Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O17.5

Sequence:


               
               ACACGCTCTCCAACCAAGGAGGCCAGACAGAGGGACCTGATCACTCTCTGAAAGGTTCAA
CTCGAGACATACAAGATGCAGTGGGCCTCTCTCCTGCTGCTGGCAGGGCTCTGCTCCCTC
TCCTGGGCCCAGTATGAAGATGACTCCCACTGGTGGTTCCACTACCTCCGCAACCAGCAG
TCCACCTACTACGATCACTATGACCCTTACCCTTATGAGCCCTATGAGCCTTACCCCTAC
GGGGTTGAGGAAGGTCCAGCTTATGCCTACGGCTCTCCACCACCACCTGAACCCCGTGAT
TGCCCCCAGGAGTGCGACTGCCCCCCCAATTTCCCCACAGCCATGTACTGTGACAACCGC
AACCTCAAGTACCTGCCTTTTGTCCCCTCCCGCATGAAATATGTCTACTTCCAGAACAAC
CAGATCTCTTCCATCCAAGAGGGCGTCTTCGACAATGCCACTGGGCTGCTCTGGATTGCT
CTCCATGGCAACCAGATCACCAGTGATAAGGTGGGCAAGAAGGTCTTCTCCAAGCTGAGG
CACCTGGAGAGGCTGTACCTGGACCACAACAACCTGACCCGGATGCCTGGCCCACTGCCT
CGATCCCTGAGAGAGCTCCATCTTGACCACAACCAGATCTCAAGGGTCCCCAACAATGCG
CTGGAGGGGCTGGAGAACCTCACAGCCTTGTACCTCCAACACAACGAGATCCAGGAAGTA
GGCAGTTCAATGAGAGGCCTCCGGTCACTGATCTTGCTGGACCTGAGTTACAATCACCTT
CGGAAGGTGCCTGATGGACTGCCCTCGGCCCTTGAGCAGTTGTACCTAGAGCACAACAAC
GTCTACTCGGTCCCCGACAGCTACTTCCGGGGGTCGCCCAAGCTGCTATATGTGCGGCTG
TCCCACAACAGTCTCACCAACAATGGCCTGGCCTCCAACACTTTCAATTCCAGCAGCCTC
CTTGAGCTCGACCTCTCCTACAACCAGCTGCAGAAGATCCCCCCAGTCAACACCAACCTG
GAGAACCTCTACCTCCAAGGCAATAGGATCAATGAGTTCTCCATTAGCAGTTTCTGCACC
GTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTGCGCCTGGATGGGAACGAGATC
AAGCGCAGCGCCATGCCCGCCGATGCGCCCCTCTGCCTGCGCCTCGCCAGCCTCATCGAG
ATCTGAGCGGCCCACACACTGGGCGCAGGGTCGGAGCCCCGGGGCCCCTCTGCATTTGGC
TTGATGGTTTGGTTTGGCTTTTGCTGGAAGGTCTGGGACAGATCATGTGACAGAAGTCCA
TGGGCTCCCTCTATAGTCTTCTTCCCTGTAGGCAGGTTTAGGTGGAATCTGGGGACAGGC
AGCCTTCTTCTGCTGAGGGAAATGAAACTCTCTTTTCCAGGACAGAAATGGTGGCAGAGG
GAGTAATCTTTGAAGTCCCAAACCCAGAAATCTCATTACCCTCAAGTTCCTCACGATGAT
GTGGTGCCATGAACCTTAAAAGTTCATGGGCATAACCGTACTTTATAAACAATCACTGAC
TATGTGAGCAGCGCTTGACAGCTCTCCCACATGCAGGGCTAGTGGTGCAGTTACTCTTGG
CTCCCACTCACTGCTCCTCAGAATATACCTCTTGCCTAAATGCCTCCTCCTAAGTCCACT
TCATCCCCCCCAGTCTTGCTCTATAGACACCTTTTCTATGGCTTAGGCAGAGGCAGGAGA
CCCCAAGGCACATCTGCATCTGCCCAGCGCCTGTCCAGAGAAGTCATGCTTGTGTCTGAG
GTTGGAAGGACACCAAGAGTCACCTCTACCTTCCAAACCTCACTCTTCGAAAGCCACCGT
ATTAGAGATCACCAATATGATGACAACATTCCTGGCTTGTTGTGGAACCGATCTCAGGCT
TAGCTAAATGTGTGGGACTGTGTTTTAGCAGCTGGGCAGCTCTTTGAAGGTGAATCAGAC
TTCAAAAGAGGAAAGGCCAGACTCTGTTTATCATCAGCATCCGTAATGGGAATAAACACA
CCTGGAATTGGCTGAACTGAGAAGCAGCCCCAGTAGTTTCTTTGTTGTCCAGCACTCTCT
ACATTCCCAGCAGCTCCCTACCTGGGCCTTCATCCTCAAAGGCAGGAGGAAGGTCATTTG
TCCTCTCCTCTTATGCAAGCAGAAAGATCTATATCCTGATGGTAGAGGCAGACTCCAACC
AGCCCTGGACTTGCCTGCTAGCCCAAAGGAAGAGGCTGTGGTATTAATGGTTTTGCTATC
TGTATTAATTGTTTTGTTCTAAAACCACAGTTAATAGGACCAGCTCTGGCTGAAAATGCT
CACTGGGTCTGTGAAGCCCAGGCCAGGCAGCCAAATTTTGCCTGTGCTGAGCAGAAAACC
CTCTGCTTTCACACCTCTGAGCTATACCCTCATTACGGAAGATGGCTGTTGCTTTATAGC
TTGGCAGGAGAACAATGAATTCTTACCATTTCTGAAAGTAATGTTACCTAGGAAGCCCCT
ATCTTTGAGGTCCCATTGGGATGGAGCCATCTGGGCAGCCAGGAGCAGGGACTGCTGGAG
GGAGGCTAGCCCTGGTCTGGTCCCTGCCCAGATGCCACTGCATCCCTGATACAGTGTCTT
CTTTGAAGTGGTTTCCCTAAAGAGGGAAGGGGGGATCCTTGGACTGTGTTCCTAGCTCTG
GACCCTGAAATCCACAAAAGCCAAACCAGCTCATTTCAACAAAGGAGCTCTGCTGTGAGG
GGCAAGGCTGCCCCAGGGCTCTTCAGAAAGCATCTGCATGTGAACACCATCATGCCTCTA
TAAAGGATCCTTACTACAGGAAAAGCATGAGTGGTGGCTAACCTGCCCAATAAAGTTATT
TTATGTTTGCATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGCTCTCCAACCAAGGAGGCCAGACAGAGGGACCTGATCACTCTCTGAAAGGTTCAA
CTCGAGACATACAAGATGCAGTGGGCCTCTCTCCTGCTGCTGGCAGGGCTCTGCTCCCTC
TCCTGGGCCCAGTATGAAGATGACTCCCACTGGTGGTTCCACTACCTCCGCAACCAGCAG
TCCACCTACTACGATCACTATGACCCTTACCCTTATGAGCCCTATGAGCCTTACCCCTAC
GGGGTTGAGGAAGGTCCAGCTTATGCCTACGGCTCTCCACCACCACCTGAACCCCGTGAT
TGCCCCCAGGAGTGCGACTGCCCCCCCAATTTCCCCACAGCCATGTACTGTGACAACCGC
AACCTCAAGTACCTGCCTTTTGTCCCCTCCCGCATGAAATATGTCTACTTCCAGAACAAC
CAGATCTCTTCCATCCAAGAGGGCGTCTTCGACAATGCCACTGGGCTGCTCTGGATTGCT
CTCCATGGCAACCAGATCACCAGTGATAAGGTGGGCAAGAAGGTCTTCTCCAAGCTGAGG
CACCTGGAGAGGCTGTACCTGGACCACAACAACCTGACCCGGATGCCTGGCCCACTGCCT
CGATCCCTGAGAGAGCTCCATCTTGACCACAACCAGATCTCAAGGGTCCCCAACAATGCG
CTGGAGGGGCTGGAGAACCTCACAGCCTTGTACCTCCAACACAACGAGATCCAGGAAGTA
GGCAGTTCAATGAGAGGCCTCCGGTCACTGATCTTGCTGGACCTGAGTTACAATCACCTT
CGGAAGGTGCCTGATGGACTGCCCTCGGCCCTTGAGCAGTTGTACCTAGAGCACAACAAC
GTCTACTCGGTCCCCGACAGCTACTTCCGGGGGTCGCCCAAGCTGCTATATGTGCGGCTG
TCCCACAACAGTCTCACCAACAATGGCCTGGCCTCCAACACTTTCAATTCCAGCAGCCTC
CTTGAGCTCGACCTCTCCTACAACCAGCTGCAGAAGATCCCCCCAGTCAACACCAACCTG
GAGAACCTCTACCTCCAAGGCAATAGGATCAATGAGTTCTCCATTAGCAGTTTCTGCACC
GTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTGCGCCTGGATGGGAACGAGATC
AAGCGCAGCGCCATGCCCGCCGATGCGCCCCTCTGCCTGCGCCTCGCCAGCCTCATCGAG
ATCTGAGCGGCCCACACACTGGGCGCAGGGTCGGAGCCCCGGGGCCCCTCTGCATTTGGC
TTGATGGTTTGGTTTGGCTTTTGCTGGAAGGTCTGGGACAGATCATGTGACAGAAGTCCA
TGGGCTCCCTCTATAGTCTTCTTCCCTGTAGGCAGGTTTAGGTGGAATCTGGGGACAGGC
AGCCTTCTTCTGCTGAGGGAAATGAAACTCTCTTTTCCAGGACAGAAATGGTGGCAGAGG
GAGTAATCTTTGAAGTCCCAAACCCAGAAATCTCATTACCCTCAAGTTCCTCACGATGAT
GTGGTGCCATGAACCTTAAAAGTTCATGGGCATAACCGTACTTTATAAACAATCACTGAC
TATGTGAGCAGCGCTTGACAGCTCTCCCACATGCAGGGCTAGTGGTGCAGTTACTCTTGG
CTCCCACTCACTGCTCCTCAGAATATACCTCTTGCCTAAATGCCTCCTCCTAAGTCCACT
TCATCCCCCCCAGTCTTGCTCTATAGACACCTTTTCTATGGCTTAGGCAGAGGCAGGAGA
CCCCAAGGCACATCTGCATCTGCCCAGCGCCTGTCCAGAGAAGTCATGCTTGTGTCTGAG
GTTGGAAGGACACCAAGAGTCACCTCTACCTTCCAAACCTCACTCTTCGAAAGCCACCGT
ATTAGAGATCACCAATATGATGACAACATTCCTGGCTTGTTGTGGAACCGATCTCAGGCT
TAGCTAAATGTGTGGGACTGTGTTTTAGCAGCTGGGCAGCTCTTTGAAGGTGAATCAGAC
TTCAAAAGAGGAAAGGCCAGACTCTGTTTATCATCAGCATCCGTAATGGGAATAAACACA
CCTGGAATTGGCTGAACTGAGAAGCAGCCCCAGTAGTTTCTTTGTTGTCCAGCACTCTCT
ACATTCCCAGCAGCTCCCTACCTGGGCCTTCATCCTCAAAGGCAGGAGGAAGGTCATTTG
TCCTCTCCTCTTATGCAAGCAGAAAGATCTATATCCTGATGGTAGAGGCAGACTCCAACC
AGCCCTGGACTTGCCTGCTAGCCCAAAGGAAGAGGCTGTGGTATTAATGGTTTTGCTATC
TGTATTAATTGTTTTGTTCTAAAACCACAGTTAATAGGACCAGCTCTGGCTGAAAATGCT
CACTGGGTCTGTGAAGCCCAGGCCAGGCAGCCAAATTTTGCCTGTGCTGAGCAGAAAACC
CTCTGCTTTCACACCTCTGAGCTATACCCTCATTACGGAAGATGGCTGTTGCTTTATAGC
TTGGCAGGAGAACAATGAATTCTTACCATTTCTGAAAGTAATGTTACCTAGGAAGCCCCT
ATCTTTGAGGTCCCATTGGGATGGAGCCATCTGGGCAGCCAGGAGCAGGGACTGCTGGAG
GGAGGCTAGCCCTGGTCTGGTCCCTGCCCAGATGCCACTGCATCCCTGATACAGTGTCTT
CTTTGAAGTGGTTTCCCTAAAGAGGGAAGGGGGGATCCTTGGACTGTGTTCCTAGCTCTG
GACCCTGAAATCCACAAAAGCCAAACCAGCTCATTTCAACAAAGGAGCTCTGCTGTGAGG
GGCAAGGCTGCCCCAGGGCTCTTCAGAAAGCATCTGCATGTGAACACCATCATGCCTCTA
TAAAGGATCCTTACTACAGGAAAAGCATGAGTGGTGGCTAACCTGCCCAATAAAGTTATT
TTATGTTTGCATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6606280|gb|AAF19154.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6606280|gb|AAF19154.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               384-2560, - strand, RNAz p=0.973308
               

               
               624-743, - strand, RNAz p=0.811123
               

               
               864-1054, + strand, RNAz p=0.912353

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-2560, - strand, RNAz p=0.973308
               

               
               624-743, - strand, RNAz p=0.811123
               

               
               864-1054, + strand, RNAz p=0.912353

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002023, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002023, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               65-1054, gnl|bosTau2|chr16 (2504008-2503019)
               

               
               65-1054, gnl|Hg17|chr1 (200049064-200048077)
               

               
               65-1054, gnl|Mm7|chr1 (133929999-133930987)
               


               
               1866-2145, gnl|bosTau2|chr16 (2497573-2497284)
               

               
               1866-2145, gnl|Hg17|chr1 (200042453-200042166)
               

               
               1866-2145, gnl|Mm7|chr1 (133936962-133937208)
               


               
               2426-2560, gnl|bosTau2|chr16 (2497175-2497036)
               

               
               2426-2560, gnl|Hg17|chr1 (200041889-200041750)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1054, gnl|bosTau2|chr16 (2504008-2503019)
               

               
               65-1054, gnl|Hg17|chr1 (200049064-200048077)
               

               
               65-1054, gnl|Mm7|chr1 (133929999-133930987)
               


               
               1866-2145, gnl|bosTau2|chr16 (2497573-2497284)
               

               
               1866-2145, gnl|Hg17|chr1 (200042453-200042166)
               

               
               1866-2145, gnl|Mm7|chr1 (133936962-133937208)
               


               
               2426-2560, gnl|bosTau2|chr16 (2497175-2497036)
               

               
               2426-2560, gnl|Hg17|chr1 (200041889-200041750)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               nca (2.73748)
               

               
               amn (1.67084)
               

               
               jca (1.1396)
               

               
               eru (1.08043)
               

               
               elu (0.770713)
               

               
               med (0.58126)
               

               
               ese (0.506009)
               

               
               eep (0.490256)
               

               
               mas (0.42061)
               

               
               aor (0.390549)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               clu (0.358938)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (2.73748)
               

               
               amn (1.67084)
               

               
               jca (1.1396)
               

               
               eru (1.08043)
               

               
               elu (0.770713)
               

               
               med (0.58126)
               

               
               ese (0.506009)
               

               
               eep (0.490256)
               

               
               mas (0.42061)
               

               
               aor (0.390549)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               clu (0.358938)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	384-2560, - strand, RNAz p=0.973308
	624-743, - strand, RNAz p=0.811123
	864-1054, + strand, RNAz p=0.912353

	65-1054, gnl\|bosTau2\|chr16 (2504008-2503019)
	65-1054, gnl\|Hg17\|chr1 (200049064-200048077)
	65-1054, gnl\|Mm7\|chr1 (133929999-133930987)

	1866-2145, gnl\|bosTau2\|chr16 (2497573-2497284)
	1866-2145, gnl\|Hg17\|chr1 (200042453-200042166)
	1866-2145, gnl\|Mm7\|chr1 (133936962-133937208)

	2426-2560, gnl\|bosTau2\|chr16 (2497175-2497036)
	2426-2560, gnl\|Hg17\|chr1 (200041889-200041750)

	nca (2.73748)
	amn (1.67084)
	jca (1.1396)
	eru (1.08043)
	elu (0.770713)
	med (0.58126)
	ese (0.506009)
	eep (0.490256)
	mas (0.42061)
	aor (0.390549)
	nlu (0.383362)
	nep (0.36785)
	clu (0.358938)
	cty (0.31224)
	fce (0.271592)
	cly (0.241284)
	cmu (0.186393)
	ton (0.1755)
	mcp (0.170648)
	eye (0.170503)
	nco (0.161734)
	cag (0.151194)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)