Non-Coding RNA Search

Ss1.1-Pig4-TMW8060N20.5

Sequence:


               
               GGGAAAAGGCCGCCGCTGTGGGGGGTCGAGCTGGCGGGGGACCGAGCGACCCTCCCTGCA
GCAGTGTCCTCCCGCCCCCGCCCCACAGCGACTCGGGCGACCGCAAGCAGATCTACAACA
TCCTGAGCACGCTGGGGCTGAGGCCCTCGGCCACCGACTGCGACATCGTGCGCCGCGCCT
GCGAGAGCGTGTCCACGCGCGCCGCGCACATGTGCGCCGCGGGGCTGGCAGGCGTCATCA
ACCGCATGCGCGGTTCCCCTTTGCAGGACGTGATGCGCATCACCGTGGGCGTGGACGGCT
CCGTGTACAAGCTGCACCCCAGCTTCAAGGAGCGGTTCCACGCCAGCGTGCGCAGGCTGA
CGCCCAGCTGCGAAATCACCTTCATCGAGTCGGAGGAGGGCAGCGGCCGGGGCGCGGCCT
TGATCTCCGCGGTGGCGTCTAAGAAGGCCTGCATGCTGGGCCAGTGAAAATAGAGGCTGC
AAGGCAACGAGGAGGCTGTGGCCAGCCGCTGGACCTGGGCTTCAGGGGACACGCTCCTGA
CAGGTCCTCCCAACTGGGCTCAGTCAAGAGGTTTCTCCTTGTAAGGACCCTGGACGCTTC
CTATCCCCACTGTCACCCCAGAAGATGGGGAAGACCTCTTCCAGGAATGCGGAGAGCCCC
CGGCTGGCCTCTTCTCTCAGAGTCAGTTGGCAGGACAGCCCTAGGGCCCTGACTGGGTTG
GGGGCTGAGATGAGCAGGTACGGAGCCCCCAGAGTACCTCGCCTTTCTTGCTGGAATCAA
GGACCCAGAAGGAAGTTAACTCAGGATTTTGTTGCATGTCTGCACTGCTTGCCTCTTGGA
GCTTTCAGCCTAGCTCAGCCACCCTTAGGCCCTGGCTCTGGAAAGGGGGTGCCCTCTAGA
CCCCGCTATGGCCTGGCTTCCCTGGGAACTCAGCCCACATGAGGAGGAAACCCTTGTGAG
GAAGCCCTGGGTTCCACAGGGGGCCTGGGGAAGCTGCTGATCACCTAGGCCTGGGAAGTG
GGAGGACAGAGCCGCGACCTTGCTGAAGCTGCAGCGACACTGGGCCATGGGAGGATGGAG
CAGGTACCGTAGGGCCTGGAGATGGCAGCCTTTTCCCTCCCACACTGCTATTCCTGAGTG
GTTCGTGGTTCTGGAATGGACCCTCCCAGGAAGTATAAGAGACAGAGCCCCCAGAGTCCC
TGCCCAGAGGGTCTCAGGAAGAGGAGTCATCCCTCCACCCACACACAGGCCTGGGAGCAC
CTCCAGAATGGAGTCCTCAGCTCCCATGGCGCTGGCTGGGAAGGAAACCCGGGCAGCATT
CAGCATACCCCCGCGGGACAACCCAGGCCTCTTTCTTCTCACCAGACCTCCATGGACCAC
ACCAACCTCTCCATGTCTGGGATCGGGTGGGGTTTTTTAATTAAAAGTTTTAAAAGCTTA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAAGGCCGCCGCTGTGGGGGGTCGAGCTGGCGGGGGACCGAGCGACCCTCCCTGCA
GCAGTGTCCTCCCGCCCCCGCCCCACAGCGACTCGGGCGACCGCAAGCAGATCTACAACA
TCCTGAGCACGCTGGGGCTGAGGCCCTCGGCCACCGACTGCGACATCGTGCGCCGCGCCT
GCGAGAGCGTGTCCACGCGCGCCGCGCACATGTGCGCCGCGGGGCTGGCAGGCGTCATCA
ACCGCATGCGCGGTTCCCCTTTGCAGGACGTGATGCGCATCACCGTGGGCGTGGACGGCT
CCGTGTACAAGCTGCACCCCAGCTTCAAGGAGCGGTTCCACGCCAGCGTGCGCAGGCTGA
CGCCCAGCTGCGAAATCACCTTCATCGAGTCGGAGGAGGGCAGCGGCCGGGGCGCGGCCT
TGATCTCCGCGGTGGCGTCTAAGAAGGCCTGCATGCTGGGCCAGTGAAAATAGAGGCTGC
AAGGCAACGAGGAGGCTGTGGCCAGCCGCTGGACCTGGGCTTCAGGGGACACGCTCCTGA
CAGGTCCTCCCAACTGGGCTCAGTCAAGAGGTTTCTCCTTGTAAGGACCCTGGACGCTTC
CTATCCCCACTGTCACCCCAGAAGATGGGGAAGACCTCTTCCAGGAATGCGGAGAGCCCC
CGGCTGGCCTCTTCTCTCAGAGTCAGTTGGCAGGACAGCCCTAGGGCCCTGACTGGGTTG
GGGGCTGAGATGAGCAGGTACGGAGCCCCCAGAGTACCTCGCCTTTCTTGCTGGAATCAA
GGACCCAGAAGGAAGTTAACTCAGGATTTTGTTGCATGTCTGCACTGCTTGCCTCTTGGA
GCTTTCAGCCTAGCTCAGCCACCCTTAGGCCCTGGCTCTGGAAAGGGGGTGCCCTCTAGA
CCCCGCTATGGCCTGGCTTCCCTGGGAACTCAGCCCACATGAGGAGGAAACCCTTGTGAG
GAAGCCCTGGGTTCCACAGGGGGCCTGGGGAAGCTGCTGATCACCTAGGCCTGGGAAGTG
GGAGGACAGAGCCGCGACCTTGCTGAAGCTGCAGCGACACTGGGCCATGGGAGGATGGAG
CAGGTACCGTAGGGCCTGGAGATGGCAGCCTTTTCCCTCCCACACTGCTATTCCTGAGTG
GTTCGTGGTTCTGGAATGGACCCTCCCAGGAAGTATAAGAGACAGAGCCCCCAGAGTCCC
TGCCCAGAGGGTCTCAGGAAGAGGAGTCATCCCTCCACCCACACACAGGCCTGGGAGCAC
CTCCAGAATGGAGTCCTCAGCTCCCATGGCGCTGGCTGGGAAGGAAACCCGGGCAGCATT
CAGCATACCCCCGCGGGACAACCCAGGCCTCTTTCTTCTCACCAGACCTCCATGGACCAC
ACCAACCTCTCCATGTCTGGGATCGGGTGGGGTTTTTTAATTAAAAGTTTTAAAAGCTTA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-322, gnl|bosTau2|chr4 (39094931-39094615)
               

               
               1-322, gnl|Hg17|chr7 (43958697-43958336)
               

               
               1-322, gnl|Mm7|chr11 (5854408-5854088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr4 (39094931-39094615)
               

               
               1-322, gnl|Hg17|chr7 (43958697-43958336)
               

               
               1-322, gnl|Mm7|chr11 (5854408-5854088)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

	1-322, gnl\|bosTau2\|chr4 (39094931-39094615)
	1-322, gnl\|Hg17\|chr7 (43958697-43958336)
	1-322, gnl\|Mm7\|chr11 (5854408-5854088)