Non-Coding RNA Search

Ss1.1-Pig4-TMW8060N05.3

Sequence:


               
               TGCCTGGATGAGTACTTTGTCTTTTCTAGGGCATGACTGTGATGTTTGCTATTATTTTTA
TTTATATTTATTTTTTTAATTTAACATGAACACCCTTAGAAAATGCGTCTTGTCTTCCAA
ATGCAATTTGGCTGACTGCCCTCCCCCTCATTTACCCAAATGGTCCTGAACTCCTCTGTG
AAAAACAGATGCTAGAAACTAGAAAAAAATGACAATTTTTTACACATTAGATTTTAGTTT
ACTAATGGAAACTAAAAGGATGTACTGTGTGTTTCTTTTATAAATTTTAGTTTTAAAAAA
CGAGAAAGCAAAGTATAAACAGTAATGAGATACTGTCATACTACTGATAGAGATGTCATA
CCTCAGGACGTGTAAGAATTTATTAATTCTTTAATTCAGCCAACTCATGCTTTAAAATAG
TTATTCAATAGCACTCTTGCTGTTTATACCATTCAGATCACTCAATTCATAAAGTACCCA
TCTAGTTCTTGGACAGTAAAGTCTTGAGCTCGAGCTGTGCCCATAGAGGAAGGACCCTGA
TGCAGTACATCCCAAATGCACTTTCTGCTGTTTCTGGGTCCTGAAGAATCAAGATACAAA
ATAGTTTTATTCCACAGACTGTTGACTATGGGAGCCTTAATTTTTCTTTCTTAAAGAGTT
ACCTGATTGCATCTCAGCAGTTATTCTGCCCTCCTAAATTTGGGAAGAGGGTGTGTTTTC
TCTGGAATGGTACATGTCTTCCATGTATCTTTTGAACTGGCAGTTTTTTGTTTTTTTTTT
AAATTCAACATGGTCTTACACTGGCACGTTCAAAGCCACATTATTCCTAGTCCAAAGTTG
CAGGTAATCAAATGTCTTTGAGTTAAACATTTAATGTTCCTGATTTTGTGCAAAAAATTA
AAACAGCTACATTAGAAAAAGAGGCGCTTCCCCCCGACACCTAAAGGTGTATTTAAACTA
TCTTGTGTGATTAACTTATTTAGAGATGGTATAATTTAAAATAGGTAGTATTTAAGGTAG
CATTTACTAGCTTTTAGGAAAATCACTTTGTCTAAACTCAGAGGTCTTTTAAAAAAGAAA
TCTGATCTTATTTGTTAGAAAACAAAATTTTATTTTGTGCTGACTTAAGTTGCAAACTTA
TTTTTTGACAGTTATCTTGATAACAAAGGCACTAGAAAGCTTTGTCTCATTTCCTCATTC
ATTTTTGCATGAATATCATATACATCAGTTTGCTTTTATGTCCAGGGCTTACCACATTTC
TAGGTCTTTTGCTAATAAGTTCATGTTAGACTTAGTGTCAGAATTTTAGGAACTTCAAAG
ATCGTGTATTGAGATTTCTTAAATAAAGCTTCAGATATTGCTTTATTGCTTTTTGTATTC
GTTAAAACTGTACATTTAAAATTGCTATGTTATTTTCTACAATAGTTTGTCTATTTTTAA
ATAAATTAGCCAAGAGTCTTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTGGATGAGTACTTTGTCTTTTCTAGGGCATGACTGTGATGTTTGCTATTATTTTTA
TTTATATTTATTTTTTTAATTTAACATGAACACCCTTAGAAAATGCGTCTTGTCTTCCAA
ATGCAATTTGGCTGACTGCCCTCCCCCTCATTTACCCAAATGGTCCTGAACTCCTCTGTG
AAAAACAGATGCTAGAAACTAGAAAAAAATGACAATTTTTTACACATTAGATTTTAGTTT
ACTAATGGAAACTAAAAGGATGTACTGTGTGTTTCTTTTATAAATTTTAGTTTTAAAAAA
CGAGAAAGCAAAGTATAAACAGTAATGAGATACTGTCATACTACTGATAGAGATGTCATA
CCTCAGGACGTGTAAGAATTTATTAATTCTTTAATTCAGCCAACTCATGCTTTAAAATAG
TTATTCAATAGCACTCTTGCTGTTTATACCATTCAGATCACTCAATTCATAAAGTACCCA
TCTAGTTCTTGGACAGTAAAGTCTTGAGCTCGAGCTGTGCCCATAGAGGAAGGACCCTGA
TGCAGTACATCCCAAATGCACTTTCTGCTGTTTCTGGGTCCTGAAGAATCAAGATACAAA
ATAGTTTTATTCCACAGACTGTTGACTATGGGAGCCTTAATTTTTCTTTCTTAAAGAGTT
ACCTGATTGCATCTCAGCAGTTATTCTGCCCTCCTAAATTTGGGAAGAGGGTGTGTTTTC
TCTGGAATGGTACATGTCTTCCATGTATCTTTTGAACTGGCAGTTTTTTGTTTTTTTTTT
AAATTCAACATGGTCTTACACTGGCACGTTCAAAGCCACATTATTCCTAGTCCAAAGTTG
CAGGTAATCAAATGTCTTTGAGTTAAACATTTAATGTTCCTGATTTTGTGCAAAAAATTA
AAACAGCTACATTAGAAAAAGAGGCGCTTCCCCCCGACACCTAAAGGTGTATTTAAACTA
TCTTGTGTGATTAACTTATTTAGAGATGGTATAATTTAAAATAGGTAGTATTTAAGGTAG
CATTTACTAGCTTTTAGGAAAATCACTTTGTCTAAACTCAGAGGTCTTTTAAAAAAGAAA
TCTGATCTTATTTGTTAGAAAACAAAATTTTATTTTGTGCTGACTTAAGTTGCAAACTTA
TTTTTTGACAGTTATCTTGATAACAAAGGCACTAGAAAGCTTTGTCTCATTTCCTCATTC
ATTTTTGCATGAATATCATATACATCAGTTTGCTTTTATGTCCAGGGCTTACCACATTTC
TAGGTCTTTTGCTAATAAGTTCATGTTAGACTTAGTGTCAGAATTTTAGGAACTTCAAAG
ATCGTGTATTGAGATTTCTTAAATAAAGCTTCAGATATTGCTTTATTGCTTTTTGTATTC
GTTAAAACTGTACATTTAAAATTGCTATGTTATTTTCTACAATAGTTTGTCTATTTTTAA
ATAAATTAGCCAAGAGTCTTAATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-743, gnl|bosTau2|chr12 (10225091-10225834)
               

               
               1-743, gnl|Hg17|chr13 (47952534-47953229)
               

               
               1-743, gnl|Mm7|chr14 (67878625-67877942)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-743, gnl|bosTau2|chr12 (10225091-10225834)
               

               
               1-743, gnl|Hg17|chr13 (47952534-47953229)
               

               
               1-743, gnl|Mm7|chr14 (67878625-67877942)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-743, gnl\|bosTau2\|chr12 (10225091-10225834)
	1-743, gnl\|Hg17\|chr13 (47952534-47953229)
	1-743, gnl\|Mm7\|chr14 (67878625-67877942)

	sin (0.349895)
	liv (0.292569)
	pla (0.267344)
	mgp (0.230681)
	cbl (0.229595)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	eli (0.151814)
	lin (0.145603)
	nca (0.136874)
	ret (0.128733)
	bla (0.124347)
	ecc (0.115035)
	ldo (0.0970026)