGACCTTACTACCTTCTGTCA GCCCTCCTCTCTGCTGCCTTCCTACTCGTGAGGAAGCTGCCCCCTGTCTGCTACAATCTC CCCACGCAACGCGAAGACGGCAACCCGTGTGACTTTGACTGGAGAGAAGTAGAGATCCTG ATGTTTCTCAGTGCCATCGTGATGATGAAGAACCGAAGATCCATCACCGTGGAACAACAC ATAGGCAACATCTTCATGTTTAGTAAAGTGGCCAATGCAATTCTTTTCTTCCGCCTGGAT ATTCGCATGGGCCTGCTTTACCTTACACTCTGCATAGTGTTCCTGATGACATGCAAACCC CCCCTGTATATGGGCCCTGAGTACATCAAGTACTTCAGTGATAAGACCATTGATGAAGAG CTGGCGCGGGACAAGAGGGTCACTTGGATCGTGGAGTTCTTTGCCAATTGGTCTAATGAC TGCCAGTCATTTGCTCCTATCTATGCTGACCTCTCGCTCAAGTACAACTGCACAGGGTTA AATTTTGGGAAGGTGGACGTTGGACGCTACACTGATGTTAGTACACGGTACAAAGTGAGC ACGTCACCCCTCACCAAGCAGCTCCCTACCCTAATCCTCTTCCAAGGTGGCAAGGAAGTC ATGCGGCGGCCACAGATTGACAAGAAAGGACGAGCTGTCTCCTGGACTTTTTCTGAGGAG AATGTGATTCGAGAATTCAACTTGAATGAGCTGTATCATCGGGCCAAGAAGGTGTCAAAG GCTGGTGATAATATCCCCGAGGAGGAGCCTATAGCCCAAACGCCCACTGCAGCGCCAGAT CAGGAGAGCAAGAAAGACAAATAAGATCCCTGCTCTCAGTGCTTCCTCTCCTGTCAATCC CAGGCACCTCTGAGGCTCTGCCCTTTCTGTAACCACAAGCCTGGCCTGAGGCCTTGGACT TTAATTTATGTTTTTCCTGTTTGGCTACGTCTAGGTGGGGCAGGGTATTGCTTCTGATTT TTAAGAGGCATCCAGGTATGACAGGTATCCTTCAGGAAGGCCTCCACTCCAGTGGCCTGC TCTTTAACTGGAGAGAGGGAACCATCTTATGTGGTGGCGGAGGAAATGCTTTCCCACCAA GCTTGGGCGCTCACACATCTCCACCACGTCCGGTTTCATTATTCCTTTTAGCGGACCTAC ACAGCTGTAGATTAGATTAGATTAAAGCCTAACAACAGGCCAAGATGCAGCAGTAGTGCT AAGATTTTTTTCCCTCAAGGATTCTTACTTTAGGCCCTTCTGGCTTGGTTTGTGGCCTGC ATTAAAAAGTATAAGCCTGTCACTGGTCCCAAGGAGAAACCTTTAACCTCAGAGTTTTCG TATGGAATAATCTCCCTATTTTATGGAGATTGCGAAGAAGAGGAATAGAAGTTTGAGACA TCCGGTGGGGCCTGGAGGAGAAAGCCCCTACCATGGTTGGAGTTCACTTACCTTCCTACC TCCTCCCCACTGCCAGTTGATGTTTTTCCATAATAAAGAGACTGGGATTTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGACTAGGCCCAATGGAAGCACAATGATGGGAGAGGTGGGACCAGGCCCACGGACTC CGTGGAGCGGCTGGCGCCGCTAGAGCCGGGAAGATGGCGGTTCTCGCGCCTTTAATTGCT CTTATTTATTCGATACCTCGACTATCACGATGGCTGGCCCGACCTTACTACCTTCTGTCA GCCCTCCTCTCTGCTGCCTTCCTACTCGTGAGGAAGCTGCCCCCTGTCTGCTACAATCTC CCCACGCAACGCGAAGACGGCAACCCGTGTGACTTTGACTGGAGAGAAGTAGAGATCCTG ATGTTTCTCAGTGCCATCGTGATGATGAAGAACCGAAGATCCATCACCGTGGAACAACAC ATAGGCAACATCTTCATGTTTAGTAAAGTGGCCAATGCAATTCTTTTCTTCCGCCTGGAT ATTCGCATGGGCCTGCTTTACCTTACACTCTGCATAGTGTTCCTGATGACATGCAAACCC CCCCTGTATATGGGCCCTGAGTACATCAAGTACTTCAGTGATAAGACCATTGATGAAGAG CTGGCGCGGGACAAGAGGGTCACTTGGATCGTGGAGTTCTTTGCCAATTGGTCTAATGAC TGCCAGTCATTTGCTCCTATCTATGCTGACCTCTCGCTCAAGTACAACTGCACAGGGTTA AATTTTGGGAAGGTGGACGTTGGACGCTACACTGATGTTAGTACACGGTACAAAGTGAGC ACGTCACCCCTCACCAAGCAGCTCCCTACCCTAATCCTCTTCCAAGGTGGCAAGGAAGTC ATGCGGCGGCCACAGATTGACAAGAAAGGACGAGCTGTCTCCTGGACTTTTTCTGAGGAG AATGTGATTCGAGAATTCAACTTGAATGAGCTGTATCATCGGGCCAAGAAGGTGTCAAAG GCTGGTGATAATATCCCCGAGGAGGAGCCTATAGCCCAAACGCCCACTGCAGCGCCAGAT CAGGAGAGCAAGAAAGACAAATAAGATCCCTGCTCTCAGTGCTTCCTCTCCTGTCAATCC CAGGCACCTCTGAGGCTCTGCCCTTTCTGTAACCACAAGCCTGGCCTGAGGCCTTGGACT TTAATTTATGTTTTTCCTGTTTGGCTACGTCTAGGTGGGGCAGGGTATTGCTTCTGATTT TTAAGAGGCATCCAGGTATGACAGGTATCCTTCAGGAAGGCCTCCACTCCAGTGGCCTGC TCTTTAACTGGAGAGAGGGAACCATCTTATGTGGTGGCGGAGGAAATGCTTTCCCACCAA GCTTGGGCGCTCACACATCTCCACCACGTCCGGTTTCATTATTCCTTTTAGCGGACCTAC ACAGCTGTAGATTAGATTAGATTAAAGCCTAACAACAGGCCAAGATGCAGCAGTAGTGCT AAGATTTTTTTCCCTCAAGGATTCTTACTTTAGGCCCTTCTGGCTTGGTTTGTGGCCTGC ATTAAAAAGTATAAGCCTGTCACTGGTCCCAAGGAGAAACCTTTAACCTCAGAGTTTTCG TATGGAATAATCTCCCTATTTTATGGAGATTGCGAAGAAGAGGAATAGAAGTTTGAGACA TCCGGTGGGGCCTGGAGGAGAAAGCCCCTACCATGGTTGGAGTTCACTTACCTTCCTACC TCCTCCCCACTGCCAGTTGATGTTTTTCCATAATAAAGAGACTGGGATTTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 3-282, gnl|bosTau2|chr15 (50448023-50447739) | |
| 3-282, gnl|Hg17|chr11 (57236579-57236855) | |
| 3-282, gnl|Mm7|chr2 (84521846-84521567) | |
| 344-457, gnl|bosTau2|chr15 (50442775-50442662) | |
| 344-457, gnl|canFam2|chr18 (41549445-41549320) | |
| 344-457, gnl|canFam2|chr18 (41549442-41549332) | |
| 344-457, gnl|danRer3|chrUn (147408537-147408412) | |
| 344-457, gnl|danRer3|chrUn (147408534-147408424) | |
| 344-457, gnl|dasNov1|scaffold_16172 (7383-7516) | |
| 344-457, gnl|dasNov1|scaffold_16172 (7386-7496) | |
| 344-457, gnl|echTel1|scaffold_292965 (97795-97662) | |
| 344-457, gnl|echTel1|scaffold_292965 (97792-97682) | |
| 344-457, gnl|fr1|chrUn (235991889-235991765) | |
| 344-457, gnl|fr1|chrUn (271825501-271825391) | |
| 344-457, gnl|galGal2|chr5 (14262798-14262673) | |
| 344-457, gnl|galGal2|chr5 (14262795-14262685) | |
| 344-457, gnl|hg17|chr11 (57261959-57262092) | |
| 344-457, gnl|Hg17|chr11 (57261961-57262074) | |
| 344-457, gnl|hg17|chr9 (37875743-37875853) | |
| 344-457, gnl|loxAfr1|scaffold_15132 (21671-21538) | |
| 344-457, gnl|loxAfr1|scaffold_15132 (21668-21558) | |
| 344-457, gnl|mm7|chr17 (85380964-85381074) | |
| 344-457, gnl|mm7|chr2 (84519578-84519446) | |
| 344-457, gnl|Mm7|chr2 (84519574-84519461) | |
| 344-457, gnl|monDom2|scaffold_33 (20844422-20844553) | |
| 344-457, gnl|monDom2|scaffold_33 (20844425-20844535) | |
| 344-457, gnl|oryCun1|scaffold_211845 (44455-44326) | |
| 344-457, gnl|oryCun1|scaffold_211845 (44452-44342) | |
| 344-457, gnl|panTro1|chr11 (38607279-38607389) | |
| 344-457, gnl|panTro1|chr9 (58170964-58171097) | |
| 344-457, gnl|rheMac2|chr14 (15674465-15674335) | |
| 344-457, gnl|rheMac2|chr14 (15674462-15674352) | |
| 344-457, gnl|rn3|chr3 (67780565-67780433) | |
| 344-457, gnl|rn3|chr3 (67780562-67780452) | |
| 344-457, gnl|tetNig1|chr1 (6979159-6979034) | |
| 344-457, gnl|tetNig1|chrUn_random (168631970-168632080) | |
| 344-457, gnl|xenTro1|scaffold_379 (669885-669752) | |
| 535-643, gnl|bosTau2|chr15 (50441601-50441493) | |
| 535-643, gnl|canFam2|chr18 (41548542-41548412) | |
| 535-643, gnl|canFam2|chr18 (41548534-41548452) | |
| 535-643, gnl|danRer3|chrUn (147404974-147404852) | |
| 535-643, gnl|danRer3|chrUn (147404966-147404884) | |
| 535-643, gnl|dasNov1|scaffold_16172 (8089-8219) | |
| 535-643, gnl|dasNov1|scaffold_16172 (8097-8179) | |
| 535-643, gnl|echTel1|scaffold_292965 (97107-96977) | |
| 535-643, gnl|echTel1|scaffold_292965 (97099-97017) | |
| 535-643, gnl|fr1|chrUn (235991306-235991177) | |
| 535-643, gnl|fr1|chrUn (271825129-271825047) | |
| 535-643, gnl|galGal2|chr5 (14262238-14262113) | |
| 535-643, gnl|galGal2|chr5 (14262230-14262148) | |
| 535-643, gnl|hg17|chr11 (57262705-57262835) | |
| 535-643, gnl|Hg17|chr11 (57262712-57262820) | |
| 535-643, gnl|hg17|chr9 (37875939-37876021) | |
| 535-643, gnl|mm7|chr17 (85381155-85381237) | |
| 535-643, gnl|mm7|chr2 (84517331-84517202) | |
| 535-643, gnl|Mm7|chr2 (84517322-84517214) | |
| 535-643, gnl|monDom2|scaffold_33 (20847659-20847789) | |
| 535-643, gnl|monDom2|scaffold_33 (20847667-20847749) | |
| 535-643, gnl|oryCun1|scaffold_211845 (43752-43622) | |
| 535-643, gnl|oryCun1|scaffold_211845 (43744-43662) | |
| 535-643, gnl|panTro1|chr11 (38607479-38607561) | |
| 535-643, gnl|panTro1|chr9 (58171715-58171845) | |
| 535-643, gnl|rheMac2|chr14 (15673713-15673583) | |
| 535-643, gnl|rheMac2|chr14 (15673705-15673623) | |
| 535-643, gnl|rn3|chr3 (67778601-67778472) | |
| 535-643, gnl|rn3|chr3 (67778593-67778511) | |
| 535-643, gnl|tetNig1|chr1 (6978609-6978479) | |
| 535-643, gnl|tetNig1|chrUn_random (168632313-168632395) | |
| 535-643, gnl|xenTro1|scaffold_379 (648549-648431) | |
| 827-1671, gnl|bosTau2|chr15 (50440367-50439508) | |
| 827-1671, gnl|Hg17|chr11 (57264136-57265014) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-282, gnl|bosTau2|chr15 (50448023-50447739) | |
| 3-282, gnl|Hg17|chr11 (57236579-57236855) | |
| 3-282, gnl|Mm7|chr2 (84521846-84521567) | |
| 344-457, gnl|bosTau2|chr15 (50442775-50442662) | |
| 344-457, gnl|canFam2|chr18 (41549445-41549320) | |
| 344-457, gnl|canFam2|chr18 (41549442-41549332) | |
| 344-457, gnl|danRer3|chrUn (147408537-147408412) | |
| 344-457, gnl|danRer3|chrUn (147408534-147408424) | |
| 344-457, gnl|dasNov1|scaffold_16172 (7383-7516) | |
| 344-457, gnl|dasNov1|scaffold_16172 (7386-7496) | |
| 344-457, gnl|echTel1|scaffold_292965 (97795-97662) | |
| 344-457, gnl|echTel1|scaffold_292965 (97792-97682) | |
| 344-457, gnl|fr1|chrUn (235991889-235991765) | |
| 344-457, gnl|fr1|chrUn (271825501-271825391) | |
| 344-457, gnl|galGal2|chr5 (14262798-14262673) | |
| 344-457, gnl|galGal2|chr5 (14262795-14262685) | |
| 344-457, gnl|hg17|chr11 (57261959-57262092) | |
| 344-457, gnl|Hg17|chr11 (57261961-57262074) | |
| 344-457, gnl|hg17|chr9 (37875743-37875853) | |
| 344-457, gnl|loxAfr1|scaffold_15132 (21671-21538) | |
| 344-457, gnl|loxAfr1|scaffold_15132 (21668-21558) | |
| 344-457, gnl|mm7|chr17 (85380964-85381074) | |
| 344-457, gnl|mm7|chr2 (84519578-84519446) | |
| 344-457, gnl|Mm7|chr2 (84519574-84519461) | |
| 344-457, gnl|monDom2|scaffold_33 (20844422-20844553) | |
| 344-457, gnl|monDom2|scaffold_33 (20844425-20844535) | |
| 344-457, gnl|oryCun1|scaffold_211845 (44455-44326) | |
| 344-457, gnl|oryCun1|scaffold_211845 (44452-44342) | |
| 344-457, gnl|panTro1|chr11 (38607279-38607389) | |
| 344-457, gnl|panTro1|chr9 (58170964-58171097) | |
| 344-457, gnl|rheMac2|chr14 (15674465-15674335) | |
| 344-457, gnl|rheMac2|chr14 (15674462-15674352) | |
| 344-457, gnl|rn3|chr3 (67780565-67780433) | |
| 344-457, gnl|rn3|chr3 (67780562-67780452) | |
| 344-457, gnl|tetNig1|chr1 (6979159-6979034) | |
| 344-457, gnl|tetNig1|chrUn_random (168631970-168632080) | |
| 344-457, gnl|xenTro1|scaffold_379 (669885-669752) | |
| 535-643, gnl|bosTau2|chr15 (50441601-50441493) | |
| 535-643, gnl|canFam2|chr18 (41548542-41548412) | |
| 535-643, gnl|canFam2|chr18 (41548534-41548452) | |
| 535-643, gnl|danRer3|chrUn (147404974-147404852) | |
| 535-643, gnl|danRer3|chrUn (147404966-147404884) | |
| 535-643, gnl|dasNov1|scaffold_16172 (8089-8219) | |
| 535-643, gnl|dasNov1|scaffold_16172 (8097-8179) | |
| 535-643, gnl|echTel1|scaffold_292965 (97107-96977) | |
| 535-643, gnl|echTel1|scaffold_292965 (97099-97017) | |
| 535-643, gnl|fr1|chrUn (235991306-235991177) | |
| 535-643, gnl|fr1|chrUn (271825129-271825047) | |
| 535-643, gnl|galGal2|chr5 (14262238-14262113) | |
| 535-643, gnl|galGal2|chr5 (14262230-14262148) | |
| 535-643, gnl|hg17|chr11 (57262705-57262835) | |
| 535-643, gnl|Hg17|chr11 (57262712-57262820) | |
| 535-643, gnl|hg17|chr9 (37875939-37876021) | |
| 535-643, gnl|mm7|chr17 (85381155-85381237) | |
| 535-643, gnl|mm7|chr2 (84517331-84517202) | |
| 535-643, gnl|Mm7|chr2 (84517322-84517214) | |
| 535-643, gnl|monDom2|scaffold_33 (20847659-20847789) | |
| 535-643, gnl|monDom2|scaffold_33 (20847667-20847749) | |
| 535-643, gnl|oryCun1|scaffold_211845 (43752-43622) | |
| 535-643, gnl|oryCun1|scaffold_211845 (43744-43662) | |
| 535-643, gnl|panTro1|chr11 (38607479-38607561) | |
| 535-643, gnl|panTro1|chr9 (58171715-58171845) | |
| 535-643, gnl|rheMac2|chr14 (15673713-15673583) | |
| 535-643, gnl|rheMac2|chr14 (15673705-15673623) | |
| 535-643, gnl|rn3|chr3 (67778601-67778472) | |
| 535-643, gnl|rn3|chr3 (67778593-67778511) | |
| 535-643, gnl|tetNig1|chr1 (6978609-6978479) | |
| 535-643, gnl|tetNig1|chrUn_random (168632313-168632395) | |
| 535-643, gnl|xenTro1|scaffold_379 (648549-648431) | |
| 827-1671, gnl|bosTau2|chr15 (50440367-50439508) | |
| 827-1671, gnl|Hg17|chr11 (57264136-57265014) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cov (0.528611) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| med (0.232504) | |
| cty (0.20816) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| med (0.232504) | |
| cty (0.20816) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| spc (0.113366) |