Ss1.1-Pig4-TMW8060O15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCATTTCTGGTTAACCAAGCTGTTAAGTGCACCAGAAGGATAAATTTGGAACAGTGTG AAGAAATAGAAACCCTGAGCATGGCTTATTACAGCAGCCCTAAAATTTTGAAGGTGCCTG GTTCAGGAACAAAGGTCCCTATCACTGTTCAGTCCATTGTCATTCAGTCTCTAAATAAAA CACTAACCCGGCTGGAAGGCATTGACTTATTGAAGCCAAGACATGTGGAAGCTGGACACA ATAAAATCTGCATTAACATTGTTCTCAAGGTAAAGTACAGCCTCACATATACAGATGCAG GTGAAATAATAAAAGCTGATCTCTCTCTCCTTCTGGGAGCAGTTAGCAGTGCAATGGTTC CACTCCAGCAAAAGTTTGACATTTATTTTATTCAGCAAAATACAAAGCCAGTTCCTCTCA GTGGAAACCCCGGTTATGGTTTGGGGCTCCCGCTAGCTGCTGGATTTCAGCCTCGGAAGG GGTCTGGGATTATTCAGACCACAAATAGATACGGACAATTTACTATCCTTCGTAGCACAA CTGAGCAAGACTGCTTAGCAATAGAGGGAATCCGGACCCCAGTATTATTTGGTTACAACA TGCAATCTGGCTGTAAACTCAGGCTGACCAAAACTATCACATGTCGGCTGGCAGCCCAGA AGGTGAAGAGCCTGCTGAAGGGTCAGGGCTTCCCAGATTACGTGGCCCCATTTGGAAATT CCCAGGCCCAGGATGTGCTGGACTGGGTGCCCATCCACTTCATCACCCAGACATCCCATG TGAAGGATTCTTGCCAGCTCCCAGTGGCTTTGGCTATAGAAGTGAAGTGGACTAAATATG GATCCTTATTGAACCCACAGGCTAAAATAGTCAATGTAACTGCAAATCTAATTTCATCTT CTTTTTCTGAGACCCACTTAGGAAATGAAAGGACAATTCTTATTTCTACTGCGGTTACTT TTGTGGATGTATCTGCACCTGCAGAGGCAGGCTTCAGAGCTCGGCCAACCATCAACGCCA GGCTGCCCTTTAATTTCTTCTTCCCGTTTGTTTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCATTTCTGGTTAACCAAGCTGTTAAGTGCACCAGAAGGATAAATTTGGAACAGTGTG AAGAAATAGAAACCCTGAGCATGGCTTATTACAGCAGCCCTAAAATTTTGAAGGTGCCTG GTTCAGGAACAAAGGTCCCTATCACTGTTCAGTCCATTGTCATTCAGTCTCTAAATAAAA CACTAACCCGGCTGGAAGGCATTGACTTATTGAAGCCAAGACATGTGGAAGCTGGACACA ATAAAATCTGCATTAACATTGTTCTCAAGGTAAAGTACAGCCTCACATATACAGATGCAG GTGAAATAATAAAAGCTGATCTCTCTCTCCTTCTGGGAGCAGTTAGCAGTGCAATGGTTC CACTCCAGCAAAAGTTTGACATTTATTTTATTCAGCAAAATACAAAGCCAGTTCCTCTCA GTGGAAACCCCGGTTATGGTTTGGGGCTCCCGCTAGCTGCTGGATTTCAGCCTCGGAAGG GGTCTGGGATTATTCAGACCACAAATAGATACGGACAATTTACTATCCTTCGTAGCACAA CTGAGCAAGACTGCTTAGCAATAGAGGGAATCCGGACCCCAGTATTATTTGGTTACAACA TGCAATCTGGCTGTAAACTCAGGCTGACCAAAACTATCACATGTCGGCTGGCAGCCCAGA AGGTGAAGAGCCTGCTGAAGGGTCAGGGCTTCCCAGATTACGTGGCCCCATTTGGAAATT CCCAGGCCCAGGATGTGCTGGACTGGGTGCCCATCCACTTCATCACCCAGACATCCCATG TGAAGGATTCTTGCCAGCTCCCAGTGGCTTTGGCTATAGAAGTGAAGTGGACTAAATATG GATCCTTATTGAACCCACAGGCTAAAATAGTCAATGTAACTGCAAATCTAATTTCATCTT CTTTTTCTGAGACCCACTTAGGAAATGAAAGGACAATTCTTATTTCTACTGCGGTTACTT TTGTGGATGTATCTGCACCTGCAGAGGCAGGCTTCAGAGCTCGGCCAACCATCAACGCCA GGCTGCCCTTTAATTTCTTCTTCCCGTTTGTTTGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr17 (30116495-30116381) | |
| 1-115, gnl|Hg17|chr12 (109535192-109535306) | |
| 1-115, gnl|Mm7|chr5 (121485986-121485872) | |
| 246-395, gnl|bosTau2|chr17 (30110099-30109949) | |
| 246-395, gnl|canFam2|chr26 (11448799-11449007) | |
| 246-395, gnl|dasNov1|scaffold_20508 (11296-11088) | |
| 246-395, gnl|echTel1|scaffold_164164 (28-236) | |
| 246-395, gnl|fr1|chrUn (188487158-188486922) | |
| 246-395, gnl|galGal2|chr15 (5938087-5938287) | |
| 246-395, gnl|hg17|chr12 (109541486-109541693) | |
| 246-395, gnl|Hg17|chr12 (109541524-109541674) | |
| 246-395, gnl|loxAfr1|scaffold_14502 (12290-12499) | |
| 246-395, gnl|mm7|chr5 (121482351-121482165) | |
| 246-395, gnl|Mm7|chr5 (121482321-121482182) | |
| 246-395, gnl|monDom2|scaffold_97 (716356-716141) | |
| 246-395, gnl|oryCun1|scaffold_203633 (48459-48643) | |
| 246-395, gnl|panTro1|chr10 (112123743-112123946) | |
| 246-395, gnl|rheMac2|chr11 (111580992-111581198) | |
| 246-395, gnl|rn3|chr12 (35394068-35394246) | |
| 246-395, gnl|xenTro1|scaffold_501 (279565-279356) | |
| 621-786, gnl|bosTau2|chr17 (30106872-30106707) | |
| 621-786, gnl|Hg17|chr12 (109545490-109545655) | |
| 621-786, gnl|Mm7|chr5 (121479927-121479762) | |
| 910-1055, gnl|bosTau2|chr17 (30104077-30103932) | |
| 910-1055, gnl|Hg17|chr12 (109548272-109548417) | |
| 910-1055, gnl|Mm7|chr5 (121476099-121475954) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr17 (30116495-30116381) | |
| 1-115, gnl|Hg17|chr12 (109535192-109535306) | |
| 1-115, gnl|Mm7|chr5 (121485986-121485872) | |
| 246-395, gnl|bosTau2|chr17 (30110099-30109949) | |
| 246-395, gnl|canFam2|chr26 (11448799-11449007) | |
| 246-395, gnl|dasNov1|scaffold_20508 (11296-11088) | |
| 246-395, gnl|echTel1|scaffold_164164 (28-236) | |
| 246-395, gnl|fr1|chrUn (188487158-188486922) | |
| 246-395, gnl|galGal2|chr15 (5938087-5938287) | |
| 246-395, gnl|hg17|chr12 (109541486-109541693) | |
| 246-395, gnl|Hg17|chr12 (109541524-109541674) | |
| 246-395, gnl|loxAfr1|scaffold_14502 (12290-12499) | |
| 246-395, gnl|mm7|chr5 (121482351-121482165) | |
| 246-395, gnl|Mm7|chr5 (121482321-121482182) | |
| 246-395, gnl|monDom2|scaffold_97 (716356-716141) | |
| 246-395, gnl|oryCun1|scaffold_203633 (48459-48643) | |
| 246-395, gnl|panTro1|chr10 (112123743-112123946) | |
| 246-395, gnl|rheMac2|chr11 (111580992-111581198) | |
| 246-395, gnl|rn3|chr12 (35394068-35394246) | |
| 246-395, gnl|xenTro1|scaffold_501 (279565-279356) | |
| 621-786, gnl|bosTau2|chr17 (30106872-30106707) | |
| 621-786, gnl|Hg17|chr12 (109545490-109545655) | |
| 621-786, gnl|Mm7|chr5 (121479927-121479762) | |
| 910-1055, gnl|bosTau2|chr17 (30104077-30103932) | |
| 910-1055, gnl|Hg17|chr12 (109548272-109548417) | |
| 910-1055, gnl|Mm7|chr5 (121476099-121475954) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| sug (0.127291) |