Non-Coding RNA Search

Ss1.1-Pig4-TMW8060M12.3

Sequence:


               
               GTTAGTATGTTTGTATCTTGTTAACATCCTCAGTTAATTTTGAATTTTTGTAAGTTTGAA
GGGAAAAGGGCCTGTGGAACCTAATGTGAAGTATTTAGTAGGCTAACTGGTATTGAGTTG
AAGTTTTTTTCTGTTTATAAGCAGATATCTGAATGATATGTCATTTACCTGCTGTCTTAA
GATGTTCACACATACACAAATATGGAGACTATCCTACAATATAGAAATATTTATTTTAAT
AGAGTTTCAGTTAAGTCATAAAACAGTGTTAAAACTCTTGGGAAGGTGGAGGGGTTTTTT
TTGTTGTTGTTTTTTAAATTGAAACTGTCATACAGTGTTTGACCATCTGAAACGGGAATT
ATAATAGCACTATTTTGATGTAGTTCTACCAATACTATGTGGCAATGCTATTTAGTTTTA
CTAACAAGCTCTGGAGTATTTAGCAGTCATTTTCACTGGCACAAGAGCCTTTTCTATGTC
ATTCAGTTTAAACTTTTAAACCAAAAACTTTATGGTCCAGTGTCTTTGGCAAAAAGATGC
TGAAGGGAATGTAACATACAATTAATACGTGGTTATATATAAAAAGACACAAATTGCCAT
GTTATGGTTCTGCCTTGAAAACAGCACAATGAAGTGTATCAGCGTATTCTGTGATTCTTT
ATGAAACGCTCATGTTGTGTTGTTTTGTGTCTGCCATAGGGTGTCCTTCGGGCCAGATGT
GGCACAGTTAAATGCAATTATCATCTCATGAAATGCGGATAAAATGTCTTTAGTGCTGCA
ACATTTTACCTAACTTTTTGTATGTTTTATGACTGCGTTGTTTTCCAAAGCTGTTCCTAC
CTCACCATGAGGCTTTATGGATTGTTATGTATTATAAATGTTCCTTATGAGACAGACTAC
TGTGTTTCTTCTCATTTATTAAAAGTTAAGTAGAAAAATAAACTAATTTTAATATCTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGTATGTTTGTATCTTGTTAACATCCTCAGTTAATTTTGAATTTTTGTAAGTTTGAA
GGGAAAAGGGCCTGTGGAACCTAATGTGAAGTATTTAGTAGGCTAACTGGTATTGAGTTG
AAGTTTTTTTCTGTTTATAAGCAGATATCTGAATGATATGTCATTTACCTGCTGTCTTAA
GATGTTCACACATACACAAATATGGAGACTATCCTACAATATAGAAATATTTATTTTAAT
AGAGTTTCAGTTAAGTCATAAAACAGTGTTAAAACTCTTGGGAAGGTGGAGGGGTTTTTT
TTGTTGTTGTTTTTTAAATTGAAACTGTCATACAGTGTTTGACCATCTGAAACGGGAATT
ATAATAGCACTATTTTGATGTAGTTCTACCAATACTATGTGGCAATGCTATTTAGTTTTA
CTAACAAGCTCTGGAGTATTTAGCAGTCATTTTCACTGGCACAAGAGCCTTTTCTATGTC
ATTCAGTTTAAACTTTTAAACCAAAAACTTTATGGTCCAGTGTCTTTGGCAAAAAGATGC
TGAAGGGAATGTAACATACAATTAATACGTGGTTATATATAAAAAGACACAAATTGCCAT
GTTATGGTTCTGCCTTGAAAACAGCACAATGAAGTGTATCAGCGTATTCTGTGATTCTTT
ATGAAACGCTCATGTTGTGTTGTTTTGTGTCTGCCATAGGGTGTCCTTCGGGCCAGATGT
GGCACAGTTAAATGCAATTATCATCTCATGAAATGCGGATAAAATGTCTTTAGTGCTGCA
ACATTTTACCTAACTTTTTGTATGTTTTATGACTGCGTTGTTTTCCAAAGCTGTTCCTAC
CTCACCATGAGGCTTTATGGATTGTTATGTATTATAAATGTTCCTTATGAGACAGACTAC
TGTGTTTCTTCTCATTTATTAAAAGTTAAGTAGAAAAATAAACTAATTTTAATATCTAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-319, - strand, RNAz p=0.516763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-319, - strand, RNAz p=0.516763

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               7-958, gnl|bosTau2|chr16 (53888177-53889124)
               

               
               7-958, gnl|canFam2|chr7 (12912167-12912865)
               

               
               7-958, gnl|echTel1|scaffold_298414 (71257-71944)
               

               
               7-958, gnl|hg17|chr1 (208133284-208133984)
               

               
               7-958, gnl|Hg17|chr1 (208134272-208133305)
               

               
               7-958, gnl|loxAfr1|scaffold_67053 (29176-28488)
               

               
               7-958, gnl|mm7|chr1 (191466199-191465539)
               

               
               7-958, gnl|Mm7|chr1 (191465264-191466175)
               

               
               7-958, gnl|monDom2|scaffold_13 (15243456-15244195)
               

               
               7-958, gnl|oryCun1|scaffold_209560 (39227-38542)
               

               
               7-958, gnl|panTro1|chr1 (191768626-191769326)
               

               
               7-958, gnl|rheMac2|chr1 (158836058-158835354)
               

               
               7-958, gnl|rn3|chr13 (108178168-108177488)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-958, gnl|bosTau2|chr16 (53888177-53889124)
               

               
               7-958, gnl|canFam2|chr7 (12912167-12912865)
               

               
               7-958, gnl|echTel1|scaffold_298414 (71257-71944)
               

               
               7-958, gnl|hg17|chr1 (208133284-208133984)
               

               
               7-958, gnl|Hg17|chr1 (208134272-208133305)
               

               
               7-958, gnl|loxAfr1|scaffold_67053 (29176-28488)
               

               
               7-958, gnl|mm7|chr1 (191466199-191465539)
               

               
               7-958, gnl|Mm7|chr1 (191465264-191466175)
               

               
               7-958, gnl|monDom2|scaffold_13 (15243456-15244195)
               

               
               7-958, gnl|oryCun1|scaffold_209560 (39227-38542)
               

               
               7-958, gnl|panTro1|chr1 (191768626-191769326)
               

               
               7-958, gnl|rheMac2|chr1 (158836058-158835354)
               

               
               7-958, gnl|rn3|chr13 (108178168-108177488)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	7-958, gnl\|bosTau2\|chr16 (53888177-53889124)
	7-958, gnl\|canFam2\|chr7 (12912167-12912865)
	7-958, gnl\|echTel1\|scaffold_298414 (71257-71944)
	7-958, gnl\|hg17\|chr1 (208133284-208133984)
	7-958, gnl\|Hg17\|chr1 (208134272-208133305)
	7-958, gnl\|loxAfr1\|scaffold_67053 (29176-28488)
	7-958, gnl\|mm7\|chr1 (191466199-191465539)
	7-958, gnl\|Mm7\|chr1 (191465264-191466175)
	7-958, gnl\|monDom2\|scaffold_13 (15243456-15244195)
	7-958, gnl\|oryCun1\|scaffold_209560 (39227-38542)
	7-958, gnl\|panTro1\|chr1 (191768626-191769326)
	7-958, gnl\|rheMac2\|chr1 (158836058-158835354)
	7-958, gnl\|rn3\|chr13 (108178168-108177488)

	fce (0.271592)
	cbe (0.239234)
	aor (0.195274)
	col (0.195008)
	duo (0.172801)
	pty (0.142714)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	clu (0.119646)
	ldo (0.0970026)