Non-Coding RNA Search

Ss1.1-Pig4-TMW8060L13.3

Sequence:


               
               CGCACGACTGCACGCTGCCGGGCCCTGCTCTCCCGCTGCCATGGGGCCCCGCACTCCTGT
CCTCATCCTGGTCCTTTTGTCGTGGTCGGGACCCATTCAAGGACAGCAGCAGCACCTTGT
GGAGTACATGGAACGCCGACTAGCTGCTTTAGAGGAACGGCTGGCCCAGTGCCAAGACCA
GAGTAGTCGGCACGCTGCTGAGCTGCGCGACTTCAAGAACAAGATGCTGCCGCTGCTGGA
GGTGGCCGAGAAGGAGCGGGAGGCGCTGAGAACTGAGGCTGACACCATTGCGGGGAGAGT
GGACCGTCTGGAGCGGGAGGTGGACTATCTGGAGACCCAGAACCCAGCCTCACCCTGTGT
GGAGGTTGATGAGAAGGTGACCGGAGGCCCTGGGACCAAAGGCAAGGGCAGAAGAAGAAA
TGAGAAGTACGACATGGTGACAGACTGTGGCTACACAATCTCTCAGGTGAGATCAATGAA
GATCCTGAAGCGGTTCGGTGGCCCAGCTGGTCTATGGACCAAGGATCCACTGGGGCCCAC
AGAGAAGATCTTCGTGTTAGATGGGACCCAGAATGACACGGCCTTTGTCTTCCCAAGGCT
GCGTGACTTCACCCTTGCCATGGCTGCCCGGAAAGCTTCCCGAATCCGGGTGCCCTTCCC
CTGGGTAGGCACGGGCCAGCTGGTATATGGTGGCTTTCTTTATTATGCCCGGAGGCCCCC
TGGAGGACCCGGCGGGGGTGGTGACTTGGAGAACACTTTGCAGCTCATCAAATTCCACCT
GGCAAACCGCACAGTGGTGGACAGTTCGGTGTTCCCAGCAGAGGGTTTGATCCCCCCGTA
CGGGCTGACGGCAGACACGTACATAGACCTGGCGGCTGATGAGGAGGGCCTTTGGGCTGT
CTATGCCACCCGGGAGGATGACAGGCACCTGTGTCTGGCCAAGTTAGACCCACAGACACT
GGACACAGAGCAGCAGTGGGACACGCCGTGTCCCAGAGAGAATGCGGAGGCTGCCTTTGT
CATCTGTGGGACCCTGTATGTCGTCTATAATACTCGCCCGGCCAGTCGGGCCCGCATCCA
GTGCTCCTTTGATGCCAGCGGCACCCTGACCCCTGAGAGGGCAGCACTGCCTTATTTCCC
CCGCCGATATGGTGCCCATGCCAGCCTCCGCTATAACCCCCGAGAGCGCCAGCTCTACGC
CTGGGATGATGGCTACCAGATTGTCTATAAGCTGGAGATGAGGAAGAAAGAGGAAGAAGT
GTGAGGGAGCTGGTCTTTGTTTTCTGAATCTCCTTCGCCTCCATCCATTTCTATCCCTCC
CAAAGTTTCTGCTCCTCATTCTCCAGATGTGCGCGAGTTGCGATTCAGATCTCCTCTTTT
TAGCCAATGGAAACCAAACTCTCATTGCCCCCTCATTTCACATGGGACTCCAGATCTTGA
GGAATCCCTTTGGAGCTGAGAGAGAGAGAAAGCCCGCAGCAATTCATTCCTGCTCTCCTG
CCCCCTATCGAAGAATTTCAAGCCAGTGAAAGATGACTCAGACCCAGAGCTCTGACCCTT
GTAGGGGGGCGACCCTGGTGAACAGGCCACAGATTCTTTTTTGCACAGTGTGAGTCAGGG
GAGAGAGGGCTGGGAGGAGACTTTGAACTCGGCCCCTCTCTCCTTTCTCCCTTCAGTGCC
CTAAAGAAGGAGACTCGAGACTCGGTTTGTACTGCGGCATTTTGCATTAAAAGGAAAATC
TTCTGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACGACTGCACGCTGCCGGGCCCTGCTCTCCCGCTGCCATGGGGCCCCGCACTCCTGT
CCTCATCCTGGTCCTTTTGTCGTGGTCGGGACCCATTCAAGGACAGCAGCAGCACCTTGT
GGAGTACATGGAACGCCGACTAGCTGCTTTAGAGGAACGGCTGGCCCAGTGCCAAGACCA
GAGTAGTCGGCACGCTGCTGAGCTGCGCGACTTCAAGAACAAGATGCTGCCGCTGCTGGA
GGTGGCCGAGAAGGAGCGGGAGGCGCTGAGAACTGAGGCTGACACCATTGCGGGGAGAGT
GGACCGTCTGGAGCGGGAGGTGGACTATCTGGAGACCCAGAACCCAGCCTCACCCTGTGT
GGAGGTTGATGAGAAGGTGACCGGAGGCCCTGGGACCAAAGGCAAGGGCAGAAGAAGAAA
TGAGAAGTACGACATGGTGACAGACTGTGGCTACACAATCTCTCAGGTGAGATCAATGAA
GATCCTGAAGCGGTTCGGTGGCCCAGCTGGTCTATGGACCAAGGATCCACTGGGGCCCAC
AGAGAAGATCTTCGTGTTAGATGGGACCCAGAATGACACGGCCTTTGTCTTCCCAAGGCT
GCGTGACTTCACCCTTGCCATGGCTGCCCGGAAAGCTTCCCGAATCCGGGTGCCCTTCCC
CTGGGTAGGCACGGGCCAGCTGGTATATGGTGGCTTTCTTTATTATGCCCGGAGGCCCCC
TGGAGGACCCGGCGGGGGTGGTGACTTGGAGAACACTTTGCAGCTCATCAAATTCCACCT
GGCAAACCGCACAGTGGTGGACAGTTCGGTGTTCCCAGCAGAGGGTTTGATCCCCCCGTA
CGGGCTGACGGCAGACACGTACATAGACCTGGCGGCTGATGAGGAGGGCCTTTGGGCTGT
CTATGCCACCCGGGAGGATGACAGGCACCTGTGTCTGGCCAAGTTAGACCCACAGACACT
GGACACAGAGCAGCAGTGGGACACGCCGTGTCCCAGAGAGAATGCGGAGGCTGCCTTTGT
CATCTGTGGGACCCTGTATGTCGTCTATAATACTCGCCCGGCCAGTCGGGCCCGCATCCA
GTGCTCCTTTGATGCCAGCGGCACCCTGACCCCTGAGAGGGCAGCACTGCCTTATTTCCC
CCGCCGATATGGTGCCCATGCCAGCCTCCGCTATAACCCCCGAGAGCGCCAGCTCTACGC
CTGGGATGATGGCTACCAGATTGTCTATAAGCTGGAGATGAGGAAGAAAGAGGAAGAAGT
GTGAGGGAGCTGGTCTTTGTTTTCTGAATCTCCTTCGCCTCCATCCATTTCTATCCCTCC
CAAAGTTTCTGCTCCTCATTCTCCAGATGTGCGCGAGTTGCGATTCAGATCTCCTCTTTT
TAGCCAATGGAAACCAAACTCTCATTGCCCCCTCATTTCACATGGGACTCCAGATCTTGA
GGAATCCCTTTGGAGCTGAGAGAGAGAGAAAGCCCGCAGCAATTCATTCCTGCTCTCCTG
CCCCCTATCGAAGAATTTCAAGCCAGTGAAAGATGACTCAGACCCAGAGCTCTGACCCTT
GTAGGGGGGCGACCCTGGTGAACAGGCCACAGATTCTTTTTTGCACAGTGTGAGTCAGGG
GAGAGAGGGCTGGGAGGAGACTTTGAACTCGGCCCCTCTCTCCTTTCTCCCTTCAGTGCC
CTAAAGAAGGAGACTCGAGACTCGGTTTGTACTGCGGCATTTTGCATTAAAAGGAAAATC
TTCTGCAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               OLFL3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               OLFL3_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               442-560, - strand, RNAz p=0.830227
               

               
               881-1040, - strand, RNAz p=0.961224
               

               
               1585-1700, + strand, RNAz p=0.933899

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-560, - strand, RNAz p=0.830227
               

               
               881-1040, - strand, RNAz p=0.961224
               

               
               1585-1700, + strand, RNAz p=0.933899

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK092766, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK092766, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-155, gnl|bosTau2|chr3 (27181779-27181629)
               

               
               5-155, gnl|Hg17|chr1 (114234137-114234295)
               

               
               5-155, gnl|Mm7|chr3 (103531957-103531805)
               


               
               442-1746, gnl|bosTau2|chr3 (27180107-27178816)
               

               
               442-1746, gnl|Hg17|chr1 (114235611-114236916)
               

               
               442-1746, gnl|Mm7|chr3 (103530649-103529380)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-155, gnl|bosTau2|chr3 (27181779-27181629)
               

               
               5-155, gnl|Hg17|chr1 (114234137-114234295)
               

               
               5-155, gnl|Mm7|chr3 (103531957-103531805)
               


               
               442-1746, gnl|bosTau2|chr3 (27180107-27178816)
               

               
               442-1746, gnl|Hg17|chr1 (114235611-114236916)
               

               
               442-1746, gnl|Mm7|chr3 (103530649-103529380)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cty (1.14488)
               

               
               eep (0.490256)
               

               
               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (1.14488)
               

               
               eep (0.490256)
               

               
               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	442-560, - strand, RNAz p=0.830227
	881-1040, - strand, RNAz p=0.961224
	1585-1700, + strand, RNAz p=0.933899

	5-155, gnl\|bosTau2\|chr3 (27181779-27181629)
	5-155, gnl\|Hg17\|chr1 (114234137-114234295)
	5-155, gnl\|Mm7\|chr3 (103531957-103531805)

	442-1746, gnl\|bosTau2\|chr3 (27180107-27178816)
	442-1746, gnl\|Hg17\|chr1 (114235611-114236916)
	442-1746, gnl\|Mm7\|chr3 (103530649-103529380)

	cty (1.14488)
	eep (0.490256)
	elu (0.385356)
	mcp (0.341297)
	cli (0.305623)
	pty (0.285429)
	cov (0.264306)
	eru (0.240096)
	mas (0.210305)
	nbm (0.198649)
	eje (0.197668)
	nep (0.183925)
	ton (0.1755)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	cbl (0.114797)
	jca (0.11396)
	jej (0.0989218)