Non-Coding RNA Search

Ss1.1-Pig4-TMW8060N13.3

Sequence:


               
               ACTTATGTGGGACCATTATTTTGTTAACAGTTACTAGTTTAAAAAAATTCGAGTGCTACT
TGCTGCTGACAGGACTATCAAACATTCTGACTTTAGCACTTTCACAGAAGTCTCTTGAAA
ACATACAAAGACATTTGGCTGTTAGTGTCTGAGTTTGGATTTACTCTTTCAAACAAAAGT
CTGTCACTGTGTATCATTTCATCCAGTTATAAATTCAAGAACCTGCAAGTACCCATATTC
TAGGGCTGAATTCCTGAAATCCATTGCTCTTTTATATGAGTCACCACCAGCCTGGCAGGA
AGGGTATTTGAAGTCATGGTCATCAAAAAGAAGTGATTGTTTTCCGAAAAGCTAAATGCT
TAAAATGTTTCCAGAGGGAAGTTGTGGGCTGTGTTCTCATTCCCTCATAGAATCAGAGTT
GTTCAGTTTGTTTTAAAAATTGTTAAGGGTTCATGAGAAAGATATGTAAATTCTGAGAGC
CAACATTATATTCCCAGAAGCACTCTGCCTTGCTGGCCTCATGTCCCCTTATCACTGGAC
TCTGGGGGACACAAAGACTCGTGTAACACTTCAGTGCTTCTGAGTTTGTCAACAAGTATT
CTGGGAAAAAGCAGAATTGAATTCTTCTCTAGACTTCCCACCAGGATTGGCCAAAGGCCA
TAAAACAAGCTAGTAAATTCCCACAGGACCTAAACACCAGGCAAAATTGCTAAAAGAGAC
CAGTCTGAATAAAAAGTAAATAAATAGAAAAATTATAGGACATCCTATGGAGCATCCGGC
CAATACAATACAGAAGCCCCCAAATCAGACTATCCTTTCCTTAATTTTAATAGGTTCAGC
CAGTTTCTTACATTAAAAGAAATTTTTCTAAGGTATGTATATTTGTATACTAAATTATCA
TTTGGCACTTGATAATCATAGAACTTACTACTCAGAGGCAACTGAATAAAGAGAAATTTA
ATTTAAAAATATCAAGTTCTAACACAACTATCCTCCAATATAAAATAAAAATTAAATTAA
AAAAATACATCAAATCCTGTCAGATACTTCTCAGACTCCTGATATTTAGCAGAGTTTTGC
CAGCTAATAAAGTGTTTCTCAAGTATAAAAAGAAAAAAGATCTCTATAGGGTCGTATAGT
TTAAATAATCATTTGTTAGTGATACACAGAATTTCTTAAGTTTTCATTCTAAATGGTTCT
AAATATAAAGTTCCTCATGTTTACCTCTCTTTATACCTCATTCTTGATATGTTTATCTAA
ATTATGTGTGCTTTATGACTGGTGAAATACATATTCATAGTCCCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTATGTGGGACCATTATTTTGTTAACAGTTACTAGTTTAAAAAAATTCGAGTGCTACT
TGCTGCTGACAGGACTATCAAACATTCTGACTTTAGCACTTTCACAGAAGTCTCTTGAAA
ACATACAAAGACATTTGGCTGTTAGTGTCTGAGTTTGGATTTACTCTTTCAAACAAAAGT
CTGTCACTGTGTATCATTTCATCCAGTTATAAATTCAAGAACCTGCAAGTACCCATATTC
TAGGGCTGAATTCCTGAAATCCATTGCTCTTTTATATGAGTCACCACCAGCCTGGCAGGA
AGGGTATTTGAAGTCATGGTCATCAAAAAGAAGTGATTGTTTTCCGAAAAGCTAAATGCT
TAAAATGTTTCCAGAGGGAAGTTGTGGGCTGTGTTCTCATTCCCTCATAGAATCAGAGTT
GTTCAGTTTGTTTTAAAAATTGTTAAGGGTTCATGAGAAAGATATGTAAATTCTGAGAGC
CAACATTATATTCCCAGAAGCACTCTGCCTTGCTGGCCTCATGTCCCCTTATCACTGGAC
TCTGGGGGACACAAAGACTCGTGTAACACTTCAGTGCTTCTGAGTTTGTCAACAAGTATT
CTGGGAAAAAGCAGAATTGAATTCTTCTCTAGACTTCCCACCAGGATTGGCCAAAGGCCA
TAAAACAAGCTAGTAAATTCCCACAGGACCTAAACACCAGGCAAAATTGCTAAAAGAGAC
CAGTCTGAATAAAAAGTAAATAAATAGAAAAATTATAGGACATCCTATGGAGCATCCGGC
CAATACAATACAGAAGCCCCCAAATCAGACTATCCTTTCCTTAATTTTAATAGGTTCAGC
CAGTTTCTTACATTAAAAGAAATTTTTCTAAGGTATGTATATTTGTATACTAAATTATCA
TTTGGCACTTGATAATCATAGAACTTACTACTCAGAGGCAACTGAATAAAGAGAAATTTA
ATTTAAAAATATCAAGTTCTAACACAACTATCCTCCAATATAAAATAAAAATTAAATTAA
AAAAATACATCAAATCCTGTCAGATACTTCTCAGACTCCTGATATTTAGCAGAGTTTTGC
CAGCTAATAAAGTGTTTCTCAAGTATAAAAAGAAAAAAGATCTCTATAGGGTCGTATAGT
TTAAATAATCATTTGTTAGTGATACACAGAATTTCTTAAGTTTTCATTCTAAATGGTTCT
AAATATAAAGTTCCTCATGTTTACCTCTCTTTATACCTCATTCTTGATATGTTTATCTAA
ATTATGTGTGCTTTATGACTGGTGAAATACATATTCATAGTCCCTAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               438-595, - strand, RNAz p=0.868729

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-595, - strand, RNAz p=0.868729

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-980, gnl|bosTau2|chr6 (2817436-2818414)
               

               
               1-980, gnl|Hg17|chr4 (120314625-120315623)
               


               
               1004-1308, gnl|bosTau2|chr6 (2818383-2818670)
               

               
               1004-1308, gnl|Hg17|chr4 (120315593-120315896)
               

               
               1004-1308, gnl|Mm7|chr3 (122946323-122946064)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-980, gnl|bosTau2|chr6 (2817436-2818414)
               

               
               1-980, gnl|Hg17|chr4 (120314625-120315623)
               


               
               1004-1308, gnl|bosTau2|chr6 (2818383-2818670)
               

               
               1004-1308, gnl|Hg17|chr4 (120315593-120315896)
               

               
               1004-1308, gnl|Mm7|chr3 (122946323-122946064)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               aor (1.17165)
               

               
               gul (0.355177)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               spc (0.226732)
               

               
               fat (0.147427)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.17165)
               

               
               gul (0.355177)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               spc (0.226732)
               

               
               fat (0.147427)
               

               
               tra (0.123092)

	1-980, gnl\|bosTau2\|chr6 (2817436-2818414)
	1-980, gnl\|Hg17\|chr4 (120314625-120315623)

	1004-1308, gnl\|bosTau2\|chr6 (2818383-2818670)
	1004-1308, gnl\|Hg17\|chr4 (120315593-120315896)
	1004-1308, gnl\|Mm7\|chr3 (122946323-122946064)

	aor (1.17165)
	gul (0.355177)
	lin (0.291206)
	bla (0.248694)
	spc (0.226732)
	fat (0.147427)
	tra (0.123092)