Ss1.1-Pig4-TMW8060N02.5
|
CTTTGCAGGCGGCCCGGCAGGACGGGTAGGGCACGCACTGGCCCCGGAGCCCACTCGCAC
CCCTCCCCCAGAGCGCTGACTCGGCTCCCCGGACCGCGGCAGGATGGAAGAGAAGCTGAA
GAAAAGCAAGATCATCTTTGTGGTGGGCGGGCCCGGCTCGGGGAAGGGCACCCAGTGTGA
GAAGATTGTCCAGAAGTACGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGGCCGA
GGTCAGCTCGGGCTCGGCCAGGGGCAAGATGCTGTCGGAAATCATGGAGAAGGGGCAGCT
GGTGCCACTGGAGACAGTGTTGGACATGCTCCGAGACGCCATGGTGGCCAAAGTAGATAC
TTCCAAAGGCTTCCTGATCGACGGCTACCCCCGGGAGGTGAAGCAGGGGGAAGAGTTTGA
GCGGAAGATCGGACAGCCCACACTGCTGCTGTATGTGGACGCGGGCCCTGAGACCATGAC
CAAGCGGCTCCTGAAGCGCGGAGAGACCAGTGGGCGCGTGGACGACAACGAAGAGACCAT
CAAGAAGCGGCTGGAGACCTACTACAAGGCCACAGAGCCCGTCATTGCCTTCTACGAGAA
ACGTGGCATCGTTCGCAAGGTCAATGCCGAAGGCTCCGTGGACGATGTCTTCTCGCAGGT
GTGCACCCACTTGGACACCCTCAAGTAGCCAAGCTGGAGCCCCTTCCCCTGCTCAGAGCC
CCGCCCTGCCCTCATCCTGACTGGGCCCTCCCGGCCTGCGCTCAGCGCCGCCGCCCTGCC
CGGCTGGAGCACAGGCAGAGGAAGCCACTTTATCCTGTTTTCATGGACAGCCGAACACTA
AAGGAATTTCCAAGGAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTTGCAGGCGGCCCGGCAGGACGGGTAGGGCACGCACTGGCCCCGGAGCCCACTCGCAC
CCCTCCCCCAGAGCGCTGACTCGGCTCCCCGGACCGCGGCAGGATGGAAGAGAAGCTGAA
GAAAAGCAAGATCATCTTTGTGGTGGGCGGGCCCGGCTCGGGGAAGGGCACCCAGTGTGA
GAAGATTGTCCAGAAGTACGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGGCCGA
GGTCAGCTCGGGCTCGGCCAGGGGCAAGATGCTGTCGGAAATCATGGAGAAGGGGCAGCT
GGTGCCACTGGAGACAGTGTTGGACATGCTCCGAGACGCCATGGTGGCCAAAGTAGATAC
TTCCAAAGGCTTCCTGATCGACGGCTACCCCCGGGAGGTGAAGCAGGGGGAAGAGTTTGA
GCGGAAGATCGGACAGCCCACACTGCTGCTGTATGTGGACGCGGGCCCTGAGACCATGAC
CAAGCGGCTCCTGAAGCGCGGAGAGACCAGTGGGCGCGTGGACGACAACGAAGAGACCAT
CAAGAAGCGGCTGGAGACCTACTACAAGGCCACAGAGCCCGTCATTGCCTTCTACGAGAA
ACGTGGCATCGTTCGCAAGGTCAATGCCGAAGGCTCCGTGGACGATGTCTTCTCGCAGGT
GTGCACCCACTTGGACACCCTCAAGTAGCCAAGCTGGAGCCCCTTCCCCTGCTCAGAGCC
CCGCCCTGCCCTCATCCTGACTGGGCCCTCCCGGCCTGCGCTCAGCGCCGCCGCCCTGCC
CGGCTGGAGCACAGGCAGAGGAAGCCACTTTATCCTGTTTTCATGGACAGCCGAACACTA
AAGGAATTTCCAAGGAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
146-314, gnl|bosTau2|chr11 (77394278-77394110) |
|
146-314, gnl|canFam2|chr9 (58888410-58888229) |
|
146-314, gnl|danRer3|chr9 (23325971-23325799) |
|
146-314, gnl|dasNov1|scaffold_3785 (42626-42455) |
|
146-314, gnl|echTel1|scaffold_303066 (4451-4270) |
|
146-314, gnl|fr1|chrUn (42504489-42504663) |
|
146-314, gnl|hg17|chr9 (127714518-127714699) |
|
146-314, gnl|Hg17|chr9 (127714687-127714519) |
|
146-314, gnl|loxAfr1|scaffold_108136 (5989-5808) |
|
146-314, gnl|mm7|chr2 (32637716-32637535) |
|
146-314, gnl|Mm7|chr2 (32637545-32637713) |
|
146-314, gnl|monDom2|scaffold_51 (2313739-2313919) |
|
146-314, gnl|oryCun1|scaffold_159521 (5778-5597) |
|
146-314, gnl|panTro1|chr11 (112533220-112533401) |
|
146-314, gnl|rheMac2|chr15 (98699069-98698888) |
|
146-314, gnl|rn3|chr2_random (4263350-4263521) |
|
146-314, gnl|tetNig1|chr4 (4605962-4605788) |
|
146-314, gnl|xenTro1|scaffold_82 (2040509-2040328) |
| |
|
618-856, gnl|bosTau2|chr11 (77389939-77389701) |
|
618-856, gnl|Hg17|chr9 (127709911-127709674) |
|
618-856, gnl|Mm7|chr2 (32640950-32641174) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
146-314, gnl|bosTau2|chr11 (77394278-77394110) |
|
146-314, gnl|canFam2|chr9 (58888410-58888229) |
|
146-314, gnl|danRer3|chr9 (23325971-23325799) |
|
146-314, gnl|dasNov1|scaffold_3785 (42626-42455) |
|
146-314, gnl|echTel1|scaffold_303066 (4451-4270) |
|
146-314, gnl|fr1|chrUn (42504489-42504663) |
|
146-314, gnl|hg17|chr9 (127714518-127714699) |
|
146-314, gnl|Hg17|chr9 (127714687-127714519) |
|
146-314, gnl|loxAfr1|scaffold_108136 (5989-5808) |
|
146-314, gnl|mm7|chr2 (32637716-32637535) |
|
146-314, gnl|Mm7|chr2 (32637545-32637713) |
|
146-314, gnl|monDom2|scaffold_51 (2313739-2313919) |
|
146-314, gnl|oryCun1|scaffold_159521 (5778-5597) |
|
146-314, gnl|panTro1|chr11 (112533220-112533401) |
|
146-314, gnl|rheMac2|chr15 (98699069-98698888) |
|
146-314, gnl|rn3|chr2_random (4263350-4263521) |
|
146-314, gnl|tetNig1|chr4 (4605962-4605788) |
|
146-314, gnl|xenTro1|scaffold_82 (2040509-2040328) |
| |
|
618-856, gnl|bosTau2|chr11 (77389939-77389701) |
|
618-856, gnl|Hg17|chr9 (127709911-127709674) |
|
618-856, gnl|Mm7|chr2 (32640950-32641174) |
|
nms (0.855432) |
|
mas (0.630915) |
|
duo (0.518403) |
|
eru (0.480192) |
|
hlv (0.417769) |
|
nep (0.36785) |
|
nco (0.323468) |
|
nbm (0.297974) |
|
nmm (0.265604) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
nms (0.855432) |
|
mas (0.630915) |
|
duo (0.518403) |
|
eru (0.480192) |
|
hlv (0.417769) |
|
nep (0.36785) |
|
nco (0.323468) |
|
nbm (0.297974) |
|
nmm (0.265604) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
