Ss1.1-Pig4-TMW8060M02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTCCCGGGAAGTGGACTGGTAGAGGAGGGGGCCAGGTAGCTGTCGGTCTCGACCGAG TCGGAGACCCCGGCGTGAGGCGGCTTCTCAGGACCGGGTGGGCTGGCGAGCCGACGCGGC GGCGGCGGAGGCTGTGAGGAGTGCCGGGGGGCAGGGGCTCGCTCAGAAAGACCATGGCCC CGCAGAACCTGGGCACCTTCTGCCTGTTGCTGCTGTACCTCATCGGGGCCGTGATCGCCG GGCGAGATTTCTATAAGATCTTGGGGGTGCCTCGCAGCGCCTCTATAAAGGATATTAAAA AGGCCTACAGGAAACTGGCCCTGCAGCTTCATCCCGACCGGAATCCTGACGATCCTCGAG CGCAGGAGAAATTCCAGGATCTAGGTGCTGCTTATGAGGTTCTGTCAGATAGTGAGAAAC GGAAACAATATGATACTTACGGTGAAGAGGGATTAAAAGATGGACATCAGAGCTCCCATG GAGACATTTTTTCACACTTCTTTGGTGATTTTGGTTTCATGTTTGGAGGAACCCCTCGTC AGCAAGACAGAAATATTCCAAGGGGAAGTGATATTATTGTAGATCTGGAAGTCACTTTGG AAGAAGTGTATGCAGGAAATTTTGTAGAAGTGGTCAGAAACAAACCTGTGGCAAGGCAGG CGCCCGGCAAACGGAAGTGCAACTGCCGCCAGGAGATGCGAACCACCCAGCTGGGCCCTG GGCGCTTCCAGATGACCCAGGAGGTGGTCTGTGATGAGTGCCCCAATGTCAAACTAGTGA ATGAAGAACGAACTCTGGAGGTAGAAATTGAACCTGGGGTGAGAGATGGCATGGAGTACC CCTTTATTGGAGAAGGTGAGCCTCATGTGGATGGAGAGCCAGGAGACTTGCGGTTCCGAA TCAAAGTTGTCAAGCACCCAATATTTGAGAGGCGAGGCGATGACTTATACACAAACGTGA CCATCTCCCTCGTGGAGTCACTGGTGGGCTTCGACATGGATATCACGCACTTGGATGGTC ACAAGGTACATATTTCCCGGGACAAGATCACCAGACCGGGAGCCAAGCTGTGGAAAAAAG GGGAAGGGCTCCCCAACTTTGACAACAACAACATCAAGGGCTCTTTGATAATCACTTTCG ATGTGGATTTTCCAAAGGAACAGTTAACAGAGGAAGCAAGAGAAGGTATCAAACAGCTAC TGAAACAAGGGTCAGTGCAGAAAGTATACAATGGACTGCAAGGATATTAAGAGTGAATAA AATTGGACTTTGTTTCAAATAAGTGCATCGGCGATATTTATTATCTGCAGGGGTTTTTTG TGTGTGGTTTTTGTTTTTATTCTCAATATACAAGTTTGGCTTAAATTTTTTTTTTCTTCT AATGATCATCATGAAATGAATAAGAGGGCTTAAGAATTTGTCCATTTGTGTTGAGAAACG AATGACCAGCAAAAGGTTTAATAATACCTCTCCCTTTGGGGATTTATGTCTGGTGCTGCC GCCTGAGTTTCAAGAATTAAAGCTGCAAGAGGACTCCAGATGCAAAAGACACAATACAAA GGGTTGGAGTTAATTGTTAGCTATTTCATTCGAAATGCCAACTGGAGAAGTCTGTTTTTA AATACATTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTCCCGGGAAGTGGACTGGTAGAGGAGGGGGCCAGGTAGCTGTCGGTCTCGACCGAG TCGGAGACCCCGGCGTGAGGCGGCTTCTCAGGACCGGGTGGGCTGGCGAGCCGACGCGGC GGCGGCGGAGGCTGTGAGGAGTGCCGGGGGGCAGGGGCTCGCTCAGAAAGACCATGGCCC CGCAGAACCTGGGCACCTTCTGCCTGTTGCTGCTGTACCTCATCGGGGCCGTGATCGCCG GGCGAGATTTCTATAAGATCTTGGGGGTGCCTCGCAGCGCCTCTATAAAGGATATTAAAA AGGCCTACAGGAAACTGGCCCTGCAGCTTCATCCCGACCGGAATCCTGACGATCCTCGAG CGCAGGAGAAATTCCAGGATCTAGGTGCTGCTTATGAGGTTCTGTCAGATAGTGAGAAAC GGAAACAATATGATACTTACGGTGAAGAGGGATTAAAAGATGGACATCAGAGCTCCCATG GAGACATTTTTTCACACTTCTTTGGTGATTTTGGTTTCATGTTTGGAGGAACCCCTCGTC AGCAAGACAGAAATATTCCAAGGGGAAGTGATATTATTGTAGATCTGGAAGTCACTTTGG AAGAAGTGTATGCAGGAAATTTTGTAGAAGTGGTCAGAAACAAACCTGTGGCAAGGCAGG CGCCCGGCAAACGGAAGTGCAACTGCCGCCAGGAGATGCGAACCACCCAGCTGGGCCCTG GGCGCTTCCAGATGACCCAGGAGGTGGTCTGTGATGAGTGCCCCAATGTCAAACTAGTGA ATGAAGAACGAACTCTGGAGGTAGAAATTGAACCTGGGGTGAGAGATGGCATGGAGTACC CCTTTATTGGAGAAGGTGAGCCTCATGTGGATGGAGAGCCAGGAGACTTGCGGTTCCGAA TCAAAGTTGTCAAGCACCCAATATTTGAGAGGCGAGGCGATGACTTATACACAAACGTGA CCATCTCCCTCGTGGAGTCACTGGTGGGCTTCGACATGGATATCACGCACTTGGATGGTC ACAAGGTACATATTTCCCGGGACAAGATCACCAGACCGGGAGCCAAGCTGTGGAAAAAAG GGGAAGGGCTCCCCAACTTTGACAACAACAACATCAAGGGCTCTTTGATAATCACTTTCG ATGTGGATTTTCCAAAGGAACAGTTAACAGAGGAAGCAAGAGAAGGTATCAAACAGCTAC TGAAACAAGGGTCAGTGCAGAAAGTATACAATGGACTGCAAGGATATTAAGAGTGAATAA AATTGGACTTTGTTTCAAATAAGTGCATCGGCGATATTTATTATCTGCAGGGGTTTTTTG TGTGTGGTTTTTGTTTTTATTCTCAATATACAAGTTTGGCTTAAATTTTTTTTTTCTTCT AATGATCATCATGAAATGAATAAGAGGGCTTAAGAATTTGTCCATTTGTGTTGAGAAACG AATGACCAGCAAAAGGTTTAATAATACCTCTCCCTTTGGGGATTTATGTCTGGTGCTGCC GCCTGAGTTTCAAGAATTAAAGCTGCAAGAGGACTCCAGATGCAAAAGACACAATACAAA GGGTTGGAGTTAATTGTTAGCTATTTCATTCGAAATGCCAACTGGAGAAGTCTGTTTTTA AATACATTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-246, gnl|bosTau2|chr1 (54740819-54741059) | |
| 1-246, gnl|canFam2|chr34 (22193693-22194059) | |
| 1-246, gnl|dasNov1|scaffold_3916 (84940-85290) | |
| 1-246, gnl|echTel1|scaffold_288921 (67500-67835) | |
| 1-246, gnl|galGal2|chr9 (9245185-9244839) | |
| 1-246, gnl|hg17|chr3 (187771062-187771423) | |
| 1-246, gnl|Hg17|chr3 (187771209-187771461) | |
| 1-246, gnl|mm7|chr16 (22519142-22519472) | |
| 1-246, gnl|Mm7|chr16 (22519280-22519510) | |
| 1-246, gnl|monDom2|scaffold_77 (923198-923427) | |
| 1-246, gnl|oryCun1|scaffold_202439 (25389-25743) | |
| 1-246, gnl|panTro1|chr2 (191863386-191863747) | |
| 1-246, gnl|rheMac2|chr2 (100066385-100066023) | |
| 1-246, gnl|rn3|chr11 (80434577-80434247) | |
| 497-631, gnl|bosTau2|chr1 (54752804-54752938) | |
| 497-631, gnl|canFam2|chr34 (22202463-22202613) | |
| 497-631, gnl|danRer3|chr9 (30600642-30600497) | |
| 497-631, gnl|dasNov1|scaffold_3916 (95573-95723) | |
| 497-631, gnl|echTel1|scaffold_288852 (9263-9413) | |
| 497-631, gnl|fr1|chrUn (277530337-277530498) | |
| 497-631, gnl|galGal2|chr9 (9240753-9240603) | |
| 497-631, gnl|hg17|chr3 (187778149-187778299) | |
| 497-631, gnl|Hg17|chr3 (187778159-187778293) | |
| 497-631, gnl|loxAfr1|scaffold_816 (133487-133637) | |
| 497-631, gnl|mm7|chr16 (22528306-22528456) | |
| 497-631, gnl|Mm7|chr16 (22528316-22528450) | |
| 497-631, gnl|monDom2|scaffold_77 (937227-937377) | |
| 497-631, gnl|oryCun1|scaffold_208545 (74316-74466) | |
| 497-631, gnl|panTro1|chr2 (191870449-191870599) | |
| 497-631, gnl|rheMac2|chr2 (100057502-100057352) | |
| 497-631, gnl|rn3|chr11 (80423927-80423777) | |
| 497-631, gnl|tetNig1|chr2 (7015883-7015742) | |
| 497-631, gnl|xenTro1|scaffold_282 (477493-477343) | |
| 911-1028, gnl|bosTau2|chr1 (54757473-54757590) | |
| 911-1028, gnl|canFam2|chr34 (22208981-22209110) | |
| 911-1028, gnl|danRer3|chr9 (30598425-30598296) | |
| 911-1028, gnl|dasNov1|scaffold_39704 (4454-4582) | |
| 911-1028, gnl|echTel1|scaffold_240140 (7038-7164) | |
| 911-1028, gnl|fr1|chrUn (277531582-277531711) | |
| 911-1028, gnl|galGal2|chr9 (9237989-9237868) | |
| 911-1028, gnl|hg17|chr3 (187784342-187784471) | |
| 911-1028, gnl|Hg17|chr3 (187784353-187784470) | |
| 911-1028, gnl|loxAfr1|scaffold_816 (141284-141410) | |
| 911-1028, gnl|mm7|chr16 (22531955-22532082) | |
| 911-1028, gnl|Mm7|chr16 (22531964-22532081) | |
| 911-1028, gnl|monDom2|scaffold_77 (946496-946625) | |
| 911-1028, gnl|oryCun1|scaffold_202439 (43579-43705) | |
| 911-1028, gnl|panTro1|chr2 (191876645-191876774) | |
| 911-1028, gnl|rheMac2|chr2 (100051288-100051160) | |
| 911-1028, gnl|rn3|chr11 (80419793-80419666) | |
| 911-1028, gnl|tetNig1|chr2 (7014726-7014597) | |
| 911-1028, gnl|xenTro1|scaffold_282 (436506-436370) | |
| 1184-1632, gnl|bosTau2|chr1 (54758425-54758860) | |
| 1184-1632, gnl|Hg17|chr3 (187785833-187786274) | |
| 1184-1632, gnl|Mm7|chr16 (22533065-22533492) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-246, gnl|bosTau2|chr1 (54740819-54741059) | |
| 1-246, gnl|canFam2|chr34 (22193693-22194059) | |
| 1-246, gnl|dasNov1|scaffold_3916 (84940-85290) | |
| 1-246, gnl|echTel1|scaffold_288921 (67500-67835) | |
| 1-246, gnl|galGal2|chr9 (9245185-9244839) | |
| 1-246, gnl|hg17|chr3 (187771062-187771423) | |
| 1-246, gnl|Hg17|chr3 (187771209-187771461) | |
| 1-246, gnl|mm7|chr16 (22519142-22519472) | |
| 1-246, gnl|Mm7|chr16 (22519280-22519510) | |
| 1-246, gnl|monDom2|scaffold_77 (923198-923427) | |
| 1-246, gnl|oryCun1|scaffold_202439 (25389-25743) | |
| 1-246, gnl|panTro1|chr2 (191863386-191863747) | |
| 1-246, gnl|rheMac2|chr2 (100066385-100066023) | |
| 1-246, gnl|rn3|chr11 (80434577-80434247) | |
| 497-631, gnl|bosTau2|chr1 (54752804-54752938) | |
| 497-631, gnl|canFam2|chr34 (22202463-22202613) | |
| 497-631, gnl|danRer3|chr9 (30600642-30600497) | |
| 497-631, gnl|dasNov1|scaffold_3916 (95573-95723) | |
| 497-631, gnl|echTel1|scaffold_288852 (9263-9413) | |
| 497-631, gnl|fr1|chrUn (277530337-277530498) | |
| 497-631, gnl|galGal2|chr9 (9240753-9240603) | |
| 497-631, gnl|hg17|chr3 (187778149-187778299) | |
| 497-631, gnl|Hg17|chr3 (187778159-187778293) | |
| 497-631, gnl|loxAfr1|scaffold_816 (133487-133637) | |
| 497-631, gnl|mm7|chr16 (22528306-22528456) | |
| 497-631, gnl|Mm7|chr16 (22528316-22528450) | |
| 497-631, gnl|monDom2|scaffold_77 (937227-937377) | |
| 497-631, gnl|oryCun1|scaffold_208545 (74316-74466) | |
| 497-631, gnl|panTro1|chr2 (191870449-191870599) | |
| 497-631, gnl|rheMac2|chr2 (100057502-100057352) | |
| 497-631, gnl|rn3|chr11 (80423927-80423777) | |
| 497-631, gnl|tetNig1|chr2 (7015883-7015742) | |
| 497-631, gnl|xenTro1|scaffold_282 (477493-477343) | |
| 911-1028, gnl|bosTau2|chr1 (54757473-54757590) | |
| 911-1028, gnl|canFam2|chr34 (22208981-22209110) | |
| 911-1028, gnl|danRer3|chr9 (30598425-30598296) | |
| 911-1028, gnl|dasNov1|scaffold_39704 (4454-4582) | |
| 911-1028, gnl|echTel1|scaffold_240140 (7038-7164) | |
| 911-1028, gnl|fr1|chrUn (277531582-277531711) | |
| 911-1028, gnl|galGal2|chr9 (9237989-9237868) | |
| 911-1028, gnl|hg17|chr3 (187784342-187784471) | |
| 911-1028, gnl|Hg17|chr3 (187784353-187784470) | |
| 911-1028, gnl|loxAfr1|scaffold_816 (141284-141410) | |
| 911-1028, gnl|mm7|chr16 (22531955-22532082) | |
| 911-1028, gnl|Mm7|chr16 (22531964-22532081) | |
| 911-1028, gnl|monDom2|scaffold_77 (946496-946625) | |
| 911-1028, gnl|oryCun1|scaffold_202439 (43579-43705) | |
| 911-1028, gnl|panTro1|chr2 (191876645-191876774) | |
| 911-1028, gnl|rheMac2|chr2 (100051288-100051160) | |
| 911-1028, gnl|rn3|chr11 (80419793-80419666) | |
| 911-1028, gnl|tetNig1|chr2 (7014726-7014597) | |
| 911-1028, gnl|xenTro1|scaffold_282 (436506-436370) | |
| 1184-1632, gnl|bosTau2|chr1 (54758425-54758860) | |
| 1184-1632, gnl|Hg17|chr3 (187785833-187786274) | |
| 1184-1632, gnl|Mm7|chr16 (22533065-22533492) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| eye (0.511509) | |
| cje (0.495704) | |
| aor (0.390549) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sin (0.174948) | |
| cki (0.165235) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| cje (0.495704) | |
| aor (0.390549) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sin (0.174948) | |
| cki (0.165235) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| eje (0.0988338) |