Non-Coding RNA Search

Ss1.1-Pig4-TMW8060L07.3

Sequence:


               
               GCGGCCGCTGAGTATCCACCCGACCAAGACCGCCGCAAGCGGCGCCCGGGACACTGGGTC
CTCCCCTGGGACGCCAGGGGGGACTCCCGAAAATTGGGCCATGCGGTTCGGTGAAGGTTT
GCGACGCGGGACTCACCTCCATTCTCTTCCTTCACTCTTCCCCCACCGCCTACAGCAGGT
CGGACTCACGAGAAAACTTCAATCAGCATCACAAACATGAGCCAAAAGCACATACCCACT
CACCCACTCACCCACCCCCAAGTGTGCGCCTGCGCCCGCAAGCGTGCACGCGCACATCAC
ACACACACGCACACACACGTGAACAGCAACTGCAACATTGTGTCCATGACTGCGCTGGGC
GCTGCCCGACCGGGCTGGCGTTCCAGGCTGCAAAACACAAATACATTTTTTAAAAATCAT
GAAAGTTAAAAAGACAAAAAAACACAGAATTCATTGATAATTCTAACTCAGACTTTAACA
ATGGCAGAAGTTTACTATGCGCAGATACTGTGAAATGCCCACCAGTGTTACAGCTTTCTG
TTCTAGCAGATGAATGCCATGTTGGGCAACTATGTCATAGATTTCTGCTCCTCTCTTTTA
ATGAAATAACGTGACCGTTAACGCAAGTAACTCTTTATTTATTGTTCATCTTTTTTTCCT
TAAGGAAAGGACTCTTCCACATCCCATTCTCTGAACAGCTCTTCAGAAAGCCCCTTGACA
GTTAAACTATTTAACGTGAAATCCATTAACTGGAATAATTGAGTTTCTTTATTTTTACAA
TAAATTCACTGAGTAAATAAGTTGGAGCTGGAATTCTGAGCTTTGTGTTTGGACTGTTTG
ATCTCTAGCTAAAGGAAGAATTTAAGAGGGGAATATTTATTTAAATCTACCAGTTAATTT
GTTGTTAGGTCTCTGGCCTATAACATGCAAAAAAGTAATTAGTTTAAACAAGCCCTTCCA
GATCCTAACTTCTAAAAGCAACCAGGAGAGGAACTTTTAGAATGGCACATCCTGTCCCAT
TGGTGCCAACATGGCTTTGTCAGTGGTTCCTACTTTCTGTGAAGGCACCAGCTTGTGATA
TGCCATCTCATTTCACCTTGCATGTGAGACAGCAAACAAAATCCACCAATGGTGTGAATT
AATTAATATGCTGGCTGCTACCTTGCATAAATTAATGGTTTGATCACATGGGGTTTTCGT
GGGGTTACATCTGTGAATAGCCTGTTTTCCACATGTAAATTTGTGCCTTACACCCTGAGT
TGTGTACACTTGTAAACTGTCAGTATGATAAACTTTTCCCCCTTTTGAAATAAATGCCGA
TATTTATTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGAGTATCCACCCGACCAAGACCGCCGCAAGCGGCGCCCGGGACACTGGGTC
CTCCCCTGGGACGCCAGGGGGGACTCCCGAAAATTGGGCCATGCGGTTCGGTGAAGGTTT
GCGACGCGGGACTCACCTCCATTCTCTTCCTTCACTCTTCCCCCACCGCCTACAGCAGGT
CGGACTCACGAGAAAACTTCAATCAGCATCACAAACATGAGCCAAAAGCACATACCCACT
CACCCACTCACCCACCCCCAAGTGTGCGCCTGCGCCCGCAAGCGTGCACGCGCACATCAC
ACACACACGCACACACACGTGAACAGCAACTGCAACATTGTGTCCATGACTGCGCTGGGC
GCTGCCCGACCGGGCTGGCGTTCCAGGCTGCAAAACACAAATACATTTTTTAAAAATCAT
GAAAGTTAAAAAGACAAAAAAACACAGAATTCATTGATAATTCTAACTCAGACTTTAACA
ATGGCAGAAGTTTACTATGCGCAGATACTGTGAAATGCCCACCAGTGTTACAGCTTTCTG
TTCTAGCAGATGAATGCCATGTTGGGCAACTATGTCATAGATTTCTGCTCCTCTCTTTTA
ATGAAATAACGTGACCGTTAACGCAAGTAACTCTTTATTTATTGTTCATCTTTTTTTCCT
TAAGGAAAGGACTCTTCCACATCCCATTCTCTGAACAGCTCTTCAGAAAGCCCCTTGACA
GTTAAACTATTTAACGTGAAATCCATTAACTGGAATAATTGAGTTTCTTTATTTTTACAA
TAAATTCACTGAGTAAATAAGTTGGAGCTGGAATTCTGAGCTTTGTGTTTGGACTGTTTG
ATCTCTAGCTAAAGGAAGAATTTAAGAGGGGAATATTTATTTAAATCTACCAGTTAATTT
GTTGTTAGGTCTCTGGCCTATAACATGCAAAAAAGTAATTAGTTTAAACAAGCCCTTCCA
GATCCTAACTTCTAAAAGCAACCAGGAGAGGAACTTTTAGAATGGCACATCCTGTCCCAT
TGGTGCCAACATGGCTTTGTCAGTGGTTCCTACTTTCTGTGAAGGCACCAGCTTGTGATA
TGCCATCTCATTTCACCTTGCATGTGAGACAGCAAACAAAATCCACCAATGGTGTGAATT
AATTAATATGCTGGCTGCTACCTTGCATAAATTAATGGTTTGATCACATGGGGTTTTCGT
GGGGTTACATCTGTGAATAGCCTGTTTTCCACATGTAAATTTGTGCCTTACACCCTGAGT
TGTGTACACTTGTAAACTGTCAGTATGATAAACTTTTCCCCCTTTTGAAATAAATGCCGA
TATTTATTTAAC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               7-118, - strand, RNAz p=0.623769
               

               
               196-307, - strand, RNAz p=0.999294
               

               
               312-433, - strand, RNAz p=0.999185
               

               
               474-743, - strand, RNAz p=0.973873

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-118, - strand, RNAz p=0.623769
               

               
               196-307, - strand, RNAz p=0.999294
               

               
               312-433, - strand, RNAz p=0.999185
               

               
               474-743, - strand, RNAz p=0.973873

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1329, gnl|bosTau2|chr7 (25544841-25543516)
               

               
               7-1329, gnl|Hg17|chr5 (115810131-115808819)
               

               
               7-1329, gnl|Mm7|chr18 (47625794-47624378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1329, gnl|bosTau2|chr7 (25544841-25543516)
               

               
               7-1329, gnl|Hg17|chr5 (115810131-115808819)
               

               
               7-1329, gnl|Mm7|chr18 (47625794-47624378)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.508733)
               

               
               sin (0.174948)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               sin (0.174948)
               

               
               eru (0.120048)

	7-118, - strand, RNAz p=0.623769
	196-307, - strand, RNAz p=0.999294
	312-433, - strand, RNAz p=0.999185
	474-743, - strand, RNAz p=0.973873

	7-1329, gnl\|bosTau2\|chr7 (25544841-25543516)
	7-1329, gnl\|Hg17\|chr5 (115810131-115808819)
	7-1329, gnl\|Mm7\|chr18 (47625794-47624378)