Ss1.1-Pig4-TMW8060O09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTGTGACTCCGCGGCCTCGCAACCCTACGTCCCTGCAGCATGTCTGTCAAGAAGATT GCGATCTTCGGCGCCACTGGCAGAACCGGGCTCACCACCCTGGCGCAGGCGGTGCAAGCA GGTTATGAGGTGACGGTGCTGGTGCGGGACGTCTCTAGGCTGCCTGCAGAGGGGCCCCAG CCGGCCCACGTGGTCGTGGGCGACGTTCGGCAGGCGGCCGATGTGGACAAGACCGTGGCC GGGCAGGACGCCATCATCGTGCTCTTGGGCACCCGCAATGACCTCAGTCCTACCACAGTG ATGTCCGAGGGTGCCCGGAACATTGTGGCGGCCATGAAGGCCCATGGCGTGGACAAGGTC GTAGCCTGCACCTCGGCCTTCCTACTGTGGGACCCGTCCAAGGTGCCCCCCAGACTGCAG GACGTAACGGATGACCACATCCGGATGCACAAGATACTGCAGGAGTCGGGCCTGAAGTAT GTGGCAGTGATGCCACCACACATAGGAGATCAGCCGCTGACCGGGGCCTACACGGTGACC CTGGATGGACGAGGGCCCTCTAGGGTCATCTCCAAACATGACCTGGGCCACTTCATGCTG CACTGCCTCACCACTGATGAGTACAACGGCCACAACACCTACCCCTCCCACGAGTACGAA TAGGGCTCTGACCCCGTCCAGGAAGACAGCATCCTGTGGCTACAGCAAAGGATGGGAACA ATAAATCTCAAGCTAAGAGCTTCAGTTTATTCAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTGTGACTCCGCGGCCTCGCAACCCTACGTCCCTGCAGCATGTCTGTCAAGAAGATT GCGATCTTCGGCGCCACTGGCAGAACCGGGCTCACCACCCTGGCGCAGGCGGTGCAAGCA GGTTATGAGGTGACGGTGCTGGTGCGGGACGTCTCTAGGCTGCCTGCAGAGGGGCCCCAG CCGGCCCACGTGGTCGTGGGCGACGTTCGGCAGGCGGCCGATGTGGACAAGACCGTGGCC GGGCAGGACGCCATCATCGTGCTCTTGGGCACCCGCAATGACCTCAGTCCTACCACAGTG ATGTCCGAGGGTGCCCGGAACATTGTGGCGGCCATGAAGGCCCATGGCGTGGACAAGGTC GTAGCCTGCACCTCGGCCTTCCTACTGTGGGACCCGTCCAAGGTGCCCCCCAGACTGCAG GACGTAACGGATGACCACATCCGGATGCACAAGATACTGCAGGAGTCGGGCCTGAAGTAT GTGGCAGTGATGCCACCACACATAGGAGATCAGCCGCTGACCGGGGCCTACACGGTGACC CTGGATGGACGAGGGCCCTCTAGGGTCATCTCCAAACATGACCTGGGCCACTTCATGCTG CACTGCCTCACCACTGATGAGTACAACGGCCACAACACCTACCCCTCCCACGAGTACGAA TAGGGCTCTGACCCCGTCCAGGAAGACAGCATCCTGTGGCTACAGCAAAGGATGGGAACA ATAAATCTCAAGCTAAGAGCTTCAGTTTATTCAGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 118-288, gnl|bosTau2|chr18 (41493960-41493790) | |
| 118-288, gnl|Hg17|chr19 (45656300-45656126) | |
| 118-288, gnl|Mm7|chr7 (24379024-24379198) | |
| 501-752, gnl|bosTau2|chr18 (41487995-41487742) | |
| 501-752, gnl|canFam2|chr1 (116166798-116166559) | |
| 501-752, gnl|canFam2|chr1 (116166791-116166559) | |
| 501-752, gnl|dasNov1|scaffold_140732 (401-652) | |
| 501-752, gnl|dasNov1|scaffold_140732 (404-652) | |
| 501-752, gnl|echTel1|scaffold_169139 (8768-8522) | |
| 501-752, gnl|echTel1|scaffold_169139 (8776-8522) | |
| 501-752, gnl|Hg17|chr19 (45645798-45645544) | |
| 501-752, gnl|hg17|chr2 (52064375-52064623) | |
| 501-752, gnl|hg17|chr3 (46935195-46935447) | |
| 501-752, gnl|loxAfr1|scaffold_31894 (5307-5058) | |
| 501-752, gnl|loxAfr1|scaffold_31894 (5304-5058) | |
| 501-752, gnl|mm7|chr7 (24386132-24385899) | |
| 501-752, gnl|mm7|chr7 (24386138-24385900) | |
| 501-752, gnl|Mm7|chr7 (24385877-24386131) | |
| 501-752, gnl|oryCun1|scaffold_98266 (706-925) | |
| 501-752, gnl|oryCun1|scaffold_98266 (700-925) | |
| 501-752, gnl|panTro1|chr12 (54164779-54165027) | |
| 501-752, gnl|panTro1|chr2_random (37740999-37740747) | |
| 501-752, gnl|rheMac2|chr13 (52121804-52122052) | |
| 501-752, gnl|rheMac2|chr2 (89621771-89621519) | |
| 501-752, gnl|rn3|chr1 (82624694-82624459) | |
| 501-752, gnl|rn3|chr1 (82624695-82624458) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 118-288, gnl|bosTau2|chr18 (41493960-41493790) | |
| 118-288, gnl|Hg17|chr19 (45656300-45656126) | |
| 118-288, gnl|Mm7|chr7 (24379024-24379198) | |
| 501-752, gnl|bosTau2|chr18 (41487995-41487742) | |
| 501-752, gnl|canFam2|chr1 (116166798-116166559) | |
| 501-752, gnl|canFam2|chr1 (116166791-116166559) | |
| 501-752, gnl|dasNov1|scaffold_140732 (401-652) | |
| 501-752, gnl|dasNov1|scaffold_140732 (404-652) | |
| 501-752, gnl|echTel1|scaffold_169139 (8768-8522) | |
| 501-752, gnl|echTel1|scaffold_169139 (8776-8522) | |
| 501-752, gnl|Hg17|chr19 (45645798-45645544) | |
| 501-752, gnl|hg17|chr2 (52064375-52064623) | |
| 501-752, gnl|hg17|chr3 (46935195-46935447) | |
| 501-752, gnl|loxAfr1|scaffold_31894 (5307-5058) | |
| 501-752, gnl|loxAfr1|scaffold_31894 (5304-5058) | |
| 501-752, gnl|mm7|chr7 (24386132-24385899) | |
| 501-752, gnl|mm7|chr7 (24386138-24385900) | |
| 501-752, gnl|Mm7|chr7 (24385877-24386131) | |
| 501-752, gnl|oryCun1|scaffold_98266 (706-925) | |
| 501-752, gnl|oryCun1|scaffold_98266 (700-925) | |
| 501-752, gnl|panTro1|chr12 (54164779-54165027) | |
| 501-752, gnl|panTro1|chr2_random (37740999-37740747) | |
| 501-752, gnl|rheMac2|chr13 (52121804-52122052) | |
| 501-752, gnl|rheMac2|chr2 (89621771-89621519) | |
| 501-752, gnl|rn3|chr1 (82624694-82624459) | |
| 501-752, gnl|rn3|chr1 (82624695-82624458) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nbm (0.993246) | |
| eli (0.455443) | |
| fli (0.405762) | |
| csp (0.322373) | |
| cli (0.305623) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.993246) | |
| eli (0.455443) | |
| fli (0.405762) | |
| csp (0.322373) | |
| cli (0.305623) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) |