Non-Coding RNA Search

Ss1.1-Pig4-TMW8060M18.3

Sequence:


               
               AAAAGCTGCAGAAACTGACATGCTGCCAAGGGTGCTAACTTAATGAATATGGGACAGAGC
GTTCCCATTTCCCCACCTACTGCCAAAACAGGTGTTGAATTAGGCCCAAGGTTTTCTTCT
AATTGCAAATAATTTTAAGGACAATGAACATTTTTTCAACAAGTAATTATGCCTACATAT
AGCCTGTGGACTAAAATGGTTCAAGCATAACAAATGTTAATTTAAAAAAAAAAACAGTTC
CATGCATACATGCCATTAATTAAATCTCACTAACTATTCAAATAAAGAGGACCTCCTGGA
TAAATTGATTTTTTAAAATTAAGCTATGTATGAAAATATGGCCTCAGCACAGGGTCTGAG
CTAGTCCAACCAGCCATACACTGCTGTAGCGGTGATACACATTTGTTACTGTGAGGAGTC
CCCTTAAACCTAAGTGATCCTAGATAGTTGCTGGAAAGTGAGATGAACGTTTTCTCTGTG
ATGGTAGTATACAGAAGTTCTGAGAACATGCCAGAGCTCATATTACACCAAAAATACTTC
CTGAAGGATAGTTATTGCAAAGTCATATTCAAAAAAAAAGCCCAGAGAAACTAGTTTTAC
AGATGCTGTTGATATAAAACCAAAAGGAAGTTTCTTTTCTCTTCCTTTGTGAAATCTAAA
CCTGTTCATTCTACTCTCATCTTCAATAGTGAGCCAAAGGAAGCAATACTGAGATCAAAC
TGCTGCCTCTAGAGGTTAATCCTTGTAGAATCAGAAGACAGAGTGAAGTTGAAGTTTCTG
TTTTGAACAGCCTGAGAGATTGTGTTGGTTACTCACACTCTTTGGGAGCAATTGTGTCCA
AGACACCCCTAAAGAAACAAGAAGTCATCTAAAAGACTATGTTAGGTAACAGATTATTGT
AGTAAATTATCACAGATGGTGAATATTGAAGCTTGTGAATAATAATGACCAAGTGACCTT
CCTTGAGCACCGCCTTTGGAGTGGGAAAGGCTGGACTTTGCATGCAGAGTGATGCTAATT
GTTCAGCAAGCAAACTGTGAGCTCTCCTGAGTTATAGTATAGCTTGCAAGAGCAAATTGT
GCATCTGAAAAAAAATGCAGCAAAATATTAAAGAATGGGCAATAATTTTTACTTCATATT
TGATGAGTCCAACCATTTCTTCATTTTCCATAGCGTTTCCTACTAGACTTAGTGGACTTT
AAGAATCAAGTTATTACTAAAACTCAAAAAATAAAGCCCAATGAAATCTAATGTCAATAG
ATGGAAAATTCAAATTAATCAATATTTCTAAGTAGCTGATGGATGGTGTATATCTGACAG
AATATTTAAATGTAGAATGTCTGATGTATTCTTACAGGAATCAGCGATAGGGAATGTTTT
TACTCAACATGCACAGAATATGTCTTTTGCATCATAAACCTATTAAAAAGCAGGTTTTAA
GTGTTTATGTACTTATCTATTCCATACTTGTTACTTTGTAGAAAGCAGAGCAGCATTCCT
GATCAAGGTATGATACTGAGTTAACTTTTTCTTGGACGGGATAGTAACCGCACAGTCTTA
AATCACGAAAGAGACTGTATTTTTGTATAATGTCAGTTGAACTATGAAGAAAAAAAGACT
CCTCATAATTAAAAATGTCATGAAAGTGAATGTTTTGCCTACCCAAATGAAGGTACTGTG
GACCCCATGTCAAACCGTTAAATATATTGTATACAATCTGTATATATACTATATATAATG
GTATATACCATGTGGAAGGCACAGTCAGATAATAGTTCTGTGTACTGTTCTTGTAACATT
AGATCTTTTTAATAAATAACTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCTGCAGAAACTGACATGCTGCCAAGGGTGCTAACTTAATGAATATGGGACAGAGC
GTTCCCATTTCCCCACCTACTGCCAAAACAGGTGTTGAATTAGGCCCAAGGTTTTCTTCT
AATTGCAAATAATTTTAAGGACAATGAACATTTTTTCAACAAGTAATTATGCCTACATAT
AGCCTGTGGACTAAAATGGTTCAAGCATAACAAATGTTAATTTAAAAAAAAAAACAGTTC
CATGCATACATGCCATTAATTAAATCTCACTAACTATTCAAATAAAGAGGACCTCCTGGA
TAAATTGATTTTTTAAAATTAAGCTATGTATGAAAATATGGCCTCAGCACAGGGTCTGAG
CTAGTCCAACCAGCCATACACTGCTGTAGCGGTGATACACATTTGTTACTGTGAGGAGTC
CCCTTAAACCTAAGTGATCCTAGATAGTTGCTGGAAAGTGAGATGAACGTTTTCTCTGTG
ATGGTAGTATACAGAAGTTCTGAGAACATGCCAGAGCTCATATTACACCAAAAATACTTC
CTGAAGGATAGTTATTGCAAAGTCATATTCAAAAAAAAAGCCCAGAGAAACTAGTTTTAC
AGATGCTGTTGATATAAAACCAAAAGGAAGTTTCTTTTCTCTTCCTTTGTGAAATCTAAA
CCTGTTCATTCTACTCTCATCTTCAATAGTGAGCCAAAGGAAGCAATACTGAGATCAAAC
TGCTGCCTCTAGAGGTTAATCCTTGTAGAATCAGAAGACAGAGTGAAGTTGAAGTTTCTG
TTTTGAACAGCCTGAGAGATTGTGTTGGTTACTCACACTCTTTGGGAGCAATTGTGTCCA
AGACACCCCTAAAGAAACAAGAAGTCATCTAAAAGACTATGTTAGGTAACAGATTATTGT
AGTAAATTATCACAGATGGTGAATATTGAAGCTTGTGAATAATAATGACCAAGTGACCTT
CCTTGAGCACCGCCTTTGGAGTGGGAAAGGCTGGACTTTGCATGCAGAGTGATGCTAATT
GTTCAGCAAGCAAACTGTGAGCTCTCCTGAGTTATAGTATAGCTTGCAAGAGCAAATTGT
GCATCTGAAAAAAAATGCAGCAAAATATTAAAGAATGGGCAATAATTTTTACTTCATATT
TGATGAGTCCAACCATTTCTTCATTTTCCATAGCGTTTCCTACTAGACTTAGTGGACTTT
AAGAATCAAGTTATTACTAAAACTCAAAAAATAAAGCCCAATGAAATCTAATGTCAATAG
ATGGAAAATTCAAATTAATCAATATTTCTAAGTAGCTGATGGATGGTGTATATCTGACAG
AATATTTAAATGTAGAATGTCTGATGTATTCTTACAGGAATCAGCGATAGGGAATGTTTT
TACTCAACATGCACAGAATATGTCTTTTGCATCATAAACCTATTAAAAAGCAGGTTTTAA
GTGTTTATGTACTTATCTATTCCATACTTGTTACTTTGTAGAAAGCAGAGCAGCATTCCT
GATCAAGGTATGATACTGAGTTAACTTTTTCTTGGACGGGATAGTAACCGCACAGTCTTA
AATCACGAAAGAGACTGTATTTTTGTATAATGTCAGTTGAACTATGAAGAAAAAAAGACT
CCTCATAATTAAAAATGTCATGAAAGTGAATGTTTTGCCTACCCAAATGAAGGTACTGTG
GACCCCATGTCAAACCGTTAAATATATTGTATACAATCTGTATATATACTATATATAATG
GTATATACCATGTGGAAGGCACAGTCAGATAATAGTTCTGTGTACTGTTCTTGTAACATT
AGATCTTTTTAATAAATAACTCTC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-802, gnl|bosTau2|chr15 (1750828-1751618)
               

               
               1-802, gnl|canFam2|chr21 (4127632-4127012)
               

               
               1-802, gnl|dasNov1|scaffold_18451 (9962-10599)
               

               
               1-802, gnl|echTel1|scaffold_191953 (2308-1780)
               

               
               1-802, gnl|hg17|chr11 (99732887-99733529)
               

               
               1-802, gnl|Hg17|chr11 (99732951-99733762)
               

               
               1-802, gnl|mm7|chr9 (9689199-9688606)
               

               
               1-802, gnl|Mm7|chr9 (9689140-9688404)
               

               
               1-802, gnl|monDom2|scaffold_65 (4904183-4904918)
               

               
               1-802, gnl|oryCun1|scaffold_186535 (18909-18290)
               

               
               1-802, gnl|panTro1|chr9 (101709086-101709728)
               

               
               1-802, gnl|rheMac2|chr14 (99004170-99004812)
               

               
               1-802, gnl|rn3|chr8 (6471095-6470492)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-802, gnl|bosTau2|chr15 (1750828-1751618)
               

               
               1-802, gnl|canFam2|chr21 (4127632-4127012)
               

               
               1-802, gnl|dasNov1|scaffold_18451 (9962-10599)
               

               
               1-802, gnl|echTel1|scaffold_191953 (2308-1780)
               

               
               1-802, gnl|hg17|chr11 (99732887-99733529)
               

               
               1-802, gnl|Hg17|chr11 (99732951-99733762)
               

               
               1-802, gnl|mm7|chr9 (9689199-9688606)
               

               
               1-802, gnl|Mm7|chr9 (9689140-9688404)
               

               
               1-802, gnl|monDom2|scaffold_65 (4904183-4904918)
               

               
               1-802, gnl|oryCun1|scaffold_186535 (18909-18290)
               

               
               1-802, gnl|panTro1|chr9 (101709086-101709728)
               

               
               1-802, gnl|rheMac2|chr14 (99004170-99004812)
               

               
               1-802, gnl|rn3|chr8 (6471095-6470492)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-802, gnl\|bosTau2\|chr15 (1750828-1751618)
	1-802, gnl\|canFam2\|chr21 (4127632-4127012)
	1-802, gnl\|dasNov1\|scaffold_18451 (9962-10599)
	1-802, gnl\|echTel1\|scaffold_191953 (2308-1780)
	1-802, gnl\|hg17\|chr11 (99732887-99733529)
	1-802, gnl\|Hg17\|chr11 (99732951-99733762)
	1-802, gnl\|mm7\|chr9 (9689199-9688606)
	1-802, gnl\|Mm7\|chr9 (9689140-9688404)
	1-802, gnl\|monDom2\|scaffold_65 (4904183-4904918)
	1-802, gnl\|oryCun1\|scaffold_186535 (18909-18290)
	1-802, gnl\|panTro1\|chr9 (101709086-101709728)
	1-802, gnl\|rheMac2\|chr14 (99004170-99004812)
	1-802, gnl\|rn3\|chr8 (6471095-6470492)