Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O18.3

Sequence:


               
               TTTGGAGAGTAAACACAGAGTGGGAGAATGGATTAACTAGATAGGAGGTCCCTTGCCACC
CCGGGAGTCTGTGAATTACATTGTAATTCCCACTGAGGCAGCTTTACATATTAATGTCAC
TCCATACTGACATTCTCCACAAAGATACAAAATGAAAATATATTTAAAAGATCTTTAATG
CATCATAATCACAACCTTTTAAAGCAGGAAAATGTACAAATAAGTCTTAGATTAGAATCT
GTATTAAAGTGTTTGTAAACAGGAACACTAACATCCAAGTAACCAGATAATCTGGGTTTA
AAATAATTTTCCCATGGTACTGGTTAAAACTTTGAAACTATTTTAATTCACTTAGTTTTT
CAGATATTTTATGCTGTAAAAATATTACATACTTTTTATATGTGTATTCTTAAATTTTAA
AAAATCACTGGGAATGGGCAAAGATGGTATAATTTTGGACGTCTAATTTCCAAGACATTT
AACTAGATTCCTAATTGCCTCATTCAAAAGCTTGGATTTTTGTTTTCCCCATAGGAAAGG
CCAAATTAAGCTCCAGAGACTATCCTTGAAGTAAGGGGTGATCTTGTGGTAAAGGTTTGG
AGTTTTAGGCAGCAGTGTGCAGGCATTTCAGGCCTCTTTGTTGAATTAGTGCTTTTTGTG
TTCTTGCTTGTCAGAAACATTCTCTGTTGTTGATTTAACAAAAGCAAATTGTGATAAACT
GTTAAAAATTTTTTTGATGCTTCAAGCACATGGTTAACTGATTTTTTAAAAATTCCTCCG
TTTGGTTCCTCCCACTATCCTAAATAGGACTTTCATATTATTAAAACCTCAAACACTGAT
CCACCCAGGATGAACTAAGCATCACCAAGGGGAAAGAAAACATTTTTTATCTTTACAAAA
AACAAATATTAAGATTATATATATAGGTGTATTCTTTATGTTGGATATTGTACTAGAGTC
CTCCTTACAGGCAATGGAATAGTTTAGCACCCTTAGCATTAGCATTCCTAGATTGGTGTC
TGTAGCTACAGTTTTAAAATGTATAACCTGAAAATGAAGTTAATTTTGCATTTTAAGAGC
ACACCATGATCTATGTAAAAAGATTGTCCATTTGGTGTATTTTTTTAAAAAAGAGAAAGC
ACTTTCATATTAACAAGTAGCATGTGTATGAATTTTAAATTTTCATATTTGTTGTGTCTG
TATTCAGTGAAGTAAAATTGAACATTCAAATGTTTGTTGATGGCAACATTAACTGTTAAA
TTAAAGCACCTTATACTCTGCTGCTTAAACTTGCTTGTAATTGCACCTTTGTTACCTGCA
CATTTTCACACAGAATATTGTTGTAACATTGCTTCATGTGGGTCTGGATGGAAGGTTAGT
GGGCCTACAGGATCATTTATTTATATTGTTTATATTACAATAATATATTGTAGACCAGTT
GTAAGTTCATTTCTTTAAAAAATAAAAGCCTCTTCCATTTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGAGAGTAAACACAGAGTGGGAGAATGGATTAACTAGATAGGAGGTCCCTTGCCACC
CCGGGAGTCTGTGAATTACATTGTAATTCCCACTGAGGCAGCTTTACATATTAATGTCAC
TCCATACTGACATTCTCCACAAAGATACAAAATGAAAATATATTTAAAAGATCTTTAATG
CATCATAATCACAACCTTTTAAAGCAGGAAAATGTACAAATAAGTCTTAGATTAGAATCT
GTATTAAAGTGTTTGTAAACAGGAACACTAACATCCAAGTAACCAGATAATCTGGGTTTA
AAATAATTTTCCCATGGTACTGGTTAAAACTTTGAAACTATTTTAATTCACTTAGTTTTT
CAGATATTTTATGCTGTAAAAATATTACATACTTTTTATATGTGTATTCTTAAATTTTAA
AAAATCACTGGGAATGGGCAAAGATGGTATAATTTTGGACGTCTAATTTCCAAGACATTT
AACTAGATTCCTAATTGCCTCATTCAAAAGCTTGGATTTTTGTTTTCCCCATAGGAAAGG
CCAAATTAAGCTCCAGAGACTATCCTTGAAGTAAGGGGTGATCTTGTGGTAAAGGTTTGG
AGTTTTAGGCAGCAGTGTGCAGGCATTTCAGGCCTCTTTGTTGAATTAGTGCTTTTTGTG
TTCTTGCTTGTCAGAAACATTCTCTGTTGTTGATTTAACAAAAGCAAATTGTGATAAACT
GTTAAAAATTTTTTTGATGCTTCAAGCACATGGTTAACTGATTTTTTAAAAATTCCTCCG
TTTGGTTCCTCCCACTATCCTAAATAGGACTTTCATATTATTAAAACCTCAAACACTGAT
CCACCCAGGATGAACTAAGCATCACCAAGGGGAAAGAAAACATTTTTTATCTTTACAAAA
AACAAATATTAAGATTATATATATAGGTGTATTCTTTATGTTGGATATTGTACTAGAGTC
CTCCTTACAGGCAATGGAATAGTTTAGCACCCTTAGCATTAGCATTCCTAGATTGGTGTC
TGTAGCTACAGTTTTAAAATGTATAACCTGAAAATGAAGTTAATTTTGCATTTTAAGAGC
ACACCATGATCTATGTAAAAAGATTGTCCATTTGGTGTATTTTTTTAAAAAAGAGAAAGC
ACTTTCATATTAACAAGTAGCATGTGTATGAATTTTAAATTTTCATATTTGTTGTGTCTG
TATTCAGTGAAGTAAAATTGAACATTCAAATGTTTGTTGATGGCAACATTAACTGTTAAA
TTAAAGCACCTTATACTCTGCTGCTTAAACTTGCTTGTAATTGCACCTTTGTTACCTGCA
CATTTTCACACAGAATATTGTTGTAACATTGCTTCATGTGGGTCTGGATGGAAGGTTAGT
GGGCCTACAGGATCATTTATTTATATTGTTTATATTACAATAATATATTGTAGACCAGTT
GTAAGTTCATTTCTTTAAAAAATAAAAGCCTCTTCCATTTGAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               138-622, gnl|bosTau2|chr1 (62898480-62898955)
               

               
               138-622, gnl|Hg17|chr3 (171289728-171288930)
               

               
               138-622, gnl|Mm7|chr3 (30712717-30712209)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-622, gnl|bosTau2|chr1 (62898480-62898955)
               

               
               138-622, gnl|Hg17|chr3 (171289728-171288930)
               

               
               138-622, gnl|Mm7|chr3 (30712717-30712209)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	138-622, gnl\|bosTau2\|chr1 (62898480-62898955)
	138-622, gnl\|Hg17\|chr3 (171289728-171288930)
	138-622, gnl\|Mm7\|chr3 (30712717-30712209)

	spl (0.429553)
	tra (0.246184)
	cbe (0.239234)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	mga (0.160205)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	ssp (0.13552)
	ret (0.128733)
	thg (0.126791)