Ss1.1-Pig4-TMW8060M22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCACCTGTCGTGGGCCAAGCCACAGCCTTTGAATGAGACGGCTCCCAGTAACCTTTGG AAACACCAGAAGTTACTCTCCATCGACCTGGACAAAGTGGTGTTACCCAACTTTCGATCG AATCGCCCTCAAGTGAGACCCTTGTCCCCCGGAGAGAGTGGCGCCTGGGACATTCCTGGA GGGATCATGCCCGGCCGCTACAACCAGGAGGTGGGCCAGACCATTCCCGTCTTCGCCTTC CTGGGAGCCATGGTGGTCCTGGCCTTCTTCGTGGTGCAGATCAACAAGGCCAAGAGCAGG CCGAAGCGGAGGAAGCCCAGGGTGAAGCGCCCGCAGCTCATGCAGCAGGCCCACCCGCCC AAGACCCCCTCGGTGTGACGGCCGCCCGGGAGAGGCAGCGCGCGCGCGGGGGCAGCGGGG TCTGGGCCGTCCGGGGGGGCGCCCGCCGCCGCCCCGAGCTGGCTGTGAGCCGGCCTCCCC GGCCGGCCAGCAGCGCAGGCTCTCGGCGCCCGGTGAGGGGGCCCGGGCTCAGCCTGGACG GAGACCCACCGGCCGCCGCGTGCACCAAAGACTCGGGCAGCGTCCCAGGGCTGTCGGGGA AGAAGCAGCTCTGACCGAGCGGAGCTACGCGGGTCACGGCTCTTTTCTATATTTATTGTT GGAGAAAGTCACTTTAAAGACTCGCACGGTTTGGAAGCAAAGCTATTTTTTTGTCGGTGG AATGCAGTTTTTACTATCCCATCGTGAGGAACGCCCCAGATGCCATGACCTCCTTTTCGA TGAAAGGATAGCCTGAGGTTGGAAGGAAACTCGCACAAATCTGTGAAACATAGCCCTTCG CTTTATTTTTATAAGTATCAACTGCCATCATGTTTTGTAATTTGGGTCTTGATTTCACCA TTGTCGGTGAAGAAAATTTTCAATAAATACGCATTACCTGTCTGACGCAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCACCTGTCGTGGGCCAAGCCACAGCCTTTGAATGAGACGGCTCCCAGTAACCTTTGG AAACACCAGAAGTTACTCTCCATCGACCTGGACAAAGTGGTGTTACCCAACTTTCGATCG AATCGCCCTCAAGTGAGACCCTTGTCCCCCGGAGAGAGTGGCGCCTGGGACATTCCTGGA GGGATCATGCCCGGCCGCTACAACCAGGAGGTGGGCCAGACCATTCCCGTCTTCGCCTTC CTGGGAGCCATGGTGGTCCTGGCCTTCTTCGTGGTGCAGATCAACAAGGCCAAGAGCAGG CCGAAGCGGAGGAAGCCCAGGGTGAAGCGCCCGCAGCTCATGCAGCAGGCCCACCCGCCC AAGACCCCCTCGGTGTGACGGCCGCCCGGGAGAGGCAGCGCGCGCGCGGGGGCAGCGGGG TCTGGGCCGTCCGGGGGGGCGCCCGCCGCCGCCCCGAGCTGGCTGTGAGCCGGCCTCCCC GGCCGGCCAGCAGCGCAGGCTCTCGGCGCCCGGTGAGGGGGCCCGGGCTCAGCCTGGACG GAGACCCACCGGCCGCCGCGTGCACCAAAGACTCGGGCAGCGTCCCAGGGCTGTCGGGGA AGAAGCAGCTCTGACCGAGCGGAGCTACGCGGGTCACGGCTCTTTTCTATATTTATTGTT GGAGAAAGTCACTTTAAAGACTCGCACGGTTTGGAAGCAAAGCTATTTTTTTGTCGGTGG AATGCAGTTTTTACTATCCCATCGTGAGGAACGCCCCAGATGCCATGACCTCCTTTTCGA TGAAAGGATAGCCTGAGGTTGGAAGGAAACTCGCACAAATCTGTGAAACATAGCCCTTCG CTTTATTTTTATAAGTATCAACTGCCATCATGTTTTGTAATTTGGGTCTTGATTTCACCA TTGTCGGTGAAGAAAATTTTCAATAAATACGCATTACCTGTCTGACGCAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 30-182, gnl|bosTau2|chr18 (10799394-10799546) | |
| 30-182, gnl|canFam2|chr5 (71279455-71279291) | |
| 30-182, gnl|danRer3|chr18 (21077893-21077723) | |
| 30-182, gnl|dasNov1|scaffold_102470 (1540-1375) | |
| 30-182, gnl|echTel1|scaffold_259200 (2638-2787) | |
| 30-182, gnl|fr1|chrUn (168715864-168716009) | |
| 30-182, gnl|galGal2|chr11 (2416107-2415950) | |
| 30-182, gnl|hg17|chr16 (82647103-82647267) | |
| 30-182, gnl|Hg17|chr16 (82647262-82647110) | |
| 30-182, gnl|loxAfr1|scaffold_274 (47139-47303) | |
| 30-182, gnl|mm7|chr8 (118131388-118131552) | |
| 30-182, gnl|Mm7|chr8 (118131547-118131395) | |
| 30-182, gnl|monDom2|scaffold_23 (16638328-16638169) | |
| 30-182, gnl|oryCun1|scaffold_110700 (6643-6807) | |
| 30-182, gnl|panTro1|chr18 (77534627-77534791) | |
| 30-182, gnl|rheMac2|chr20 (82185239-82185402) | |
| 30-182, gnl|rn3|chr19 (49758397-49758561) | |
| 30-182, gnl|xenTro1|scaffold_696 (568998-568829) | |
| 728-951, gnl|bosTau2|chr15 (39281793-39282015) | |
| 728-951, gnl|Hg17|chr16 (82645087-82644871) | |
| 728-951, gnl|Mm7|chr8 (118129504-118129290) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-182, gnl|bosTau2|chr18 (10799394-10799546) | |
| 30-182, gnl|canFam2|chr5 (71279455-71279291) | |
| 30-182, gnl|danRer3|chr18 (21077893-21077723) | |
| 30-182, gnl|dasNov1|scaffold_102470 (1540-1375) | |
| 30-182, gnl|echTel1|scaffold_259200 (2638-2787) | |
| 30-182, gnl|fr1|chrUn (168715864-168716009) | |
| 30-182, gnl|galGal2|chr11 (2416107-2415950) | |
| 30-182, gnl|hg17|chr16 (82647103-82647267) | |
| 30-182, gnl|Hg17|chr16 (82647262-82647110) | |
| 30-182, gnl|loxAfr1|scaffold_274 (47139-47303) | |
| 30-182, gnl|mm7|chr8 (118131388-118131552) | |
| 30-182, gnl|Mm7|chr8 (118131547-118131395) | |
| 30-182, gnl|monDom2|scaffold_23 (16638328-16638169) | |
| 30-182, gnl|oryCun1|scaffold_110700 (6643-6807) | |
| 30-182, gnl|panTro1|chr18 (77534627-77534791) | |
| 30-182, gnl|rheMac2|chr20 (82185239-82185402) | |
| 30-182, gnl|rn3|chr19 (49758397-49758561) | |
| 30-182, gnl|xenTro1|scaffold_696 (568998-568829) | |
| 728-951, gnl|bosTau2|chr15 (39281793-39282015) | |
| 728-951, gnl|Hg17|chr16 (82645087-82644871) | |
| 728-951, gnl|Mm7|chr8 (118129504-118129290) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |