Non-Coding RNA Search

Ss1.1-Pig4-TMW8060L10.5

Sequence:


               
               GAAATATAGACAGACGTACCCCAAGGAGTGGCTAATCTGTGCAGTCTGAGGGAGCAGACC
CTACAAGACAGCCCTCACTGGAGACACTGGCCACAGATTTGGGGGCTCGGGACCATCCTC
ACATCAGATCAGCTGGCTACAAATTCAGGGTCCCCACAACTACCTGCAGGTTTGAGAATC
ACTAGAATGACTCACAGAATTCCAGGAAGCACTGGGCTATGGTTATAATTGTTTTTAATT
TATTTTATTGAAGTATCGTTGATTTATAATGTATTCATTTCTGCTGTACAGTGAAGTGAT
TCAGAGAGATGCACACACACACACACACACACGCACACATATTGTCATATTTTCCATTAT
GGTTTATCACAGGATATTGAGTATAGTTCCCTGTGCTATGGAGTAGGACCTTGTCGTTTA
CCCATTCCCTATAAAATAGTTGGCATCTGTCCCTGCTAGACTCCCAGTCCATCTCTCCCT
CACCCCACTCCCCCTTGGCAGCCACAGGTCTGTTCTCTATGTCTGTGAATGTTTCTATTT
CATAGATAAGTTCATTTGTGCCCCTTTTTAGCCACATATAAATGACATCACGCGGTATTT
TCTTTCTCTTTCTGACGTACTTCACTGTGTTTTTATAACAGGGCCTGGTTTATGATCTAT
GTTCATCTGTGTTTCTGTGGTTATAGTTGTAATGTAGGGAAAAGATGCAAAATATAAAAC
CAGCCGAAAGAAGAGACTTATAGGGTGGAATCTGGGAGTCTGCCTAAAGAGAAGCTTCTA
TTGTGCTCAGGAAGCACATTACCTTCCCACATCAGTGTGTGGCCAGGCATGCTGAGTATT
GCCCAACTGGAAAATTGACCCAGGCTCTGACGTCCAGAGTGTTTATTGAGGCTCCACTAC
ATGGGCTTGATTGGATTATTGCCCGTTTGGTTGAACTCAGTTTCCAGCCCTCCTTTTCTC
TGGATATCACGTGGCCCAAATCCCAGGCTTCTAATCACTCCCGTAGTTGGTCTTTCAGTT
GTGGCCAGGCCCCACTTTGAGGTTCTCTCCTTCGTATAAACCATCTGCTCTTGCCCAGGG
ACCTGCCATGAATTACAAAGACACGCCTACTACTGGGGAAATGCCAACAGTTTAGAGGTT
GCCTCCTTGGAGCCTGAGCAAAGGCCAGACCACTCTTTCAAGGCCAAATTCCTTGCTACA
CAGATATAAGAATAAATAGGTTTTGTTTTTTTGTTTTTTGTTTTACTATAACCTATGTGT
TTCATACCACGTCATATTTTTTAATAGAGCACCTTGAGTTCTGCAAACTAAAGAAAAAAC
TCGACTTCATTGTTTTTTCTTAGTAATGTAACCATTACTAACCAGTGTGTTAAAGTATAT
AGAAAGTTTATAACTTATTTTATGCATGTTAATTTTAATTGTCATAATAACCACAGAGAT
------------------------------------------------------------
CAAGATCCCACAACTTGGTAAGCAGTGGAGCCAGGATTCCTGATCCAGGAGTCAAGCTGC
AGGGTCCCTGCTCTTAATCACTCCTACCCTCTCACTGTACGTCCAGAAGGAAAAAGCATC
AACCCTCAATAGTGCCCAGAGACAGTCAGTGTTTTTATAACAGGGACTGATCTTTCCAAT
CTGTTTCCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATATAGACAGACGTACCCCAAGGAGTGGCTAATCTGTGCAGTCTGAGGGAGCAGACC
CTACAAGACAGCCCTCACTGGAGACACTGGCCACAGATTTGGGGGCTCGGGACCATCCTC
ACATCAGATCAGCTGGCTACAAATTCAGGGTCCCCACAACTACCTGCAGGTTTGAGAATC
ACTAGAATGACTCACAGAATTCCAGGAAGCACTGGGCTATGGTTATAATTGTTTTTAATT
TATTTTATTGAAGTATCGTTGATTTATAATGTATTCATTTCTGCTGTACAGTGAAGTGAT
TCAGAGAGATGCACACACACACACACACACACGCACACATATTGTCATATTTTCCATTAT
GGTTTATCACAGGATATTGAGTATAGTTCCCTGTGCTATGGAGTAGGACCTTGTCGTTTA
CCCATTCCCTATAAAATAGTTGGCATCTGTCCCTGCTAGACTCCCAGTCCATCTCTCCCT
CACCCCACTCCCCCTTGGCAGCCACAGGTCTGTTCTCTATGTCTGTGAATGTTTCTATTT
CATAGATAAGTTCATTTGTGCCCCTTTTTAGCCACATATAAATGACATCACGCGGTATTT
TCTTTCTCTTTCTGACGTACTTCACTGTGTTTTTATAACAGGGCCTGGTTTATGATCTAT
GTTCATCTGTGTTTCTGTGGTTATAGTTGTAATGTAGGGAAAAGATGCAAAATATAAAAC
CAGCCGAAAGAAGAGACTTATAGGGTGGAATCTGGGAGTCTGCCTAAAGAGAAGCTTCTA
TTGTGCTCAGGAAGCACATTACCTTCCCACATCAGTGTGTGGCCAGGCATGCTGAGTATT
GCCCAACTGGAAAATTGACCCAGGCTCTGACGTCCAGAGTGTTTATTGAGGCTCCACTAC
ATGGGCTTGATTGGATTATTGCCCGTTTGGTTGAACTCAGTTTCCAGCCCTCCTTTTCTC
TGGATATCACGTGGCCCAAATCCCAGGCTTCTAATCACTCCCGTAGTTGGTCTTTCAGTT
GTGGCCAGGCCCCACTTTGAGGTTCTCTCCTTCGTATAAACCATCTGCTCTTGCCCAGGG
ACCTGCCATGAATTACAAAGACACGCCTACTACTGGGGAAATGCCAACAGTTTAGAGGTT
GCCTCCTTGGAGCCTGAGCAAAGGCCAGACCACTCTTTCAAGGCCAAATTCCTTGCTACA
CAGATATAAGAATAAATAGGTTTTGTTTTTTTGTTTTTTGTTTTACTATAACCTATGTGT
TTCATACCACGTCATATTTTTTAATAGAGCACCTTGAGTTCTGCAAACTAAAGAAAAAAC
TCGACTTCATTGTTTTTTCTTAGTAATGTAACCATTACTAACCAGTGTGTTAAAGTATAT
AGAAAGTTTATAACTTATTTTATGCATGTTAATTTTAATTGTCATAATAACCACAGAGAT
------------------------------------------------------------
CAAGATCCCACAACTTGGTAAGCAGTGGAGCCAGGATTCCTGATCCAGGAGTCAAGCTGC
AGGGTCCCTGCTCTTAATCACTCCTACCCTCTCACTGTACGTCCAGAAGGAAAAAGCATC
AACCCTCAATAGTGCCCAGAGACAGTCAGTGTTTTTATAACAGGGACTGATCTTTCCAAT
CTGTTTCCTATG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               214-626, gnl|bosTau2|chr1 (96136717-96136315)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-626, gnl|bosTau2|chr1 (96136717-96136315)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)