Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O05.5

Sequence:


               
               TTTTTACATTGTAGTACTTGTTTTGCTTGTTGGTGGTGTTTGCTTATTTAATACATTCCG
TCAGGGACAGAAATTACATGCTTTTTTTTTCCTAGGAAGTGTGACTTGGGTTTTTCCCTC
TTTCTTTTTTTTTTTCCTGGTGGTGGTAGTGGTTATGTTTAAATGAAGTTGCTTTTACAG
CACCAAAGACTTAATCATCCATTTCCTATATAAAAGGTAGCTACTTTTTGCATAGACCTC
AAGTATATTGTAGTGTAGAGGTGGAATTTAAAGGAAGGTATTAAACAGGCTGTGTTTTAG
CTTATGGGCAAGTAATAAATTGTATCATTTATCTTGAATGTATCATAGATAAGCTGCTAT
ATAACGATTGCCACTTCAGATAGCTGTGAATTAGGTGATTAACTAGTTGTTATTTAGCCT
TCTAATTTCTGTATAAGTCTAATTACATGAAATAGAAGTTGGGGTTTTGATTTTTTACTT
TGCTTTTCTGTTTGGAGTGTCATTGTAACTACTGTATTGTAAATGATGGAAAATAATTGC
ATATGTTATTTTGGGGTGTGTTATTTGCATCAGTATTTTATCTCTTAATGTTCGTGCTCA
TCACTGCATATAAAAAAACTTGGATGTATCAATGTAACTTAATTTTTTATTTTCATACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTACATTGTAGTACTTGTTTTGCTTGTTGGTGGTGTTTGCTTATTTAATACATTCCG
TCAGGGACAGAAATTACATGCTTTTTTTTTCCTAGGAAGTGTGACTTGGGTTTTTCCCTC
TTTCTTTTTTTTTTTCCTGGTGGTGGTAGTGGTTATGTTTAAATGAAGTTGCTTTTACAG
CACCAAAGACTTAATCATCCATTTCCTATATAAAAGGTAGCTACTTTTTGCATAGACCTC
AAGTATATTGTAGTGTAGAGGTGGAATTTAAAGGAAGGTATTAAACAGGCTGTGTTTTAG
CTTATGGGCAAGTAATAAATTGTATCATTTATCTTGAATGTATCATAGATAAGCTGCTAT
ATAACGATTGCCACTTCAGATAGCTGTGAATTAGGTGATTAACTAGTTGTTATTTAGCCT
TCTAATTTCTGTATAAGTCTAATTACATGAAATAGAAGTTGGGGTTTTGATTTTTTACTT
TGCTTTTCTGTTTGGAGTGTCATTGTAACTACTGTATTGTAAATGATGGAAAATAATTGC
ATATGTTATTTTGGGGTGTGTTATTTGCATCAGTATTTTATCTCTTAATGTTCGTGCTCA
TCACTGCATATAAAAAAACTTGGATGTATCAATGTAACTTAATTTTTTATTTTCATACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-418, - strand, RNAz p=0.700368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-418, - strand, RNAz p=0.700368

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr15 (38274838-38274175)
               

               
               1-660, gnl|Hg17|chr11 (33332842-33333520)
               

               
               1-660, gnl|Mm7|chr2 (104279462-104278804)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr15 (38274838-38274175)
               

               
               1-660, gnl|Hg17|chr11 (33332842-33333520)
               

               
               1-660, gnl|Mm7|chr2 (104279462-104278804)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-660, gnl\|bosTau2\|chr15 (38274838-38274175)
	1-660, gnl\|Hg17\|chr11 (33332842-33333520)
	1-660, gnl\|Mm7\|chr2 (104279462-104278804)