Non-Coding RNA Search

Ss1.1-Pig4-TMW8060M01.3

Sequence:


               
               AAATGGCAAAAAGACAAAAAAAAAAAAAAAAAAAATTTACAAAACTAAATGAGTTTAGAA
GAAATTTAACTTTCAGGTGATGTTTTGTAAGTGTGTAGCATTTATACTCCTACAAATATC
AAAGCTTAAAATTGTGCTAAGACTTCAAGGGATACCTTATATCTTTATAGACCTGCCCTC
CTCTTTTAAAAACAGTTCTTGGCAGGGCTGGGCTGTTTACCTGCTTTGGTCACCTAAGTT
TCATTTTTCTAGATTGGATAAAGGAATTATGAAGAACAGTGTTAACAAATTGAAAGGAAT
TGGACCCTGATAGTAGTAGTGATATGAAAATAAGGAACATGAAACAGCTTTTCTATCCTA
TGTATTTAACCTGGTTGTAGGCATCTCATTTCAAGTTCTGCCATTGGAGAGGAAACATAG
AAATCTTAAGAACCCTTATTTACCTCAGACTTTAAAAGGCAGGGAGGGCTAAAAAAATCT
TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAGGCAGGGAGGTCTAGTAATCAGTCTTTT
AGGAGATTGGTAATGATGTCACCTAAACTTGAAATATTTAAAAAAAGATTAGTGTTCTCA
ACTATGTGAAATCTTTCTCCTCCTGCCTTCTCAAATGTAATCCTAGGAATTTTGCCTGTA
AACAAAGCATTTCGGGGCCTGGAATACTTTCTCTCTTTATAGAAAGGCTTCACATTATGT
TAAGTGCTGCAGTTCCATCATTTTTAAAGGACAGAGACTTAAATGATAAAAATGGCATAT
AAAATGTTATCTACCACCTCAAAAAATATTGTTTATGGAGCTTGGAGATTCAAACATTGA
TTGCAGTTTTTATTACAATCTACCACCTCAAAAAATAATTGTTTATGGAGCTTGGAGATT
CAAATGTTGATTGCAGTTTTATTTTGAAAAGAATGCTACAACTTATGTGGTTTTTCTTTC
TCATGTTTATATTAAAAGAAAAGCTAATAAACTCTATTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGCAAAAAGACAAAAAAAAAAAAAAAAAAAATTTACAAAACTAAATGAGTTTAGAA
GAAATTTAACTTTCAGGTGATGTTTTGTAAGTGTGTAGCATTTATACTCCTACAAATATC
AAAGCTTAAAATTGTGCTAAGACTTCAAGGGATACCTTATATCTTTATAGACCTGCCCTC
CTCTTTTAAAAACAGTTCTTGGCAGGGCTGGGCTGTTTACCTGCTTTGGTCACCTAAGTT
TCATTTTTCTAGATTGGATAAAGGAATTATGAAGAACAGTGTTAACAAATTGAAAGGAAT
TGGACCCTGATAGTAGTAGTGATATGAAAATAAGGAACATGAAACAGCTTTTCTATCCTA
TGTATTTAACCTGGTTGTAGGCATCTCATTTCAAGTTCTGCCATTGGAGAGGAAACATAG
AAATCTTAAGAACCCTTATTTACCTCAGACTTTAAAAGGCAGGGAGGGCTAAAAAAATCT
TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAGGCAGGGAGGTCTAGTAATCAGTCTTTT
AGGAGATTGGTAATGATGTCACCTAAACTTGAAATATTTAAAAAAAGATTAGTGTTCTCA
ACTATGTGAAATCTTTCTCCTCCTGCCTTCTCAAATGTAATCCTAGGAATTTTGCCTGTA
AACAAAGCATTTCGGGGCCTGGAATACTTTCTCTCTTTATAGAAAGGCTTCACATTATGT
TAAGTGCTGCAGTTCCATCATTTTTAAAGGACAGAGACTTAAATGATAAAAATGGCATAT
AAAATGTTATCTACCACCTCAAAAAATATTGTTTATGGAGCTTGGAGATTCAAACATTGA
TTGCAGTTTTTATTACAATCTACCACCTCAAAAAATAATTGTTTATGGAGCTTGGAGATT
CAAATGTTGATTGCAGTTTTATTTTGAAAAGAATGCTACAACTTATGTGGTTTTTCTTTC
TCATGTTTATATTAAAAGAAAAGCTAATAAACTCTATTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               509-626, + strand, RNAz p=0.864379

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-626, + strand, RNAz p=0.864379

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               32-331, gnl|bosTau2|chr1 (78570801-78571116)
               

               
               32-331, gnl|Hg17|chr10 (42224160-42223875)
               


               
               509-850, gnl|bosTau2|chrX (17290785-17291132)
               

               
               509-850, gnl|Hg17|chr6 (15954649-15954310)
               


               
               851-1014, gnl|bosTau2|chrX (43390863-43391024)
               

               
               851-1014, gnl|Hg17|chr6 (15954388-15954230)
               

               
               851-1014, gnl|Mm7|chr7 (100555602-100555437)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-331, gnl|bosTau2|chr1 (78570801-78571116)
               

               
               32-331, gnl|Hg17|chr10 (42224160-42223875)
               


               
               509-850, gnl|bosTau2|chrX (17290785-17291132)
               

               
               509-850, gnl|Hg17|chr6 (15954649-15954310)
               


               
               851-1014, gnl|bosTau2|chrX (43390863-43391024)
               

               
               851-1014, gnl|Hg17|chr6 (15954388-15954230)
               

               
               851-1014, gnl|Mm7|chr7 (100555602-100555437)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               sme (0.610874)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               ldo (0.291008)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               ldo (0.291008)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	32-331, gnl\|bosTau2\|chr1 (78570801-78571116)
	32-331, gnl\|Hg17\|chr10 (42224160-42223875)

	509-850, gnl\|bosTau2\|chrX (17290785-17291132)
	509-850, gnl\|Hg17\|chr6 (15954649-15954310)

	851-1014, gnl\|bosTau2\|chrX (43390863-43391024)
	851-1014, gnl\|Hg17\|chr6 (15954388-15954230)
	851-1014, gnl\|Mm7\|chr7 (100555602-100555437)

	sme (0.610874)
	tes (0.415628)
	aor (0.390549)
	col (0.390016)
	ldo (0.291008)
	jca (0.22792)
	ton (0.1755)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	eje (0.0988338)