Non-Coding RNA Search

Ss1.1-Pig4-TMW8060M06.5

Sequence:


               
               GGTGTAAGGTCGTGTGGCGGGCTTTGGTTTCGGCCTTTTAAGTTTAAACCTGGGTTTCAC
AGTCCACAGTCTTACACACCTGGGGTCTTGGGGTTGCTACGGACGTTAAAATTCCGGCAC
CCACGCCTCCTACCTTCGGATCGACATCTCAAGACTGAGAAGGAAGCCCTGAAGAGGACG
AAGAGGAAAGAAAAAAAAGAGTCAGGAATGACACTTTCTCAGGCACCATTGACATTCAAA
GATGTGGCCATTGAATTCTCCCAGGAGGAGTGGGACTGCCTGGACCCTGACCAGAGGGCC
TTGTTCTGGGACGTGATGCTGGAGACCTACGGGAACCTGCTCTCCGTGGGTATATCTCCC
AGATGTGCGATCAAAGAATTATCACCAAAAGAGGACGTTAATAATGGAGAATTAGTTCAG
ACACGGGGTTTTGAAAGACCTGTAAGTCATAACTTTGATGATTCTGACTTCAGGGAGGTC
CAACAGAATATGCACCAGTTTGAGAATCAGTGGCAATGTGAAGAAAAAAGTGACAAAAGA
GTGAATACAGCCTCTTGCAAAAATCTCACAGGTAGAAGAAATCAACATCGTAAATTCCAG
AATAATTTTCCTGTAAAGCAGAATGTTTCTGTAAGAAGTATGTCTCATCACCAGTCATGT
GTGAATGAGGAACTAAGAAATGACATAGGCTCTTCAGGAAACAAATCTTTGCAATGTTTA
GGAAATAGGCTTGGAGTAAGCTTACATTCACAGCTAGGTGAACTGCAGATTTTTCAAACC
AAAGAGAAAGTTTATGAATGTAATCAAGTTGAGAAGTCTATCAAAAATCGTTCCTCATTC
TTACCACCTCAAATAATTCCTTCTGGTGTCAAAACCAACACTTGTAATAAAAAAGGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTAAGGTCGTGTGGCGGGCTTTGGTTTCGGCCTTTTAAGTTTAAACCTGGGTTTCAC
AGTCCACAGTCTTACACACCTGGGGTCTTGGGGTTGCTACGGACGTTAAAATTCCGGCAC
CCACGCCTCCTACCTTCGGATCGACATCTCAAGACTGAGAAGGAAGCCCTGAAGAGGACG
AAGAGGAAAGAAAAAAAAGAGTCAGGAATGACACTTTCTCAGGCACCATTGACATTCAAA
GATGTGGCCATTGAATTCTCCCAGGAGGAGTGGGACTGCCTGGACCCTGACCAGAGGGCC
TTGTTCTGGGACGTGATGCTGGAGACCTACGGGAACCTGCTCTCCGTGGGTATATCTCCC
AGATGTGCGATCAAAGAATTATCACCAAAAGAGGACGTTAATAATGGAGAATTAGTTCAG
ACACGGGGTTTTGAAAGACCTGTAAGTCATAACTTTGATGATTCTGACTTCAGGGAGGTC
CAACAGAATATGCACCAGTTTGAGAATCAGTGGCAATGTGAAGAAAAAAGTGACAAAAGA
GTGAATACAGCCTCTTGCAAAAATCTCACAGGTAGAAGAAATCAACATCGTAAATTCCAG
AATAATTTTCCTGTAAAGCAGAATGTTTCTGTAAGAAGTATGTCTCATCACCAGTCATGT
GTGAATGAGGAACTAAGAAATGACATAGGCTCTTCAGGAAACAAATCTTTGCAATGTTTA
GGAAATAGGCTTGGAGTAAGCTTACATTCACAGCTAGGTGAACTGCAGATTTTTCAAACC
AAAGAGAAAGTTTATGAATGTAATCAAGTTGAGAAGTCTATCAAAAATCGTTCCTCATTC
TTACCACCTCAAATAATTCCTTCTGGTGTCAAAACCAACACTTGTAATAAAAAAGGGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               194-311, + strand, RNAz p=0.782316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-311, + strand, RNAz p=0.782316

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               155-356, gnl|bosTau2|chr3 (48479217-48479415)
               

               
               155-356, gnl|Hg17|chr12 (66658477-66658162)
               


               
               671-896, gnl|bosTau2|chr18 (51368880-51368655)
               

               
               671-896, gnl|Hg17|chr19 (57262440-57262231)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-356, gnl|bosTau2|chr3 (48479217-48479415)
               

               
               155-356, gnl|Hg17|chr12 (66658477-66658162)
               


               
               671-896, gnl|bosTau2|chr18 (51368880-51368655)
               

               
               671-896, gnl|Hg17|chr19 (57262440-57262231)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               eje (0.0988338)

	155-356, gnl\|bosTau2\|chr3 (48479217-48479415)
	155-356, gnl\|Hg17\|chr12 (66658477-66658162)

	671-896, gnl\|bosTau2\|chr18 (51368880-51368655)
	671-896, gnl\|Hg17\|chr19 (57262440-57262231)